View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9935_low_15 (Length: 362)
Name: NF9935_low_15
Description: NF9935
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9935_low_15 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 16 - 362
Target Start/End: Original strand, 34216886 - 34217240
Alignment:
| Q |
16 |
atgaaaatcgtaatagcccctgccaagcggtaccattttccatttgttcaca--------tacttttccaagcttagtaaccaaatcatgctccatttat |
107 |
Q |
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| T |
34216886 |
atgaaaatcgtaatagcccatgccaagcggtaccattttccatttattcacagtcttccatacttttccaagcttagtaaccaaatcatgctccatttat |
34216985 |
T |
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| Q |
108 |
ggcttgtcgcccttattcaaggttagacgtccccagagagcattttgacattccgccaatcctttcgagtattctacctgaccaattctgatacaaagcg |
207 |
Q |
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| T |
34216986 |
ggcttgtcgcccttattcaaggtcagacgtccccagagagcattttgacattccgccaatcctttcgagtattctacctgaccaattctgatacaaagcg |
34217085 |
T |
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| Q |
208 |
cgtcacccttgaaacattatgattcatatatgttttagatctatttcatgtatcactgcgagtatgatggaaaaatattttttactcgccggttcctata |
307 |
Q |
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| T |
34217086 |
cgtcacccttgaaacattatgattcatatatgttttagatctatttcatgtatcactgcgagtatgatggaaaaatattttttactcgccggttcctata |
34217185 |
T |
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| Q |
308 |
gataaaattcaccattgatgagaggaacaaaacagatggggtctcaccttatctc |
362 |
Q |
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| T |
34217186 |
gataaaattcaccattgatgagaggaacaaaacagatggggtctcaccttatctc |
34217240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 218 - 293
Target Start/End: Complemental strand, 14621986 - 14621911
Alignment:
| Q |
218 |
gaaacattatgattcatatatgttttagatctatttcatgtatcactgcgagtatgatggaaaaatattttttact |
293 |
Q |
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| T |
14621986 |
gaaacattatgattcttatatgttttagatcaatttcatgtatcacaacgagtgggagggaaaaatattttttact |
14621911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 322 - 359
Target Start/End: Complemental strand, 9684748 - 9684711
Alignment:
| Q |
322 |
ttgatgagaggaacaaaacagatggggtctcaccttat |
359 |
Q |
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| T |
9684748 |
ttgatgagaggaacaaaatagatggggtctcaccttat |
9684711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 16 - 130
Target Start/End: Complemental strand, 11482848 - 11482726
Alignment:
| Q |
16 |
atgaaaatcgtaatagcccctgccaagcggtaccattttccatttgttca--------catacttttccaagcttagtaaccaaatcatgctccatttat |
107 |
Q |
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| T |
11482848 |
atgaaaatcgtaatagccccttcaaagtagtaccattttccatttattcatagtcttccatacttttccgagcttagtaaccgaattctgagctatgtat |
11482749 |
T |
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| Q |
108 |
ggcttgtcgcccttattcaaggt |
130 |
Q |
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| T |
11482748 |
ggcttgttgcccttatttaaggt |
11482726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 155 - 219
Target Start/End: Complemental strand, 11482709 - 11482645
Alignment:
| Q |
155 |
acattccgccaatcctttcgagtattctacctgaccaattctgatacaaagcgcgtcacccttga |
219 |
Q |
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| T |
11482709 |
acattctgccaatacttttgtgtattcttcctgaccaattctgatgcataacgcgtcaaccttga |
11482645 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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