View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9935_low_18 (Length: 331)
Name: NF9935_low_18
Description: NF9935
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9935_low_18 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 314
Target Start/End: Complemental strand, 48807274 - 48806959
Alignment:
| Q |
1 |
ttacaatcatatcatattacatgaaaagttgttggtttgtttggtaccgtgatnnnnnnnnnn--gtgaggcggacaggtttcatacacaggtcctgagt |
98 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| ||||| ||||||||| |
|
|
| T |
48807274 |
ttacaatcatatcatattacatgaaaagttgttggtttgtttggtactgtgataaaaaaaaaaaagtgaggcggacaggtttcacacacatgtcctgagt |
48807175 |
T |
|
| Q |
99 |
gcaatgcacctgtaatcaaacaatgttagtcaactaggttgtccccattctttttctggttttaaagctcaatgtctcccaccacatattagaaggaaat |
198 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48807174 |
gcaatgcacctgtaatcaaacaatgttagtcaactaggttgtcctcattctttttctggttttaaagctcaatgtctcccaccacatattagaaggaaat |
48807075 |
T |
|
| Q |
199 |
tttcttccttcttcaatttctacttgagatgtgttgtttagagtttagacccacaaaagtcgaataccaccgtgtagaaacaacattttggttctatttg |
298 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
48807074 |
tttcttccttcttcaatttctacttgagatgtgttgtttagagtttagacccacaaaagtcgaataccaccgtgtagaaaaaacattttggttctatttg |
48806975 |
T |
|
| Q |
299 |
caccagcatttgtcgc |
314 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
48806974 |
caccagcatttgtcgc |
48806959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University