View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9935_low_2 (Length: 597)
Name: NF9935_low_2
Description: NF9935
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9935_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 499; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 499; E-Value: 0
Query Start/End: Original strand, 19 - 585
Target Start/End: Complemental strand, 35757338 - 35756772
Alignment:
| Q |
19 |
aaccaaaatatagaaggaaactttaaagtttgactgctaaataatggttcttatctcaagaacaatactacccttctcatatgtggtgtgcagtataaga |
118 |
Q |
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| T |
35757338 |
aaccaaaatatagaaggaaactttaaagtttgactgctaaaaaatggttcttatctcaagaacaatactacccttctcatatgtggtgtgcagtataaga |
35757239 |
T |
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| Q |
119 |
aatattacatatagtatgaaaaatagtttatgtattaaagacaccataaattgtccaaaccttacatgtaatgccaagttctaaattttagaccatttcg |
218 |
Q |
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| T |
35757238 |
aatattacatatagtatgaaaaatagtttatgtattaaagacaccataaattgtccaaaccttacatgtaatgccaagttctaaattttagaccatttcg |
35757139 |
T |
|
| Q |
219 |
aattatatataatctgaattattgctaaatactggttcatattatataatttaaaatatgcatggacggtgttaaaagttatgatttgggggatatgaca |
318 |
Q |
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| T |
35757138 |
aattatatataatctgaattattgctaaatattggttcatattatataatttaaaatatgcatggacggtgttaaaagttatgatttggggg-tatgaca |
35757040 |
T |
|
| Q |
319 |
tgtttcagataatataatttgaatcatgtctagagcacatgaaatagnnnnnnngctgccattatatgaaacattacaatttcaaaaaagatgattcaac |
418 |
Q |
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| T |
35757039 |
tgtttcagataatataatttgaatcatgtctagagcacatgaaatagaaaaaaagctgccattatatgaaacataacaatttcaaaaaagatgattcaac |
35756940 |
T |
|
| Q |
419 |
aacaaaatacatcaacataaaacatcattattaaatataaacaatatcatgaatcaaccaaactaattttttcat-atggtctatacatgcaagccctga |
517 |
Q |
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| T |
35756939 |
aacaaaatacatcaacataaaacatcattattaaatataaacaatatcatgaatcaaccaaactaactttttcataatggtctatacatgcaagccctga |
35756840 |
T |
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| Q |
518 |
ttttttccgtagatccttagccgaatgaaactatcccgagtcttgtgaaaagatatgtctaaggaaac |
585 |
Q |
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||||||||||||||||||||||||||||||||||||||||| | | ||||||||||| |||||||||| |
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| T |
35756839 |
ttttttccgtagatccttagccgaatgaaactatcccgagtatcgcgaaaagatatgactaaggaaac |
35756772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 459 - 520
Target Start/End: Original strand, 6877565 - 6877626
Alignment:
| Q |
459 |
acaatatcatgaatcaaccaaactaattttttcatatggtctatacatgcaagccctgattt |
520 |
Q |
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| T |
6877565 |
acaagatcatggatcaaccaaaccaaattcttcgtatggtctatccatgcaagccttgattt |
6877626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 251 - 328
Target Start/End: Complemental strand, 1847642 - 1847565
Alignment:
| Q |
251 |
tggttcatattatataatttaaaatatgcatggacggtgttaaaagttatgatttgggggatatgacatgtttcagat |
328 |
Q |
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| T |
1847642 |
tggttcaaattatataatctgaaatatgcaaagaatgtgttaaaagttgtgatttgggggttttgactggtttcagat |
1847565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 432 - 484
Target Start/End: Complemental strand, 55399090 - 55399038
Alignment:
| Q |
432 |
aacataaaacatcattattaaatataaacaatatcatgaatcaaccaaactaa |
484 |
Q |
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||||||||||| ||| |||||||| |||||| |||||| |||| ||||||||| |
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| T |
55399090 |
aacataaaacaacataattaaatacaaacaaaatcatggatcagccaaactaa |
55399038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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