View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9935_low_20 (Length: 323)
Name: NF9935_low_20
Description: NF9935
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9935_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 100; Significance: 2e-49; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 7 - 190
Target Start/End: Original strand, 11805010 - 11805193
Alignment:
| Q |
7 |
ccaataagtggccatcccaaatgaccaggaggcagagggtgctgtttctttcttagtttcatattatagtaccactcattcaatctccacacaaaaatgt |
106 |
Q |
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| T |
11805010 |
ccaatgagaggccatcccaaatgaccaggaggtagagggtattgtttttttttgagtttcatattataataccactcattcaatctccacataaaattga |
11805109 |
T |
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| Q |
107 |
tcacacaaaaatagcttgcaaataaaatggcacacatccaaacccagtgttgtattttcatctttgaataattgaatctatcta |
190 |
Q |
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| T |
11805110 |
tcaaacaaaaatagcttgccaacaaaatggcacacatccaaacccaatattctatttccatctttgaataattggatatatcta |
11805193 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 106 - 211
Target Start/End: Original strand, 11819058 - 11819167
Alignment:
| Q |
106 |
ttcacacaaaaatagcttgcaaataaaatggcacacatccaaacccagtgttgtattttcatctttgaataattga----atctatctatctagttcatt |
201 |
Q |
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| T |
11819058 |
ttcacacaaaaatagcttgcaaataaaatggcacacatccaaacccagtattgtatttccatctttgaataattgaatatatctatctatctagttcatt |
11819157 |
T |
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| Q |
202 |
tgcttattat |
211 |
Q |
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| T |
11819158 |
tgcttattat |
11819167 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 1 - 176
Target Start/End: Original strand, 11820419 - 11820595
Alignment:
| Q |
1 |
atatttccaataagtggccatcccaaatgaccaggaggcagagggtgctgtttctttcttagtttcatattatagt-accactcattcaatctccacaca |
99 |
Q |
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| T |
11820419 |
atattgccaataaatggccatcccatatgaccagatggcaaaaggtattgattctttcttagtttcaaattatagttaccactcattcaacctccacaca |
11820518 |
T |
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| Q |
100 |
aaaatgttcacacaaaaatagcttgcaaataaaatggcacacatccaaacccagtgttgtattttcatctttgaata |
176 |
Q |
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| T |
11820519 |
aaaatattaacacaaaaatagcttgccaacaaaatggcacacatccgaacccaaaattgtatatccatctttgaata |
11820595 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 232 - 310
Target Start/End: Original strand, 11819219 - 11819297
Alignment:
| Q |
232 |
gttgcatttatctccccctagatgttgtgtcagagttggtgaggatgggatggttcaacattgattagcattgcctttg |
310 |
Q |
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| T |
11819219 |
gttgcatttatcttcccctagattttgtgtcagagttggtgaggatgggatggttcaacattgattagcattgcctttg |
11819297 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 212 - 297
Target Start/End: Original strand, 11805250 - 11805335
Alignment:
| Q |
212 |
tatatctagttcatttgcttgttgcatttatctccccctagatgttgtgtcagagttggtgaggatgggatggttcaacattgatt |
297 |
Q |
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| T |
11805250 |
tatatctagttcatttgcgagttgcatttatctccccctagatcttgtgtcagagttggtgaggatgggatggttcaccattgatt |
11805335 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 11818995 - 11819061
Alignment:
| Q |
1 |
atatttccaataagtggccatcccaaatgaccaggaggcagagggtgctgtttctttcttagtttca |
67 |
Q |
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| T |
11818995 |
atatttccaataagtggccatcccaaatgaccaggaggcagagggtactgtttctttcttagtttca |
11819061 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 80
Target Start/End: Complemental strand, 37431454 - 37431381
Alignment:
| Q |
7 |
ccaataagtggccatcccaaatgaccaggaggcagagggtgctgtttctttcttagtttcatattatagtacca |
80 |
Q |
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| T |
37431454 |
ccaataagtggccatcccatatcacctggaggcaaagggtactctttgtttcttaatttgagatgatagtacca |
37431381 |
T |
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