View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9935_low_23 (Length: 293)

Name: NF9935_low_23
Description: NF9935
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9935_low_23
NF9935_low_23
[»] chr8 (8 HSPs)
chr8 (51-228)||(31183037-31183216)
chr8 (14-240)||(44316143-44316374)
chr8 (46-274)||(29278298-29278532)
chr8 (113-274)||(21256532-21256696)
chr8 (55-279)||(38677817-38678041)
chr8 (222-274)||(9032637-9032689)
chr8 (143-174)||(38641604-38641635)
chr8 (143-174)||(43657165-43657196)
[»] scaffold0086 (1 HSPs)
scaffold0086 (14-240)||(37997-38228)
[»] chr6 (7 HSPs)
chr6 (51-228)||(34234706-34234885)
chr6 (14-240)||(14922613-14922844)
chr6 (14-172)||(34096675-34096837)
chr6 (51-221)||(6950442-6950612)
chr6 (51-219)||(24042271-24042439)
chr6 (61-230)||(15516238-15516408)
chr6 (47-96)||(19975539-19975588)
[»] chr4 (7 HSPs)
chr4 (113-274)||(6685344-6685507)
chr4 (41-272)||(6661022-6661259)
chr4 (51-174)||(6668548-6668670)
chr4 (51-174)||(43291304-43291426)
chr4 (143-174)||(8989815-8989846)
chr4 (205-267)||(56417459-56417520)
chr4 (145-190)||(572521-572568)
[»] chr7 (5 HSPs)
chr7 (113-274)||(2434083-2434246)
chr7 (51-222)||(32353103-32353274)
chr7 (51-174)||(39426924-39427046)
chr7 (51-174)||(31207338-31207460)
chr7 (143-174)||(32354590-32354621)
[»] chr2 (5 HSPs)
chr2 (14-274)||(19436221-19436486)
chr2 (51-174)||(10938743-10938865)
chr2 (51-174)||(10944605-10944727)
chr2 (51-174)||(26969661-26969783)
chr2 (143-172)||(14632156-14632185)
[»] scaffold0014 (1 HSPs)
scaffold0014 (51-201)||(86272-86424)
[»] chr5 (4 HSPs)
chr5 (113-240)||(25635838-25635967)
chr5 (16-107)||(26707931-26708022)
chr5 (16-107)||(26977665-26977756)
chr5 (143-174)||(26052627-26052658)
[»] chr3 (8 HSPs)
chr3 (51-156)||(16357163-16357268)
chr3 (51-228)||(11634925-11635102)
chr3 (51-174)||(53727480-53727602)
chr3 (150-274)||(16363776-16363906)
chr3 (51-129)||(19930864-19930942)
chr3 (51-129)||(42254385-42254463)
chr3 (51-130)||(14657385-14657464)
chr3 (143-174)||(32895395-32895426)
[»] chr1 (5 HSPs)
chr1 (194-274)||(49873935-49874015)
chr1 (51-174)||(49388230-49388352)
chr1 (51-174)||(1968093-1968215)
chr1 (51-172)||(38826148-38826265)
chr1 (143-174)||(24172375-24172406)
[»] scaffold0028 (1 HSPs)
scaffold0028 (79-174)||(127018-127112)


Alignment Details
Target: chr8 (Bit Score: 117; Significance: 1e-59; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 51 - 228
Target Start/End: Complemental strand, 31183216 - 31183037
Alignment:
Q  51 acacccccacaattcttgttgttacgcggttgtgcgctaataggccatgtgtgtgcgcggtattcatgaatgctctagagattttgcaaagatctcatgc 150  Q
    |||||||||||||||||| |||||||||||||||||| ||||||||||| | ||||  ||||||||||| ||||||||||||||||| ||||||||||||    
T  31183216 acacccccacaattcttgctgttacgcggttgtgcgcgaataggccatgcgcgtgcctggtattcatgagtgctctagagattttgccaagatctcatgc 31183117  T
Q  151 aagcggccccacttgacactc--atagatgatttcatcaagtatttgctgcaaatcatacaccacccataagggatatga 228  Q
    |||||||||||||||||||||  ||||  ||||||||||||| | |||||||| ||||||||||||||||||||||||||    
T  31183116 aagcggccccacttgacactcatataggcgatttcatcaagtgtatgctgcaagtcatacaccacccataagggatatga 31183037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 14 - 240
Target Start/End: Complemental strand, 44316374 - 44316143
Alignment:
Q  14 agacacttgtgaatgttagaggtcaatcacttgcatcacacccccacaattcttgttgtta-cgcggttgtgcgctaataggccatgtgtgtgcgcgg-- 110  Q
    ||||||||||| |||||||||||| |||||  ||||| |||||||||||||||||| |||  ||| || |||||| |||||||| || | ||||  ||      
T  44316374 agacacttgtgtatgttagaggtctatcacccgcatcgcacccccacaattcttgtcgttggcgctgtggtgcgcaaataggccgtgcgcgtgcttggat 44316275  T
Q  111 tattcatgaatgctctagagattttgcaaagatctcatgcaagcggccccacttgacactca--tagatgatttcatcaagtatttgctgcaaatcatac 208  Q
    | ||||||| |||||||||||||| || || |||||||||||||||||||||||||||||||  ||| |||||||||||||| | |||||||||||||||    
T  44316274 ttttcatgagtgctctagagatttcgccaatatctcatgcaagcggccccacttgacactcacataggtgatttcatcaagtgtatgctgcaaatcatac 44316175  T
Q  209 accacccataagggatatgaaattcattaaaa 240  Q
    ||||| ||||||||||||||||||||||||||    
T  44316174 accactcataagggatatgaaattcattaaaa 44316143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 46 - 274
Target Start/End: Complemental strand, 29278532 - 29278298
Alignment:
Q  46 gcatcacacccccacaattcttgttgtta-cgcggttgtgcgctaataggccatgtgtgtgcgcgg--tatt-catgaatgctctagagattttgcaaag 141  Q
    |||||||||||||||||||||||| |||  ||| || ||| ||||||||||| || | ||||  ||  |||| ||||| ||| |||||||||| || |||    
T  29278532 gcatcacacccccacaattcttgtcgttggcgctgtggtgtgctaataggccgtgcgcgtgcctggattatttcatgagtgcactagagatttcgccaag 29278433  T
Q  142 atctcatgcaagcggccccacttgacactca--tagatgatttcatcaagtatttgctgcaaatcatacaccacccataagggatatgaaattcattaaa 239  Q
    ||| ||| |||||||||||||||||||||||  |||  ||||||||||||| | ||||||||||||||||||||||| |||||||||||| |||||||||    
T  29278432 atcccatacaagcggccccacttgacactcacataggagatttcatcaagtgtatgctgcaaatcatacaccacccacaagggatatgaagttcattaaa 29278333  T
Q  240 aactttatatgcttatgctctcaataatgcagtgt 274  Q
    | |||| |  |||||| ||||| ||||||||||||    
T  29278332 agctttgttggcttatcctctctataatgcagtgt 29278298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 113 - 274
Target Start/End: Original strand, 21256532 - 21256696
Alignment:
Q  113 ttcatgaatgctctagagattttgcaaagatctcatgcaagcggccccacttgacactca--tagatgatttcatcaagtatttgctgcaaatcatacac 210  Q
    ||||||| ||||| ||||| || || |||||||||| ||||||||||||||||||| |||  ||| |||||||||||||| | || ||||||||||||||    
T  21256532 ttcatgagtgctcaagagagttcgccaagatctcatacaagcggccccacttgacattcacataggtgatttcatcaagtgtatgttgcaaatcatacac 21256631  T
Q  211 cacccataagggatatgaaattcattaaaaactttatatgcttat-gctctcaataatgcagtgt 274  Q
    |||||||||| ||||||||||||||||||| ||||||| ||||||  || |||||||||||||||    
T  21256632 cacccataagagatatgaaattcattaaaagctttataggcttatccctttcaataatgcagtgt 21256696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 55 - 279
Target Start/End: Complemental strand, 38678041 - 38677817
Alignment:
Q  55 ccccacaattcttgttgttacgcggttgtgcgctaataggccatgtgtgtgcgcggtattcatgaatgctctagagattttgcaaagatctcatgcaagc 154  Q
    |||||||||||||| ||||||||||||||||| ||||||||| || | ||||  ||||||| ||| |||||||||||  | || | | ||||||||||||    
T  38678041 ccccacaattcttgctgttacgcggttgtgcgttaataggccgtgcgcgtgcttggtattcgtgagtgctctagagacct-gccacggtctcatgcaagc 38677943  T
Q  155 ggccccacttgacactcatagatg--atttcatcaagtatttgctgcaaatcatacaccacccataagggatatgaaattcattaaaaactttatatgct 252  Q
    ||||||||| ||||| |||| | |  |||||||||||| | | |||||| |||||||||||||||||||||||||| | || || ||| | ||||| | |    
T  38677942 ggccccactcgacacccatataggcgatttcatcaagtgtatactgcaactcatacaccacccataagggatatgataatcgttgaaaccattata-gtt 38677844  T
Q  253 tatgctctcaataatgcagtgtatagt 279  Q
    ||| ||||||||| |||||||| ||||    
T  38677843 tatcctctcaatattgcagtgtctagt 38677817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 222 - 274
Target Start/End: Complemental strand, 9032689 - 9032637
Alignment:
Q  222 gatatgaaattcattaaaaactttatatgcttatgctctcaataatgcagtgt 274  Q
    ||||| |||||||||||||||||||||||||||| |||| ||||||| |||||    
T  9032689 gatataaaattcattaaaaactttatatgcttatcctcttaataatgtagtgt 9032637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 143 - 174
Target Start/End: Original strand, 38641604 - 38641635
Alignment:
Q  143 tctcatgcaagcggccccacttgacactcata 174  Q
    ||||||||||||||||||||||||||||||||    
T  38641604 tctcatgcaagcggccccacttgacactcata 38641635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 143 - 174
Target Start/End: Complemental strand, 43657196 - 43657165
Alignment:
Q  143 tctcatgcaagcggccccacttgacactcata 174  Q
    ||||||||||||||||||||||||||||||||    
T  43657196 tctcatgcaagcggccccacttgacactcata 43657165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 14 - 240
Target Start/End: Original strand, 37997 - 38228
Alignment:
Q  14 agacacttgtgaatgttagaggtcaatcacttgcatcacacccccacaattcttgttgtta-cgcggttgtgcgctaataggccatgtgtgtgcgcgg-- 110  Q
    ||||||||||| |||||||||||| |||||  |||||||||||||||||||||||| |||  ||| || |||||| |||||||| || | ||||  ||      
T  37997 agacacttgtgtatgttagaggtctatcacccgcatcacacccccacaattcttgtcgttggcgctgtggtgcgcaaataggccgtgcgcgtgcttggat 38096  T
Q  111 tattcatgaatgctctagagattttgcaaagatctcatgcaagcggccccacttgacactca--tagatgatttcatcaagtatttgctgcaaatcatac 208  Q
    | ||||||| |||||||||||||| || || |||||||||||||||||||||||||||||||  ||| |||||| ||||||| | |||||||||||||||    
T  38097 ttttcatgagtgctctagagatttcgccaatatctcatgcaagcggccccacttgacactcacataggtgattttatcaagtgtatgctgcaaatcatac 38196  T
Q  209 accacccataagggatatgaaattcattaaaa 240  Q
    ||||||||||||||||||||||||||||||||    
T  38197 accacccataagggatatgaaattcattaaaa 38228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 109; Significance: 7e-55; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 51 - 228
Target Start/End: Complemental strand, 34234885 - 34234706
Alignment:
Q  51 acacccccacaattcttgttgttacgcggttgtgcgctaataggccatgtgtgtgcgcggtattcatgaatgctctagagattttgcaaagatctcatgc 150  Q
    |||||||||||||||||| ||||||||||| |||||||||||||||||| ||||||  | ||||||||| ||||||||||||||||| ||||||||||||    
T  34234885 acacccccacaattcttgctgttacgcggtggtgcgctaataggccatgcgtgtgcctgatattcatgagtgctctagagattttgctaagatctcatgc 34234786  T
Q  151 aagcggccccacttgacactc--atagatgatttcatcaagtatttgctgcaaatcatacaccacccataagggatatga 228  Q
    ||||||||||||||||| |||  ||||  ||||||||||||| | |||||||| ||||||||||| ||||||||||||||    
T  34234785 aagcggccccacttgactctcatataggcgatttcatcaagtgtatgctgcaagtcatacaccacgcataagggatatga 34234706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 14 - 240
Target Start/End: Complemental strand, 14922844 - 14922613
Alignment:
Q  14 agacacttgtgaatgttagaggtcaatcacttgcatcacacccccacaattcttgttgtta-cgcggttgtgcgctaataggccatgtgtgtgcgcggta 112  Q
    |||||||| || ||||||| |||| | |||| ||||||||||||||||||||||||  ||| |||||| |||| |||||||||| || | ||||    |     
T  14922844 agacacttatgtatgttagcggtctaccactcgcatcacacccccacaattcttgtcattaacgcggtggtgcactaataggccgtgcgcgtgccttatt 14922745  T
Q  113 --ttcatgaatgctctagagattttgcaaagatctcatgcaagcggccccacttgacact--catagatgatttcatcaagtatttgctgcaaatcatac 208  Q
      ||||||| ||||||||||||||||| |||||||||| |||||||||||||||||||||  ||||| |||||||||||||| | |||||||||||||||    
T  14922744 atttcatgagtgctctagagattttgccaagatctcatacaagcggccccacttgacactcacataggtgatttcatcaagtgtatgctgcaaatcatac 14922645  T
Q  209 accacccataagggatatgaaattcattaaaa 240  Q
    |||||  ||||| ||||||||| |||||||||    
T  14922644 accacttataagagatatgaaactcattaaaa 14922613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 14 - 172
Target Start/End: Original strand, 34096675 - 34096837
Alignment:
Q  14 agacacttgtgaatgttagaggtcaatcacttgcatcacacccccacaattcttgttgtta-cgcggttgtgcgctaataggccatgtgtgtgcgcgg-- 110  Q
    ||||||||||| |||||||||||| |||||  ||||| |||||||||||||||||| |||  ||| || |||||| |||||||| || | ||||  ||      
T  34096675 agacacttgtgtatgttagaggtctatcacccgcatcgcacccccacaattcttgtcgttggcgctgtggtgcgcaaataggccgtgcgcgtgcttggat 34096774  T
Q  111 -tattcatgaatgctctagagattttgcaaagatctcatgcaagcggccccacttgacactca 172  Q
     | ||||||| |||||||||||||| || || |||||||||||||||||||||||||||||||    
T  34096775 attttcatgagtgctctagagatttcgccaatatctcatgcaagcggccccacttgacactca 34096837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 51 - 221
Target Start/End: Original strand, 6950442 - 6950612
Alignment:
Q  51 acacccccacaattcttgttgttacgcggttgtgcgctaataggccatgtgtgtgcgcggtattcatgaatgctctagagattttgcaaagatctcatgc 150  Q
    |||| ||||||||||||| ||||||||||||||||||||||||| | || ||||||  ||||||||||| |||||| |||| |  || | | ||||||||    
T  6950442 acactcccacaattcttgctgttacgcggttgtgcgctaataggtcgtgcgtgtgcctggtattcatgagtgctctggaga-tccgccacggtctcatgc 6950540  T
Q  151 aagcggccccacttgacactc--atagatgatttcatcaagtatttgctgcaaatcatacaccacccataagg 221  Q
    |||| ||||||||||||||||  |||| ||||| |||| ||| | |||| | ||||| |||||||||||||||    
T  6950541 aagcagccccacttgacactcatataggtgattccatctagtgtatgctac-aatcaaacaccacccataagg 6950612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 51 - 219
Target Start/End: Original strand, 24042271 - 24042439
Alignment:
Q  51 acacccccacaattcttgttgttacgcggttgtgcgctaataggccatgtgtgtgcgcggtattcatgaatgctctagagattttgcaaagatctcatgc 150  Q
    ||||||||| |||||||| ||||||||||||||||||||||||||  || | ||||  ||||||| ||| |||||||||||    || | | ||||||||    
T  24042271 acacccccataattcttgctgttacgcggttgtgcgctaataggctgtgcgcgtgcctggtattcgtgagtgctctagagaccc-gccacggtctcatgc 24042369  T
Q  151 aagcggccccacttgacactcataga--tgatttcatcaagtatttgctgcaaatcatacaccacccataa 219  Q
    |||||||||||||||||||||||| |  ||||| |||| ||| | |||| |||  ||||||||||||||||    
T  24042370 aagcggccccacttgacactcatataggtgattccatctagtgtatgctacaac-catacaccacccataa 24042439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 61 - 230
Target Start/End: Complemental strand, 15516408 - 15516238
Alignment:
Q  61 aattcttgttgttacgcggttgtgcgctaataggccatgtgtgtgcgcggtattcatgaatgctctagagattttgcaaagatctcatgcaagcggcccc 160  Q
    |||| ||| ||||||||| |||||||| ||||||||| | | |||   ||| ||||||| |||||||||||    || | | ||||||||||||||| ||    
T  15516408 aattgttgctgttacgcgattgtgcgcgaataggccaagcgcgtgtctggtcttcatgagtgctctagagaccc-gccacggtctcatgcaagcggctcc 15516310  T
Q  161 acttgacactcatagatg--atttcatcaagtatttgctgcaaatcatacaccacccataagggatatgaaa 230  Q
    ||||||||| |||| | |  |||||||||||| | || ||||| ||||||||||| ||||||||||||||||    
T  15516309 acttgacacccatataggcaatttcatcaagtgtatgttgcaagtcatacaccactcataagggatatgaaa 15516238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 47 - 96
Target Start/End: Complemental strand, 19975588 - 19975539
Alignment:
Q  47 catcacacccccacaattcttgttgttacgcggttgtgcgctaataggcc 96  Q
    |||||||||||||||||||||| ||||||| |||||||||||||||||||    
T  19975588 catcacacccccacaattcttgctgttacgtggttgtgcgctaataggcc 19975539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 101; Significance: 4e-50; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 113 - 274
Target Start/End: Complemental strand, 6685507 - 6685344
Alignment:
Q  113 ttcatgaatgctctagagattttgcaaagatctcatgcaagcggccccacttgacactca--tagatgatttcatcaagtatttgctgcaaatcatacac 210  Q
    ||||||| ||||| |||||||| |  |||||||||| |||||||||||||||||||||||  ||| |||||||||||||| | |||||||||||||||||    
T  6685507 ttcatgagtgctcaagagatttcgtcaagatctcatacaagcggccccacttgacactcacataggtgatttcatcaagtgtatgctgcaaatcatacac 6685408  T
Q  211 cacccataagggatatgaaattcattaaaaactttatatgcttatgctctcaataatgcagtgt 274  Q
    |||||||||||||||||||||||||||||||||||||| ||||||  ||||| |||||||||||    
T  6685407 cacccataagggatatgaaattcattaaaaactttataggcttatcatctcagtaatgcagtgt 6685344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 41 - 272
Target Start/End: Original strand, 6661022 - 6661259
Alignment:
Q  41 cacttgcatcacacccccacaattcttgttgtta-cgcggttgtgcgctaataggccatgtgtgtgcgcggta---ttcatgaatgctctagagattttg 136  Q
    |||| |||||||||||||||| ||||||| |||  ||| || |||||| ||||||||||| | ||||  || |   ||||||| ||||| |||||||| |    
T  6661022 cactcgcatcacacccccacatttcttgtcgttggcgctgtggtgcgcgaataggccatgcgcgtgcctggaaattttcatgagtgctccagagatttcg 6661121  T
Q  137 caaagatctcatgcaagcggccccacttgacactca--tagatgatttcatcaagtatttgctgcaaatcatacaccacccataagggatatgaaattca 234  Q
    |  ||||||||| |||||||||||||||||||||||  ||| ||||||||||||||   || ||||||||||||||||||||||||||||||||||||||    
T  6661122 ccgagatctcatacaagcggccccacttgacactcacataggtgatttcatcaagtgcatgatgcaaatcatacaccacccataagggatatgaaattca 6661221  T
Q  235 ttaaaaactttatatgcttatgctctcaataatgcagt 272  Q
    |||||| ||| |||  ||||| |||||| |||||||||    
T  6661222 ttaaaagcttgatagacttatcctctcagtaatgcagt 6661259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 51 - 174
Target Start/End: Original strand, 6668548 - 6668670
Alignment:
Q  51 acacccccacaattcttgttgttacgcggttgtgcgctaataggccatgtgtgtgcgcggtattcatgaatgctctagagattttgcaaagatctcatgc 150  Q
    |||||||||||||||||| |||||||||||||| |||||||||||| || | ||||  ||||||||||| |||||||||||   ||| | | |||||| |    
T  6668548 acacccccacaattcttgctgttacgcggttgtccgctaataggccttgcgcgtgcctggtattcatgagtgctctagaga-cctgccacggtctcatac 6668646  T
Q  151 aagcggccccacttgacactcata 174  Q
    ||||||||||||||||||||||||    
T  6668647 aagcggccccacttgacactcata 6668670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 51 - 174
Target Start/End: Complemental strand, 43291426 - 43291304
Alignment:
Q  51 acacccccacaattcttgttgttacgcggttgtgcgctaataggccatgtgtgtgcgcggtattcatgaatgctctagagattttgcaaagatctcatgc 150  Q
    ||||||||||||||||||||||||||||||||||| |||||||||| || | ||||  ||||||||||| |||||||||||    || | | |||||| |    
T  43291426 acacccccacaattcttgttgttacgcggttgtgccctaataggccgtgcgcgtgcctggtattcatgagtgctctagaga-cccgccacggtctcatac 43291328  T
Q  151 aagcggccccacttgacactcata 174  Q
    ||||||||||||||||||||||||    
T  43291327 aagcggccccacttgacactcata 43291304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 143 - 174
Target Start/End: Original strand, 8989815 - 8989846
Alignment:
Q  143 tctcatgcaagcggccccacttgacactcata 174  Q
    ||||||||||||||||||||||||||||||||    
T  8989815 tctcatgcaagcggccccacttgacactcata 8989846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 205 - 267
Target Start/End: Complemental strand, 56417520 - 56417459
Alignment:
Q  205 atacaccacccataagggatatgaaattcattaaaaactttatatgcttatgctctcaataat 267  Q
    ||||||||| | |||| ||||||||| ||||||||||||||||| |||||  |||||||||||    
T  56417520 atacaccacacgtaagcgatatgaaaatcattaaaaactttata-gcttaccctctcaataat 56417459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 145 - 190
Target Start/End: Original strand, 572521 - 572568
Alignment:
Q  145 tcatgcaagcggccccacttgacact--catagatgatttcatcaagt 190  Q
    |||| |||||||||||||||||||||  ||||| ||||||||||||||    
T  572521 tcatacaagcggccccacttgacactcacataggtgatttcatcaagt 572568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 93; Significance: 3e-45; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 113 - 274
Target Start/End: Complemental strand, 2434246 - 2434083
Alignment:
Q  113 ttcatgaatgctctagagattttgcaaagatctcatgcaagcggccccacttgacactca--tagatgatttcatcaagtatttgctgcaaatcatacac 210  Q
    ||||||| ||||||||||||||||  |||||||||| || ||||||||||||||||||||  ||| ||||||| |||||| | |||||||||||||||||    
T  2434246 ttcatgagtgctctagagattttgtcaagatctcatacaggcggccccacttgacactcacataggtgatttcttcaagtgtatgctgcaaatcatacac 2434147  T
Q  211 cacccataagggatatgaaattcattaaaaactttatatgcttatgctctcaataatgcagtgt 274  Q
    ||||||||||||||||||||||||||||||  |||||| |||||| |||||| ||||| |||||    
T  2434146 cacccataagggatatgaaattcattaaaagttttataggcttatcctctcattaatggagtgt 2434083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 51 - 222
Target Start/End: Original strand, 32353103 - 32353274
Alignment:
Q  51 acacccccacaattcttgttgttacgcggttgtgcgctaataggccatgtgtgtgcgcggtattcatgaatgctctagagattttgcaaagatctcatgc 150  Q
    |||||||||||||||||||||||||||||||||||||||||||||| || | ||||  |||||| |||| ||||| |||||    || | | ||||||||    
T  32353103 acacccccacaattcttgttgttacgcggttgtgcgctaataggccgtgcgcgtgcctggtatttatgagtgctccagaga-cccgccacggtctcatgc 32353201  T
Q  151 aagcggccccacttgacactc--atagatgatttcatcaagtatttgctgcaaatcatacaccacccataaggg 222  Q
    |||||||||||||||||||||  |||| |||||||||| ||| | |||| |  | |||||||||||||||||||    
T  32353202 aagcggccccacttgacactcatataggtgatttcatctagtgtatgctac-gaccatacaccacccataaggg 32353274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 51 - 174
Target Start/End: Original strand, 39426924 - 39427046
Alignment:
Q  51 acacccccacaattcttgttgttacgcggttgtgcgctaataggccatgtgtgtgcgcggtattcatgaatgctctagagattttgcaaagatctcatgc 150  Q
    |||||||||||||||||| |||||| |||||||||| ||||||||| || | ||||  ||||||||||| |||||||||||    || | | ||||||||    
T  39426924 acacccccacaattcttgctgttacacggttgtgcggtaataggccgtgcgcgtgcctggtattcatgagtgctctagaga-cccgccacggtctcatgc 39427022  T
Q  151 aagcggccccacttgacactcata 174  Q
    ||||||||||||||||||||||||    
T  39427023 aagcggccccacttgacactcata 39427046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 51 - 174
Target Start/End: Original strand, 31207338 - 31207460
Alignment:
Q  51 acacccccacaattcttgttgttacgcggttgtgcgctaataggccatgtgtgtgcgcggtattcatgaatgctctagagattttgcaaagatctcatgc 150  Q
    |||||||||||||||||| |||||||||||||| |||||||||||| || | |||   ||||||||||| |||||||||||    || |   ||||||||    
T  31207338 acacccccacaattcttgctgttacgcggttgttcgctaataggccgtgcgcgtggctggtattcatgagtgctctagaga-cccgccactgtctcatgc 31207436  T
Q  151 aagcggccccacttgacactcata 174  Q
    ||||||||||| ||||||||||||    
T  31207437 aagcggccccaattgacactcata 31207460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 143 - 174
Target Start/End: Complemental strand, 32354621 - 32354590
Alignment:
Q  143 tctcatgcaagcggccccacttgacactcata 174  Q
    ||||||||||||||||||||||||||||||||    
T  32354621 tctcatgcaagcggccccacttgacactcata 32354590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 88; Significance: 2e-42; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 14 - 274
Target Start/End: Complemental strand, 19436486 - 19436221
Alignment:
Q  14 agacacttgtgaatgttagaggtcaatcacttgcatcacacccccacaattcttgttgtta-cgcggttgtgcgctaataggccatgtgtgtgcgcggt- 111  Q
    |||||||| || ||||||| |||| | |||| | ||||||||||||||||||||  ||||| ||| || ||||||||||||||  ||   || |  |||     
T  19436486 agacacttatgtatgttagcggtctaccactcgaatcacacccccacaattcttactgttaacgctgtggtgcgctaataggctgtgctcgtacctggtt 19436387  T
Q  112 -attcatgaatgctctagagattttgcaaagatctcatgcaagcggccccacttgacactca--tagatgatttcatcaagtatttgctgcaaatcatac 208  Q
     |||||||| ||||| ||| |||| || |||||||||| ||| ||| |||||||||||||||  ||| |||||||||||||| | ||||| |||||||||    
T  19436386 aattcatgagtgctccagatatttcgccaagatctcatacaaacgggcccacttgacactcacataggtgatttcatcaagtgtatgctgaaaatcatac 19436287  T
Q  209 accacccataagggatatgaaattcattaaaaactttatatgcttatgctctcaataatgcagtgt 274  Q
    |||||||||||||||||||||||||||||||| ||  | || ||||| ||||||||||||||||||    
T  19436286 accacccataagggatatgaaattcattaaaagctacaaatacttatcctctcaataatgcagtgt 19436221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 51 - 174
Target Start/End: Original strand, 10938743 - 10938865
Alignment:
Q  51 acacccccacaattcttgttgttacgcggttgtgcgctaataggccatgtgtgtgcgcggtattcatgaatgctctagagattttgcaaagatctcatgc 150  Q
    |||||||||||||||||| |||||||||||||||| | ||||||||||| | ||||  ||||||||||| |||||||||||    || | | |||||| |    
T  10938743 acacccccacaattcttgctgttacgcggttgtgcacgaataggccatgcgcgtgcctggtattcatgagtgctctagaga-cccgccacggtctcatac 10938841  T
Q  151 aagcggccccacttgacactcata 174  Q
    |||||||||||||||| |||||||    
T  10938842 aagcggccccacttgaaactcata 10938865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 51 - 174
Target Start/End: Original strand, 10944605 - 10944727
Alignment:
Q  51 acacccccacaattcttgttgttacgcggttgtgcgctaataggccatgtgtgtgcgcggtattcatgaatgctctagagattttgcaaagatctcatgc 150  Q
    |||||||||||||||||| |||||||||||||||| | ||||||||||| | ||||  ||||||||||| |||||||||||    || | | |||||| |    
T  10944605 acacccccacaattcttgctgttacgcggttgtgcacgaataggccatgcgcgtgcctggtattcatgagtgctctagaga-cccgccacggtctcatac 10944703  T
Q  151 aagcggccccacttgacactcata 174  Q
    |||||||||||||||| |||||||    
T  10944704 aagcggccccacttgaaactcata 10944727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 51 - 174
Target Start/End: Original strand, 26969661 - 26969783
Alignment:
Q  51 acacccccacaattcttgttgttacgcggttgtgcgctaataggccatgtgtgtgcgcggtattcatgaatgctctagagattttgcaaagatctcatgc 150  Q
    |||||||| ||| ||| | |||||||| ||||||||||||||||||||| | |||   |||||||||||||||||||||||    || | | ||||||||    
T  26969661 acacccccgcaaatctagctgttacgccgttgtgcgctaataggccatgcgcgtgtctggtattcatgaatgctctagaga-cccgccacggtctcatgc 26969759  T
Q  151 aagcggccccacttgacactcata 174  Q
    ||||||||||||||||||||||||    
T  26969760 aagcggccccacttgacactcata 26969783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 172
Target Start/End: Original strand, 14632156 - 14632185
Alignment:
Q  143 tctcatgcaagcggccccacttgacactca 172  Q
    ||||||||||||||||||||||||||||||    
T  14632156 tctcatgcaagcggccccacttgacactca 14632185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 82; Significance: 9e-39; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 51 - 201
Target Start/End: Complemental strand, 86424 - 86272
Alignment:
Q  51 acacccccacaattcttgttgttacgcggttgtgcgctaataggccatgtgtgtgcgcggtattcatgaatgctctagagattttgcaaagatctcatgc 150  Q
    ||||| ||||||||||||||||||| |||||||||||||||| |||||| | |||   ||||||||||| || |||||||||||||| ||||||||||||    
T  86424 acacctccacaattcttgttgttacacggttgtgcgctaatacgccatgcgcgtgtctggtattcatgagtgttctagagattttgccaagatctcatgc 86325  T
Q  151 aagcggccccacttgacactc--atagatgatttcatcaagtatttgctgcaa 201  Q
    |||||||||||||||||||||  ||||  ||||||||||||| | ||||||||    
T  86324 aagcggccccacttgacactcatataggcgatttcatcaagtctatgctgcaa 86272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 71; Significance: 3e-32; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 113 - 240
Target Start/End: Original strand, 25635838 - 25635967
Alignment:
Q  113 ttcatgaatgctctagagattttgcaaagatctcatgcaagcggccccacttgacactca--tagatgatttcatcaagtatttgctgcaaatcatacac 210  Q
    ||||||| ||||| |||||||| || |||||| ||| ||||||  |||||||||||||||  ||| ||||||||||||||   |||||||||||||||||    
T  25635838 ttcatgagtgctccagagatttcgccaagatcacatacaagcgatcccacttgacactcacataggtgatttcatcaagtgcatgctgcaaatcatacac 25635937  T
Q  211 cacccataagggatatgaaattcattaaaa 240  Q
    ||||||||||||||||||||||||||||||    
T  25635938 cacccataagggatatgaaattcattaaaa 25635967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 16 - 107
Target Start/End: Original strand, 26707931 - 26708022
Alignment:
Q  16 acacttgtgaatgttagaggtcaatcacttgcatcacacccccacaattcttgttgttacgcggttgtgcgctaataggccatgtgtgtgcg 107  Q
    ||||||||| |||||||||||||||  | ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||    
T  26707931 acacttgtgtatgttagaggtcaatatcctgcatcacacccccacaattcttgttgctacgcggttgtgcgctaataggccatgcgtgtgcg 26708022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 16 - 107
Target Start/End: Original strand, 26977665 - 26977756
Alignment:
Q  16 acacttgtgaatgttagaggtcaatcacttgcatcacacccccacaattcttgttgttacgcggttgtgcgctaataggccatgtgtgtgcg 107  Q
    ||||||||| |||||||||||||||  | ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||    
T  26977665 acacttgtgtatgttagaggtcaatatcctgcatcacacccccacaattcttgttgctacgcggttgtgcgctaataggccatgcgtgtgcg 26977756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 143 - 174
Target Start/End: Complemental strand, 26052658 - 26052627
Alignment:
Q  143 tctcatgcaagcggccccacttgacactcata 174  Q
    ||||||||||||||||||||||||||||||||    
T  26052658 tctcatgcaagcggccccacttgacactcata 26052627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 70; Significance: 1e-31; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 51 - 156
Target Start/End: Original strand, 16357163 - 16357268
Alignment:
Q  51 acacccccacaattcttgttgttacgcggttgtgcgctaataggccatgtgtgtgcgcggtattcatgaatgctctagagattttgcaaagatctcatgc 150  Q
    |||||| ||||||||||||||||||||||||||||||||||||||| |||| | ||   |||||||||| ||||||||||||||||| ||||||||||||    
T  16357163 acaccctcacaattcttgttgttacgcggttgtgcgctaataggccgtgtgcgggcctagtattcatgactgctctagagattttgccaagatctcatgc 16357262  T
Q  151 aagcgg 156  Q
    ||||||    
T  16357263 aagcgg 16357268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 51 - 228
Target Start/End: Original strand, 11634925 - 11635102
Alignment:
Q  51 acacccccacaattcttgttgttacgcggttgtgcgctaataggccatgtgtgtgcgcggtattcatgaatgctctagagattttgcaaagatctcatgc 150  Q
    ||||||||  ||||||||||||||| | |||||||| ||||||| |||| | ||||  | ||||||||| ||||||||||||||||| ||||||| ||||    
T  11634925 acacccccctaattcttgttgttacacagttgtgcgttaataggtcatgcgcgtgcctgatattcatgagtgctctagagattttgctaagatct-atgc 11635023  T
Q  151 aagcggccccacttgacactcataga--tgatttcatcaagtatttgctgcaaatcatacaccacccataagggatatga 228  Q
    |||||| ||||||||||||||||| |   |||||||||||| || | ||| || ||||||| | ||||||||||||||||    
T  11635024 aagcggtcccacttgacactcatataagagatttcatcaag-atattctgaaagtcatacatctcccataagggatatga 11635102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 51 - 174
Target Start/End: Original strand, 53727480 - 53727602
Alignment:
Q  51 acacccccacaattcttgttgttacgcggttgtgcgctaataggccatgtgtgtgcgcggtattcatgaatgctctagagattttgcaaagatctcatgc 150  Q
    ||||||||| |||||| | | |||||| ||||||||||||||||||||| | ||||  ||||||||||| |||||||||||    || | | ||||||||    
T  53727480 acacccccagaattctagctattacgccgttgtgcgctaataggccatgcgcgtgcctggtattcatgagtgctctagaga-cccgccacggtctcatgc 53727578  T
Q  151 aagcggccccacttgacactcata 174  Q
    ||||||||||||||||||||||||    
T  53727579 aagcggccccacttgacactcata 53727602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 150 - 274
Target Start/End: Original strand, 16363776 - 16363906
Alignment:
Q  150 caagcggccccacttgacactcatagatg--atttcatcaagtatttgctgcaaatcatacaccacccataagggatatgaaattcattaaaaactttat 247  Q
    ||||||||||||||||||||||||| | |  |||||||||||| | |||||||| |||||||||||||||||||||||||| | || || ||| | ||||    
T  16363776 caagcggccccacttgacactcatataggcgatttcatcaagtgtatgctgcaagtcatacaccacccataagggatatgataatcgttgaaagcattat 16363875  T
Q  248 at----gcttatgctctcaataatgcagtgt 274  Q
    ||    |||||| ||||||||| ||||||||    
T  16363876 attgtagcttatcctctcaatattgcagtgt 16363906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 51 - 129
Target Start/End: Original strand, 19930864 - 19930942
Alignment:
Q  51 acacccccacaattcttgttgttacgcggttgtgcgctaataggccatgtgtgtgcgcggtattcatgaatgctctaga 129  Q
    ||||||||||||||||||||||||| | |||||||||||||||||| |  | ||||  ||||||||||| |||||||||    
T  19930864 acacccccacaattcttgttgttacacagttgtgcgctaataggccgtacgcgtgcctggtattcatgagtgctctaga 19930942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 51 - 129
Target Start/End: Original strand, 42254385 - 42254463
Alignment:
Q  51 acacccccacaattcttgttgttacgcggttgtgcgctaataggccatgtgtgtgcgcggtattcatgaatgctctaga 129  Q
    |||||||||||||||||| ||||| | |||||| |||||||||||| || | |||   |||||||||||||||||||||    
T  42254385 acacccccacaattcttgatgttatgtggttgtacgctaataggccgtgcgcgtgtctggtattcatgaatgctctaga 42254463  T

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Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 51 - 130
Target Start/End: Complemental strand, 14657464 - 14657385
Alignment:
Q  51 acacccccacaattcttgttgttacgcggttgtgcgctaataggccatgtgtgtgcgcggtattcatgaatgctctagag 130  Q
    |||||||||||||||| | | ||| |||||||||||||||||| || || | ||||  ||||||||||| ||||||||||    
T  14657464 acacccccacaattctagctattatgcggttgtgcgctaatagaccgtgcgcgtgcctggtattcatgagtgctctagag 14657385  T

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Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 143 - 174
Target Start/End: Complemental strand, 32895426 - 32895395
Alignment:
Q  143 tctcatgcaagcggccccacttgacactcata 174  Q
    ||||||||||||||||||||||||||||||||    
T  32895426 tctcatgcaagcggccccacttgacactcata 32895395  T

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Target: chr1 (Bit Score: 61; Significance: 3e-26; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 194 - 274
Target Start/End: Original strand, 49873935 - 49874015
Alignment:
Q  194 tgctgcaaatcatacaccacccataagggatatgaaattcattaaaaactttatatgcttatgctctcaataatgcagtgt 274  Q
    ||||||||||||||||||||||| |||||||||||||||| |||||| |||| ||||||||| ||||||||||||||||||    
T  49873935 tgctgcaaatcatacaccacccacaagggatatgaaattcgttaaaagctttgtatgcttatcctctcaataatgcagtgt 49874015  T

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Target: chr1; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 51 - 174
Target Start/End: Original strand, 49388230 - 49388352
Alignment:
Q  51 acacccccacaattcttgttgttacgcggttgtgcgctaataggccatgtgtgtgcgcggtattcatgaatgctctagagattttgcaaagatctcatgc 150  Q
    |||||||||||||||||| ||||||||||||||||||||| ||||| |||| ||||  | ||||||||| || ||||||||    || | | ||||||||    
T  49388230 acacccccacaattcttgctgttacgcggttgtgcgctaagaggccgtgtgcgtgcctgatattcatgagtgttctagaga-cccgccatggtctcatgc 49388328  T
Q  151 aagcggccccacttgacactcata 174  Q
    ||||||||||||||||||||||||    
T  49388329 aagcggccccacttgacactcata 49388352  T

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Target: chr1; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 51 - 174
Target Start/End: Complemental strand, 1968215 - 1968093
Alignment:
Q  51 acacccccacaattcttgttgttacgcggttgtgcgctaataggccatgtgtgtgcgcggtattcatgaatgctctagagattttgcaaagatctcatgc 150  Q
    |||||||||||||||||| |||||||||||||| |||||||||| | || | ||||  | ||||||||| |||||||||||    || | | ||||||||    
T  1968215 acacccccacaattcttgctgttacgcggttgtccgctaataggtcgtgcgcgtgcctgatattcatgagtgctctagaga-cccgccacggtctcatgc 1968117  T
Q  151 aagcggccccacttgacactcata 174  Q
    ||||||||||||||||||||||||    
T  1968116 aagcggccccacttgacactcata 1968093  T

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Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 51 - 172
Target Start/End: Original strand, 38826148 - 38826265
Alignment:
Q  51 acacccccacaattcttgttgttacgcggttgtgcgctaataggccatgtgtgtgcgcggtattcatgaatgctctagagattttgcaaagatctcatgc 150  Q
    |||||||||||||||||||   |||||||||||| |||||||| || || | || |  ||||||||||| |||||||||||    || |  |||||||||    
T  38826148 acacccccacaattcttgt---tacgcggttgtgtgctaatagaccgtgcgcgtacttggtattcatgagtgctctagaga-ccagccacaatctcatgc 38826243  T
Q  151 aagcggccccacttgacactca 172  Q
    ||||||||||||||||||||||    
T  38826244 aagcggccccacttgacactca 38826265  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 143 - 174
Target Start/End: Complemental strand, 24172406 - 24172375
Alignment:
Q  143 tctcatgcaagcggccccacttgacactcata 174  Q
    ||||||||||||||||||||||||||||||||    
T  24172406 tctcatgcaagcggccccacttgacactcata 24172375  T

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Target: scaffold0028 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 79 - 174
Target Start/End: Complemental strand, 127112 - 127018
Alignment:
Q  79 gttgtgcgctaataggccatgtgtgtgcgcggtattcatgaatgctctagagattttgcaaagatctcatgcaagcggccccacttgacactcata 174  Q
    ||||||||||||||| ||||| | ||||  ||||||| ||| |||||||||||    || | | ||||||||||||||||||||||||||||||||    
T  127112 gttgtgcgctaatagaccatgcgcgtgcctggtattcttgagtgctctagagaccc-gccacggtctcatgcaagcggccccacttgacactcata 127018  T

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