View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9935_low_28 (Length: 269)
Name: NF9935_low_28
Description: NF9935
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9935_low_28 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 19 - 257
Target Start/End: Original strand, 36465781 - 36466019
Alignment:
| Q |
19 |
tttaaagctacccgttcctgcctcattttatttcaatagctcttggcattatctatacaacaattatatgaaacttaaatggagtatatgattttaccga |
118 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36465781 |
tttaaagctacctgttcctgcctcattttatttcaatagctcttggcattatctatacaacaattatatgaaacttaaatggagtatatgattttaccga |
36465880 |
T |
|
| Q |
119 |
tattgagttgatatctttattttctaattttaagttatgcaacaaaatcaatacaatctgttataaagatagtgctgcctctttcaagttgaagtaatat |
218 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
36465881 |
tattgtgttgatatctttattttctaattttaagttatgcaacaaaatcaatacaatctgttataaagatagtgctgcctctttcaaattgaagtaatat |
36465980 |
T |
|
| Q |
219 |
tgcaaaccatatcccacattagcagcgccatatagtttt |
257 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36465981 |
tgcaaaccatatcccacattagcagcgccatatagtttt |
36466019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University