View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9935_low_29 (Length: 259)
Name: NF9935_low_29
Description: NF9935
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9935_low_29 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 232; Significance: 1e-128; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 17 - 259
Target Start/End: Original strand, 52698013 - 52698256
Alignment:
| Q |
17 |
aactttgaactgttttatggattttc-agtgaacgaggttgtagagaggtttgcgttcttgggacttactgtgaacttgaccaattacttgataagtcaa |
115 |
Q |
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| T |
52698013 |
aactttgaactgttttatggattttccagtgaacgaggttgtagagaggtttgcgttcttgggacttactgtgaacttgaccaattacttgataagtcaa |
52698112 |
T |
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| Q |
116 |
atgaatgaaacaattccagatgctgctactcatgtcacagactggactggagctgcttatgtcctcactatctttggagcgtttattgcagatgcttacc |
215 |
Q |
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| T |
52698113 |
atgaatgaaacaattccagatgctgctactcatgtcacagactggactggagctgcttatgtcctcactatctttggagcgtttattgcagatgcttacc |
52698212 |
T |
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| Q |
216 |
ttggtcgatttagaaccatcattgttttctctaccatctctgct |
259 |
Q |
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| T |
52698213 |
ttggtcgatttagaaccatcattgttttctctaccatctatgct |
52698256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 39 - 246
Target Start/End: Original strand, 52711706 - 52711913
Alignment:
| Q |
39 |
tttcagtgaacgaggttgtagagaggtttgcgttcttgggacttactgtgaacttgaccaattacttgataagtcaaatgaatgaaacaattccagatgc |
138 |
Q |
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| T |
52711706 |
tttcagtgaacgaggtgatagagaggttggcgttctttgcgattgcagtgaatatgacggcttacttggtatttcaaatgcatcaatcgcttccagatgc |
52711805 |
T |
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| Q |
139 |
tgctactcatgtcacagactggactggagctgcttatgtcctcactatctttggagcgtttattgcagatgcttaccttggtcgatttagaaccatcatt |
238 |
Q |
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| T |
52711806 |
tgctactcatgtcacagactggattggagctgcctatgtactcaccctctttggagcatttctagcagatgcttattttggtcgcttcaaaactatcatt |
52711905 |
T |
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| Q |
239 |
gttttctc |
246 |
Q |
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| T |
52711906 |
gttttctc |
52711913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 112 - 246
Target Start/End: Original strand, 52720658 - 52720792
Alignment:
| Q |
112 |
tcaaatgaatgaaacaattccagatgctgctactcatgtcacagactggactggagctgcttatgtcctcactatctttggagcgtttattgcagatgct |
211 |
Q |
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| T |
52720658 |
tcaaatgcatcaatcacttccggatgctgctactcatgtcacagactgggctggagctgcctatgtactcaccctctttggagcatttctagcagatgct |
52720757 |
T |
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| Q |
212 |
taccttggtcgatttagaaccatcattgttttctc |
246 |
Q |
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| T |
52720758 |
tatttgggtcgcttcaaaactattattgttttctc |
52720792 |
T |
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