View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9935_low_31 (Length: 253)
Name: NF9935_low_31
Description: NF9935
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9935_low_31 |
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Alignment Details
Target: chr7 (Bit Score: 206; Significance: 1e-113; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 17 - 234
Target Start/End: Complemental strand, 46524832 - 46524615
Alignment:
| Q |
17 |
cacagatggaaggaatagaacacagaagagtggaagtgaatggaatcaaaatgcatattgctgagaaaggaaaagaaggaccagttgtcttgttccttca |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |
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| T |
46524832 |
cacagatggaaggaatagaacacagaagagtggaagtgaatggaatcaaaatgcatattgctgagaaaggtaaagaaggacctgttgtcttgttccttca |
46524733 |
T |
|
| Q |
117 |
tggcttcccagaactctggtattcatggcgccaccagaatgtagctctcagctccctcggctaccgtgctgttgctcccgatctccgtggctatggtgac |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46524732 |
tggcttcccagaactctggtattcatggcgccaccagattgtagctctcagctccctcggctaccgtgctgttgctcccgatctccgtggctatggtgac |
46524633 |
T |
|
| Q |
217 |
accgatgctccgtcttca |
234 |
Q |
| |
|
|||||||||||||||||| |
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|
| T |
46524632 |
accgatgctccgtcttca |
46524615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 20 - 234
Target Start/End: Complemental strand, 46532382 - 46532168
Alignment:
| Q |
20 |
agatggaaggaatagaacacagaagagtggaagtgaatggaatcaaaatgcatattgctgagaaaggaaaagaaggaccagttgtcttgttccttcatgg |
119 |
Q |
| |
|
|||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |
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| T |
46532382 |
agatggaaggaatagaacacagaacagtggaggtgaatggaatcaaaatgcatattgctgaaaaaggaaaagaaggacctgttgtcttgttccttcatgg |
46532283 |
T |
|
| Q |
120 |
cttcccagaactctggtattcatggcgccaccagaatgtagctctcagctccctcggctaccgtgctgttgctcccgatctccgtggctatggtgacacc |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||| | ||||||||| |||||||||| ||||| || |||||||| ||||| |||||||||||||||||| |
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| T |
46532282 |
cttcccagaactctggtattcatggcgccaccaaattgtagctcttggctccctcggttaccgcgccgttgctccagatctgcgtggctatggtgacacc |
46532183 |
T |
|
| Q |
220 |
gatgctccgtcttca |
234 |
Q |
| |
|
|| ||||| |||||| |
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| T |
46532182 |
gaggctccatcttca |
46532168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 20 - 233
Target Start/End: Original strand, 46326435 - 46326648
Alignment:
| Q |
20 |
agatggaaggaatagaacacagaagagtggaagtgaatggaatcaaaatgcatattgctgagaaaggaaaagaaggaccagttgtcttgttccttcatgg |
119 |
Q |
| |
|
|||||||| |||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||| || |
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| T |
46326435 |
agatggaaagaatagaacatagaacagtggaagtgaatggaatcaaaatgcatattgctgagaaaggtaaagaaggacctgttgttttgttccttcacgg |
46326534 |
T |
|
| Q |
120 |
cttcccagaactctggtattcatggcgccaccagaatgtagctctcagctccctcggctaccgtgctgttgctcccgatctccgtggctatggtgacacc |
219 |
Q |
| |
|
||| || ||||||||||| || ||||||||||||| || |||||| | |||||||| ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
46326535 |
ctttcctgaactctggtactcttggcgccaccagattgcggctctcggatccctcggttaccgtgctgttgctcccgatctccgtggctatggtgacaca |
46326634 |
T |
|
| Q |
220 |
gatgctccgtcttc |
233 |
Q |
| |
|
|||| ||||||||| |
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| T |
46326635 |
gatgttccgtcttc |
46326648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 20 - 227
Target Start/End: Complemental strand, 46479333 - 46479126
Alignment:
| Q |
20 |
agatggaaggaatagaacacagaagagtggaagtgaatggaatcaaaatgcatattgctgagaaaggaaaagaaggaccagttgtcttgttccttcatgg |
119 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||| || |
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|
| T |
46479333 |
agatggaaggaatagaacacagaacggtggaagtgaatggcatcaaaatgcatattgcagagaaaggaaaagaaggtccagttgttttgttccttcacgg |
46479234 |
T |
|
| Q |
120 |
cttcccagaactctggtattcatggcgccaccagaatgtagctctcagctccctcggctaccgtgctgttgctcccgatctccgtggctatggtgacacc |
219 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||| || ||||| |||||||||| ||||||||||||||||| ||||| |||||||| || |||||| |
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|
| T |
46479233 |
cttccctgaactctggtattcatggcgccaccagattgctgctcttggctccctcggttaccgtgctgttgctccagatcttcgtggctacggcgacacc |
46479134 |
T |
|
| Q |
220 |
gatgctcc |
227 |
Q |
| |
|
|||||||| |
|
|
| T |
46479133 |
gatgctcc |
46479126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 21 - 227
Target Start/End: Complemental strand, 46520762 - 46520556
Alignment:
| Q |
21 |
gatggaaggaatagaacacagaagagtggaagtgaatggaatcaaaatgcatattgctgagaaaggaaaagaaggaccagttgtcttgttccttcatggc |
120 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||| ||| |
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|
| T |
46520762 |
gatggaaggaatagaacacagaacggtggaagtgaatggcatcaaaatgcatattgcagagaaaggaaaagaaggtccagttgttttgttccttcacggc |
46520663 |
T |
|
| Q |
121 |
ttcccagaactctggtattcatggcgccaccagaatgtagctctcagctccctcggctaccgtgctgttgctcccgatctccgtggctatggtgacaccg |
220 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| || ||||| |||||||||| ||||||||||||||||| ||||| |||||||| || ||||||| |
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|
| T |
46520662 |
ttccctgaactctggtattcatggcgccaccagattgctgctcttggctccctcggttaccgtgctgttgctccagatcttcgtggctacggcgacaccg |
46520563 |
T |
|
| Q |
221 |
atgctcc |
227 |
Q |
| |
|
||||||| |
|
|
| T |
46520562 |
atgctcc |
46520556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 30 - 228
Target Start/End: Complemental strand, 46490525 - 46490327
Alignment:
| Q |
30 |
aatagaacacagaagagtggaagtgaatggaatcaaaatgcatattgctgagaaaggaaaagaaggaccagttgtcttgttccttcatggcttcccagaa |
129 |
Q |
| |
|
|||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |||||| ||||||||||||||||||| ||| |
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|
| T |
46490525 |
aatagaacacagaacagtggaagtgaatggcatcaaaatgcatattgctgagaaaggtaaagaaggacccgttgtcctgttccttcatggcttccctgaa |
46490426 |
T |
|
| Q |
130 |
ctctggtattcatggcgccaccagaatgtagctctcagctccctcggctaccgtgctgttgctcccgatctccgtggctatggtgacaccgatgctccg |
228 |
Q |
| |
|
||||||||||||||||||||||||| | ||||| |||||||||| ||||| ||||||||||| ||||||||||| ||||| ||||||||||||||| |
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|
| T |
46490425 |
ctctggtattcatggcgccaccagatttctgctcttggctccctcggttaccgcgctgttgctccagatctccgtggttatggcgacaccgatgctccg |
46490327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 20 - 234
Target Start/End: Original strand, 46322730 - 46322944
Alignment:
| Q |
20 |
agatggaaggaatagaacacagaagagtggaagtgaatggaatcaaaatgcatattgctgagaaaggaaaagaaggaccagttgtcttgttccttcatgg |
119 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||| || |
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|
| T |
46322730 |
agatggaaggaatagagcacagaagagtggaagtgaatggaatcaaaatgcatattgctgagaaaggtaaagaaggacctgttgttttgttccttcacgg |
46322829 |
T |
|
| Q |
120 |
cttcccagaactctggtattcatggcgccaccagaatgtagctctcagctccctcggctaccgtgctgttgctcccgatctccgtggctatggtgacacc |
219 |
Q |
| |
|
||| || ||||||||||| || ||||||||||||| || |||||| |||| ||||||||||| || || ||||| ||||| ||||||||||||||||| |
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|
| T |
46322830 |
ctttcctgaactctggtactcttggcgccaccagattgcggctctcggctctctcggctaccgcgccgtagctccggatctacgtggctatggtgacact |
46322929 |
T |
|
| Q |
220 |
gatgctccgtcttca |
234 |
Q |
| |
|
|| ||||| |||||| |
|
|
| T |
46322930 |
gaggctccatcttca |
46322944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 20 - 212
Target Start/End: Complemental strand, 46494833 - 46494641
Alignment:
| Q |
20 |
agatggaaggaatagaacacagaagagtggaagtgaatggaatcaaaatgcatattgctgagaaaggaaaagaaggaccagttgtcttgttccttcatgg |
119 |
Q |
| |
|
|||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| |||||||||| || |
|
|
| T |
46494833 |
agatggaaggaatagagcacagaacagtggaagtgaatggaatcaaaatgcatattgctgaaaaaggaaaagaaggacctgttgtcctgttccttcacgg |
46494734 |
T |
|
| Q |
120 |
cttcccagaactctggtattcatggcgccaccagaatgtagctctcagctccctcggctaccgtgctgttgctcccgatctccgtggctatgg |
212 |
Q |
| |
|
||||| ||||||||||| || ||||||||||||| || |||||| |||| ||||| ||||| ||||| ||||||||||| ||||| ||||| |
|
|
| T |
46494733 |
attccctgaactctggtactcttggcgccaccagattgcggctctcggctctctcggttaccgggctgtggctcccgatcttcgtggttatgg |
46494641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 20 - 227
Target Start/End: Complemental strand, 46517122 - 46516915
Alignment:
| Q |
20 |
agatggaaggaatagaacacagaagagtggaagtgaatggaatcaaaatgcatattgctgagaaaggaaaagaaggaccagttgtcttgttccttcatgg |
119 |
Q |
| |
|
||||||||||| |||| ||||||| |||||||||||||||||||||||||||| | || ||||||||||||||||||||| | || |||||||||||||| |
|
|
| T |
46517122 |
agatggaaggagtagagcacagaacagtggaagtgaatggaatcaaaatgcatgtcgcagagaaaggaaaagaaggaccaatagtattgttccttcatgg |
46517023 |
T |
|
| Q |
120 |
cttcccagaactctggtattcatggcgccaccagaatgtagctctcagctccctcggctaccgtgctgttgctcccgatctccgtggctatggtgacacc |
219 |
Q |
| |
|
|| || ||| ||||||| |||||||||||||||| ||| |||||||||||||| |||||||| | || ||||| |||||| ||||||| |||||||| |
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|
| T |
46517022 |
ttttcctgaaatctggtactcatggcgccaccagattgttgctctcagctcccttggctaccgcaccgtggctccagatctctgtggctacggtgacact |
46516923 |
T |
|
| Q |
220 |
gatgctcc |
227 |
Q |
| |
|
|||||||| |
|
|
| T |
46516922 |
gatgctcc |
46516915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 139 - 234
Target Start/End: Original strand, 7475308 - 7475403
Alignment:
| Q |
139 |
tcatggcgccaccagaatgtagctctcagctccctcggctaccgtgctgttgctcccgatctccgtggctatggtgacaccgatgctccgtcttca |
234 |
Q |
| |
|
|||||||||||||||| | |||||||||||||||||||||||| || || ||| | ||||||||||||||||||||||||||| |||| |||||| |
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|
| T |
7475308 |
tcatggcgccaccagattatagctctcagctccctcggctaccatgtcgtggctactgatctccgtggctatggtgacaccgattctccatcttca |
7475403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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