View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9935_low_33 (Length: 251)
Name: NF9935_low_33
Description: NF9935
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9935_low_33 |
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Alignment Details
Target: chr8 (Bit Score: 242; Significance: 1e-134; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 1886944 - 1886699
Alignment:
| Q |
1 |
cgaagtggtatgattttcaccaaatgaatggttaagtcgaggctcttactcatctgttggtggggttaaaaacatcttaatcgtcttttttaaaactttg |
100 |
Q |
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| T |
1886944 |
cgaagtggtatgattttcaccaaatgaatggttaagtcgaggctcttactcatctgttggtggggttaaaaacatcttaatcgtcttttttaaaactttg |
1886845 |
T |
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| Q |
101 |
tgtttgacatgagaaaaattaagagagaaaaatcaatttctcataacgagggaggtagcatggctcccatccctcagacacaccctcagactcaagactg |
200 |
Q |
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| T |
1886844 |
tgtttgacatgagaaaaattaagagagaaaaatcaatttctcataacgagggaggtagcatggctcccatccctcagacacaccctcagactcaagactg |
1886745 |
T |
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| Q |
201 |
cgagaagtgttttggaggacctacctcatttccatcctttgcttct |
246 |
Q |
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| T |
1886744 |
cgagaagtgttttggaggacctacctcatttccatcctttgtttct |
1886699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 9 - 131
Target Start/End: Original strand, 1665632 - 1665753
Alignment:
| Q |
9 |
tatgattttcaccaa-atgaatggttaagtcgaggctcttactcatctgttggtggggttaaaaacatcttaatcgtcttttttaaaactttgtgtttga |
107 |
Q |
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| T |
1665632 |
tatgattttcaccaacatggatagttaagtcgaacctcttacttaaatgttggtggggttaaaaacatcttaatcgtcttctttaaaac--tgtgtttga |
1665729 |
T |
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| Q |
108 |
catgagaaaaattaagagagaaaa |
131 |
Q |
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| T |
1665730 |
catgagaaaaactaagaaagaaaa |
1665753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 130 - 175
Target Start/End: Original strand, 1665835 - 1665880
Alignment:
| Q |
130 |
aaatcaatttctcataacgagggaggtagcatggctcccatccctc |
175 |
Q |
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| T |
1665835 |
aaatcaatttctcataacaagggaggtagcatagcttccatccctc |
1665880 |
T |
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