View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9935_low_34 (Length: 251)
Name: NF9935_low_34
Description: NF9935
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9935_low_34 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 5 - 251
Target Start/End: Original strand, 3618409 - 3618655
Alignment:
| Q |
5 |
ggagaagcataggtgataaattgattccaacttgtgtaaagtggacccacttaacgcatgttccaactcagtggatgtttgtggnnnnnnnnccattcca |
104 |
Q |
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| T |
3618409 |
ggagaaccattggtgataaattgattccaacttgtgtaaagtggacccacttaacgcatgttccaactcagtggatgtttgtggttttttttccattcca |
3618508 |
T |
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| Q |
105 |
ttattatattataatttgtgggttcctacatttcactatagtgtgacactgtcactttaagtactggtttagagtttagtaagtactatacaatacaact |
204 |
Q |
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| T |
3618509 |
ttattatattataatttgtgggttcctacatttcactatagtgtgacactgtcactttaagtactggtttagagtttagtaagtactatacaatacaact |
3618608 |
T |
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| Q |
205 |
atgcatcttgtttggatttttccccctttcgttctttgtactatttt |
251 |
Q |
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| T |
3618609 |
atgcatcttgtttggatttttccccctttcgttctttgtactatttt |
3618655 |
T |
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