View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9935_low_36 (Length: 248)
Name: NF9935_low_36
Description: NF9935
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9935_low_36 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 223; Significance: 1e-123; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 19 - 248
Target Start/End: Complemental strand, 1887266 - 1887036
Alignment:
| Q |
19 |
gtgaacacggtgatggggacaaagagaatgaaagcgagcgaggg-ttgattttacgaggaccaaaaggtggagggattaaggagatagaaacggagaaga |
117 |
Q |
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| T |
1887266 |
gtgaacacggtgatggggacaaagagaatgaaagcgagcgaggggttgattttacgaggaccaaaaggtggagggattaaggagatagaaacggagaaga |
1887167 |
T |
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| Q |
118 |
tgaattgggaaaggaggaaaatgaggtgttggggataatggaaaagtagagaaggaagatgatagttgagggtattaattgccatatcaaaaagcttagg |
217 |
Q |
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| T |
1887166 |
tgaattgggaaaggaggaaaatgaggtgttggggataatggaaaagtagagaaggaagatgatagttgagggtattaattgccatatcaaaaagcttagg |
1887067 |
T |
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| Q |
218 |
aataatttgttccttaatctcacaacttctt |
248 |
Q |
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| T |
1887066 |
aataatttgttccttaatctcacaacttctt |
1887036 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 30 - 243
Target Start/End: Original strand, 1671364 - 1671594
Alignment:
| Q |
30 |
gatggggacaaagagaatgaaagcgagcgag-ggttgattttacgaggaccaaaaggtggagggattaaggagatagaaacggagaagatgaattgggaa |
128 |
Q |
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| T |
1671364 |
gatggggacaaagagaaggaaagcgagcgagaggttgattttacgaggaccaaaaggtgaagggattaaggagatagaaacggagaagatgaattgggaa |
1671463 |
T |
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| Q |
129 |
aggaggaaa----------------atgaggtgttggggataatggaaaagtagagaaggaagatgatagttgagggtattaattgccatatcaaaaagc |
212 |
Q |
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| T |
1671464 |
aagaggaaaaggggaaaagacgaaaatgaggtgttggggataatggaaaagtagagaaggaagatgagagttgagggtattaattgccatatcaaaaagg |
1671563 |
T |
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| Q |
213 |
ttaggaataatttgttccttaatctcacaac |
243 |
Q |
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| T |
1671564 |
ttaggaataatttgttccttaatctcacaac |
1671594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 140 - 248
Target Start/End: Original strand, 1665397 - 1665502
Alignment:
| Q |
140 |
gaggtgttggggataatggaaaagtagagaaggaagatgatagttgagggtattaattgccatatcaaaaagcttaggaataatttgttccttaatctca |
239 |
Q |
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| T |
1665397 |
gaggtgttggggagaatggaaaagtagagaaggaaaatgagagttgtgggtattgattgccatatcaaaaagcttacg---aatttgttccttaatctca |
1665493 |
T |
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| Q |
240 |
caacttctt |
248 |
Q |
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| T |
1665494 |
gaacttctt |
1665502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 165 - 220
Target Start/End: Complemental strand, 5995023 - 5994968
Alignment:
| Q |
165 |
agagaaggaagatgatagttgagggtattaattgccatatcaaaaagcttaggaat |
220 |
Q |
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| T |
5995023 |
agagaaagaagatgaaagatgagggtattgattgccatatcaaaaagctaaggaat |
5994968 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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