View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9935_low_39 (Length: 237)
Name: NF9935_low_39
Description: NF9935
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9935_low_39 |
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| [»] chr8 (4 HSPs) |
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| [»] chr7 (2 HSPs) |
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| [»] scaffold0391 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 220; Significance: 1e-121; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 18 - 237
Target Start/End: Complemental strand, 33992265 - 33992046
Alignment:
| Q |
18 |
gttattgtctgtgtcacttgcatttttcctggtaaatgagaagaggttaattaattacttaaagataaaaaatcatttgacaggatttatgtagagtatc |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33992265 |
gttattgtctgtgtcacttgcatttttcctggtaaatgagaagaggttaattaattacttaaagataaaaaatcatttgacaggatttatgtagagtatc |
33992166 |
T |
|
| Q |
118 |
attcatgtgagatatttaacaatttaagtagcctagaagaaaatataataataatagtcgtagtaccttggtattatgacattagccaaattcatgatgc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33992165 |
attcatgtgagatatttaacaatttaagtagcctagaagaaaatataataataatagtcgtagtaccttggtattatgacattagccaaattcatgatgc |
33992066 |
T |
|
| Q |
218 |
ctaatttgttgatgatttcc |
237 |
Q |
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|||||||||||||||||||| |
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| T |
33992065 |
ctaatttgttgatgatttcc |
33992046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 18 - 237
Target Start/End: Complemental strand, 33952746 - 33952526
Alignment:
| Q |
18 |
gttattgtctgtgtcacttgcatttttcctggtaaatgagaagaggttaattaattacttaaa-gataaaaaatcatttgacaggatttatgtagagtat |
116 |
Q |
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||||||||| |||||||||||||||||||||||||||||| |||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
33952746 |
gttattgtccgtgtcacttgcatttttcctggtaaatgagcagaggttaattagttacttaaaagataaaaaatcatttgacaggatttatgtagagtat |
33952647 |
T |
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| Q |
117 |
cattcatgtgagatatttaacaatttaagtagcctagaagaaaatataataataatagtcgtagtaccttggtattatgacattagccaaattcatgatg |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
33952646 |
cattcatgtgagatatttaacaatttaagtagcctagaagaaaatataataataatagtcatagtaccttggtattatgacattagccaaattcatgatg |
33952547 |
T |
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| Q |
217 |
cctaatttgttgatgatttcc |
237 |
Q |
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||||||||||||||||||||| |
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| T |
33952546 |
cctaatttgttgatgatttcc |
33952526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 18 - 237
Target Start/End: Complemental strand, 33975352 - 33975126
Alignment:
| Q |
18 |
gttattgtctgtgtcacttgcatttttcctggtaaatgagaagaggttaattaattacttaaa-gataaaaaatcatttgacaggatttatgtagagtat |
116 |
Q |
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||||||||| |||||||||||||||||||||||||||||| |||||||||||| ||||||||| |||||||||| ||||||||||||||||||||||||| |
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| T |
33975352 |
gttattgtccgtgtcacttgcatttttcctggtaaatgagcagaggttaattagttacttaaaagataaaaaattatttgacaggatttatgtagagtat |
33975253 |
T |
|
| Q |
117 |
cattcatgtgagatatttaacaatttaagtagcctagaagaaaatataataat------aatagtcgtagtaccttggtattatgacattagccaaattc |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
33975252 |
cattcatgtgagatatttaacaatttaagtagcctagaagaaaatataataataataataatagtcgtagtaccttggtattatgacattagccaaattc |
33975153 |
T |
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| Q |
211 |
atgatgcctaatttgttgatgatttcc |
237 |
Q |
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||||||||||||||||||||||||||| |
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| T |
33975152 |
atgatgcctaatttgttgatgatttcc |
33975126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 18 - 237
Target Start/End: Complemental strand, 33960052 - 33959826
Alignment:
| Q |
18 |
gttattgtctgtgtcacttgcatttttcctggtaaatgagaagaggttaattaattacttaaa-gataaaaaatcatttgacaggatttatgtagagtat |
116 |
Q |
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||||| ||| |||||||||||||||||||||||||||||| |||||||||||| ||||||||| |||||||||| ||||||||||||||||||||||||| |
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| T |
33960052 |
gttatcgtccgtgtcacttgcatttttcctggtaaatgagcagaggttaattagttacttaaaagataaaaaattatttgacaggatttatgtagagtat |
33959953 |
T |
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| Q |
117 |
cattcatgtgagatatttaacaatttaagtagcctagaagaaaatataataat------aatagtcgtagtaccttggtattatgacattagccaaattc |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
33959952 |
cattcatgtgagatatttaacaatttaagtagcctagaagaaaatataataataataataatagtcgtagtaccttggtattatgacattagccaaattc |
33959853 |
T |
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| Q |
211 |
atgatgcctaatttgttgatgatttcc |
237 |
Q |
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||||||||||||||||||||||||||| |
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| T |
33959852 |
atgatgcctaatttgttgatgatttcc |
33959826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 152; Significance: 1e-80; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 18 - 237
Target Start/End: Original strand, 8278010 - 8278229
Alignment:
| Q |
18 |
gttattgtctgtgtcacttgcatttttcctggtaaatgagaagaggttaattaattacttaaagataaaaaatcatttgacaggatttatgtagagtatc |
117 |
Q |
| |
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||||||||| ||||||||| || |||| | |||||||||| |||||||||||| |||||||||||||| |||| |||| ||||||||||||||||||||| |
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| T |
8278010 |
gttattgtccgtgtcactttcactttttcaggtaaatgagcagaggttaattagttacttaaagataagaaattatttcacaggatttatgtagagtatc |
8278109 |
T |
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| Q |
118 |
attcatgtgagatatttaacaatttaagtagcctagaagaaaatataataataatagtcgtagtaccttggtattatgacattagccaaattcatgatgc |
217 |
Q |
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||||||||||||||||||||||||| | ||||| ||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| || |
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| T |
8278110 |
attcatgtgagatatttaacaattttattagccaagaagaaaatataataataatagtcctagtaccttggtattatcacattagccaaattcatgaggc |
8278209 |
T |
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| Q |
218 |
ctaatttgttgatgatttcc |
237 |
Q |
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||||||| |||||||||||| |
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| T |
8278210 |
ctaatttattgatgatttcc |
8278229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 71
Target Start/End: Original strand, 2891566 - 2891616
Alignment:
| Q |
21 |
attgtctgtgtcacttgcatttttcctggtaaatgagaagaggttaattaa |
71 |
Q |
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||||| |||||||||||||||||| |||||||||||| | ||| ||||||| |
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| T |
2891566 |
attgtatgtgtcacttgcattttttctggtaaatgagcaaagggtaattaa |
2891616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0391 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: scaffold0391
Description:
Target: scaffold0391; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 180 - 237
Target Start/End: Complemental strand, 12174 - 12117
Alignment:
| Q |
180 |
gtaccttggtattatgacattagccaaattcatgatgcctaatttgttgatgatttcc |
237 |
Q |
| |
|
|||||||| ||||||||||||||||| ||||||| |||||||||||| ||||||||| |
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| T |
12174 |
gtaccttgctattatgacattagccagattcatggagcctaatttgtttatgatttcc |
12117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0391; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 69
Target Start/End: Complemental strand, 12294 - 12246
Alignment:
| Q |
21 |
attgtctgtgtcacttgcatttttcctggtaaatgagaagaggttaatt |
69 |
Q |
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|||||||| ||||||||||||||||| ||| ||||| ||||||||||| |
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| T |
12294 |
attgtctgcatcacttgcatttttcctagtatatgagcagaggttaatt |
12246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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