View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9935_low_40 (Length: 229)
Name: NF9935_low_40
Description: NF9935
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9935_low_40 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 7 - 229
Target Start/End: Original strand, 47323752 - 47323974
Alignment:
| Q |
7 |
attagaatcctttgttataataacattggaagnnnnnnnnttgttgagttaccaaaagttgtgaaaacactttgtaacctctcaagatcttgtgatgatt |
106 |
Q |
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| T |
47323752 |
attagaatcctttgttataataacattggaagaaaaaaaattgttgagttaccaaaagttgtgaaaacactttgtaacctctcaagatcttgtgatgatt |
47323851 |
T |
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| Q |
107 |
ggcaataccttggtatagattgtcttttattgcttctcaaggatgaaaatacaaggtacaaagttattattgatgatattgatgttgtttcatgtcttgt |
206 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
47323852 |
ggcaataccttggtatagattgtcttttattgcttctcaaggatgaaaatacaaggtacaaagttattattgatgatgttgatgttgtttcatgtcttgt |
47323951 |
T |
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| Q |
207 |
tgatttgattgaacttagaaaac |
229 |
Q |
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| T |
47323952 |
tgatttgattgaacttagaaaac |
47323974 |
T |
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