View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9935_low_43 (Length: 205)
Name: NF9935_low_43
Description: NF9935
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9935_low_43 |
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| [»] chr3 (2 HSPs) |
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| [»] chr5 (1 HSPs) |
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| [»] scaffold0042 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 89; Significance: 4e-43; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 101 - 205
Target Start/End: Original strand, 26373181 - 26373284
Alignment:
| Q |
101 |
actagggggacattaaacctgacctagttacaaccaaagcggaaatacatcgtgaaaatacaaactgggttgaccatccctaatcaatcttaacaaagta |
200 |
Q |
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| T |
26373181 |
actagggggacattaaacctgacctagttacaaccaaagcggaaatacattgtgaaaatacaaaccgggttgaccat-cctaatcaatcttaacaaagta |
26373279 |
T |
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| Q |
201 |
aacac |
205 |
Q |
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||||| |
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| T |
26373280 |
aacac |
26373284 |
T |
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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 26373087 - 26373123
Alignment:
| Q |
1 |
taaataacttaaatatgcatattttggatgcttcttc |
37 |
Q |
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| T |
26373087 |
taaataacttaaatatgcatattttggatgcttcttc |
26373123 |
T |
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Target: chr5 (Bit Score: 71; Significance: 2e-32; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 104 - 205
Target Start/End: Complemental strand, 4157871 - 4157769
Alignment:
| Q |
104 |
agggggacattaaacctgacc-tagttacaaccaaagcggaaatacatcgtgaaaatacaaactgggttgaccatccctaatcaatcttaacaaagtaaa |
202 |
Q |
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| T |
4157871 |
aggggaacattaaacctgaccctagttacaaccaaagcggaaatacatcgtgaaaatacaaatcgggtttaccagccctaatcaatattaacaaagtaaa |
4157772 |
T |
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| Q |
203 |
cac |
205 |
Q |
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||| |
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| T |
4157771 |
cac |
4157769 |
T |
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Target: scaffold0042 (Bit Score: 63; Significance: 1e-27; HSPs: 1)
Name: scaffold0042
Description:
Target: scaffold0042; HSP #1
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 135 - 205
Target Start/End: Complemental strand, 31394 - 31324
Alignment:
| Q |
135 |
caaagcggaaatacatcgtgaaaatacaaactgggttgaccatccctaatcaatcttaacaaagtaaacac |
205 |
Q |
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| T |
31394 |
caaagcggaaatacttcgtgaaaatacaaactgggttgaccagccctaatcaatcttaacaaagtaaacac |
31324 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 108 - 205
Target Start/End: Complemental strand, 44742473 - 44742376
Alignment:
| Q |
108 |
ggacattaaacctgacctagttacaaccaaagcggaaatacatcgtgaaaatacaaactgggttgaccatccctaatcaatcttaacaaagtaaacac |
205 |
Q |
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|||||||||| ||| |||| |||||||||| || ||||||||||||| |||||||||| | |||| || || | ||||||| ||||||| ||||||| |
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| T |
44742473 |
ggacattaaagttgatctaggtacaaccaaaacgaaaatacatcgtgataatacaaacttgattgatcagccttgatcaatcctaacaaaataaacac |
44742376 |
T |
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