View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9935_low_44 (Length: 201)
Name: NF9935_low_44
Description: NF9935
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9935_low_44 |
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Alignment Details
Target: chr3 (Bit Score: 137; Significance: 9e-72; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 137; E-Value: 9e-72
Query Start/End: Original strand, 24 - 184
Target Start/End: Complemental strand, 22435363 - 22435203
Alignment:
| Q |
24 |
gcttgaacgtgttaaactctttggatatttaaataagtttcctgagtggatctcaaaactccaaaatcttgttaagctggatttgccacgtttgaaggaa |
123 |
Q |
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| T |
22435363 |
gcttgaacgtgttaaactctttggatattcaaataagtttcctgagtggatttcaaaactccaaaatcttgttaagctggatttgccacgtttgaaggaa |
22435264 |
T |
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| Q |
124 |
gtgaatgatgcaatgaaattactccaacttatgccaaacttgctgtccctccatatctctg |
184 |
Q |
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||||||||||||||||||||||| ||| ||||||||||||| |||||||||||||||||| |
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| T |
22435263 |
gtgaatgatgcaatgaaattacttcaaagtatgccaaacttgttgtccctccatatctctg |
22435203 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 52 - 174
Target Start/End: Complemental strand, 22356679 - 22356557
Alignment:
| Q |
52 |
ttaaataagtttcctgagtggatctcaaaactccaaaatcttgttaagctggatttgccacgtttgaaggaagtgaatgatgcaatgaaattactccaac |
151 |
Q |
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||||||||||| ||||||||||| |||||||||||||||||||| |||||| || | | | || ||||||||||||||||||||||||||||||| |
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| T |
22356679 |
ttaaataagttgcctgagtggatttcaaaactccaaaatcttgtcaagctgaatgtaagccttacgagggaagtgaatgatgcaatgaaattactccaaa |
22356580 |
T |
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| Q |
152 |
ttatgccaaacttgctgtccctc |
174 |
Q |
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||||||||| ||| |||||||| |
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| T |
22356579 |
gtatgccaaatttgttgtccctc |
22356557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 24 - 174
Target Start/End: Complemental strand, 22629175 - 22629025
Alignment:
| Q |
24 |
gcttgaacgtgttaaactctttggatatttaaataagtttcctgagtggatctcaaaactccaaaatcttgttaagctggatttgccacgtttgaaggaa |
123 |
Q |
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|||| ||||||||||||||| ||||||||| || || || ||||||||||| ||||||||||| ||||||||||||||| || | | |||| || |
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| T |
22629175 |
gcttcaacgtgttaaactctatggatattttaagaaattacctgagtggatttcaaaactccagaatcttgttaagctgagagtgatgcttacgaagcaa |
22629076 |
T |
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| Q |
124 |
gtgaatgatgcaatgaaattactccaacttatgccaaacttgctgtccctc |
174 |
Q |
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| T |
22629075 |
gggaatgatgcaatgaaattactccaaagtatgcgaaaattgctgtccctc |
22629025 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 119 - 184
Target Start/End: Complemental strand, 22366558 - 22366493
Alignment:
| Q |
119 |
aggaagtgaatgatgcaatgaaattactccaacttatgccaaacttgctgtccctccatatctctg |
184 |
Q |
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|||||| ||| ||||||||||||||||||||| ||||||||||||| |||||||||||||||||| |
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| T |
22366558 |
aggaagggaacgatgcaatgaaattactccaaagtatgccaaacttgttgtccctccatatctctg |
22366493 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 58 - 165
Target Start/End: Complemental strand, 22466655 - 22466548
Alignment:
| Q |
58 |
aagtttcctgagtggatctcaaaactccaaaatcttgttaagctggatttgccacgtttgaaggaagtgaatgatgcaatgaaattactccaacttatgc |
157 |
Q |
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||||| ||||||||||| ||||||||| ||||||||||| |||| | || || | |||||||| ||||||||||||||||||||||||| ||||| |
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| T |
22466655 |
aagttacctgagtggatttcaaaactcaaaaatcttgttgagctcaaggtgacagttaggaaggaagggaatgatgcaatgaaattactccaaagtatgc |
22466556 |
T |
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| Q |
158 |
caaacttg |
165 |
Q |
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|||||||| |
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| T |
22466555 |
caaacttg |
22466548 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 58 - 174
Target Start/End: Complemental strand, 22352535 - 22352419
Alignment:
| Q |
58 |
aagtttcctgagtggatctcaaaactccaaaatcttgttaagctggatttgccacgtttgaaggaagtgaatgatgcaatgaaattactccaacttatgc |
157 |
Q |
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||||| ||||||||||| ||||||||||| ||||||||||||||| | || | | |||| || ||||||||||||||||||||||||| ||||| |
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| T |
22352535 |
aagttgcctgagtggatttcaaaactccagaatcttgttaagctgaaagtgaatcttccgaagccagagaatgatgcaatgaaattactccaaagtatgc |
22352436 |
T |
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| Q |
158 |
caaacttgctgtccctc |
174 |
Q |
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|||| ||| |||||||| |
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| T |
22352435 |
caaatttgttgtccctc |
22352419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 23 - 173
Target Start/End: Complemental strand, 22634191 - 22634041
Alignment:
| Q |
23 |
agcttgaacgtgttaaactctttggatatttaaataagtttcctgagtggatctcaaaactccaaaatcttgttaagctggatttgccacgtttgaagga |
122 |
Q |
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||||| ||||||||||||| | || |||||| || || ||||||||||| |||||||||||| |||| |||||| || | || | | |||||| |
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| T |
22634191 |
agcttcaacgtgttaaacttatagggtatttattgaaattgcctgagtggatttcaaaactccaatatctcgttaagttgaaggtgacgattacgaagga |
22634092 |
T |
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| Q |
123 |
agtgaatgatgcaatgaaattactccaacttatgccaaacttgctgtccct |
173 |
Q |
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|| |||||||||||||||||||||| || ||||||||||||| ||||||| |
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| T |
22634091 |
agggaatgatgcaatgaaattactcaaaagtatgccaaacttgttgtccct |
22634041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 127 - 182
Target Start/End: Complemental strand, 22441371 - 22441316
Alignment:
| Q |
127 |
aatgatgcaatgaaattactccaacttatgccaaacttgctgtccctccatatctc |
182 |
Q |
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||||||||||||||||||||| | ||||||||||||| |||||||||||||||| |
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| T |
22441371 |
aatgatgcaatgaaattactcataagtatgccaaacttgttgtccctccatatctc |
22441316 |
T |
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