View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9935_low_6 (Length: 508)
Name: NF9935_low_6
Description: NF9935
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9935_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 317; Significance: 1e-178; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 317; E-Value: 1e-178
Query Start/End: Original strand, 89 - 496
Target Start/End: Complemental strand, 11346461 - 11346054
Alignment:
| Q |
89 |
catgaatatttctaacatattaaagcaaaacattatcagagtataaacaatgtatcatagacaacacataagtttcagaggcataatgtaaacaacaata |
188 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11346461 |
catgaatatttctaacatattaaagcaaaacattatcagagtataaacaatgtatcatagacaacacataagtttcagaggcataatgtaaacaacaata |
11346362 |
T |
|
| Q |
189 |
aataaacacaaggtgtgcattctaannnnnnnnnnnnnnnnnctgctgcatcatcttaagaaaagaggcaatctcagacttaatctcttcgaattgttgc |
288 |
Q |
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||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
11346361 |
aataaacacaaggtgtgcattctaaggttgttgttcttgttgttgctgcgtcatcttaagaaaagaggcaatctcagacttaatctcttcaaattgttgc |
11346262 |
T |
|
| Q |
289 |
ttcacagtcatttccagatcctctgtctttttaatctgagcttcttgaattgctttctgttgcttatgttcttccttgacttcagcaagttgtctcctca |
388 |
Q |
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|||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
11346261 |
ttcacaatcatttccagatcctttgtctttttaatctgagcttcttgaattgctttctgttgcttctgttcttccttgacttcagcaagttgtctcctca |
11346162 |
T |
|
| Q |
389 |
aagcttaagataccatattttgctcaaacaaatcttcctgaagtttctcaacaaactttacttcttcaaggtctttcatatacaaagctttcataattgg |
488 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| || ||| |
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| T |
11346161 |
aagcttaagataccatattttgctcaaacaaatcttcctgaagtttctcaacaaactttacttcttcagggtctttcatattcaaagctttcagaactgg |
11346062 |
T |
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| Q |
489 |
tttctctg |
496 |
Q |
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| T |
11346061 |
tttctctg |
11346054 |
T |
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