View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9935_low_9 (Length: 463)
Name: NF9935_low_9
Description: NF9935
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9935_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 405; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 14 - 446
Target Start/End: Complemental strand, 31791617 - 31791185
Alignment:
| Q |
14 |
agagcgtggtgagccagggaggtaaccaaaatatgtgattattctgctatttgattttaaatattccgattatgtaacaaaacaggttgtctcccctgcc |
113 |
Q |
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| T |
31791617 |
agagcgtggtgagccagggaggtaaccaaaatatgtgattattctgctatttgattttaaatattctgattatgtaacaaaacaggctgtctcccctgcc |
31791518 |
T |
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| Q |
114 |
ataaaaaattactctggtcttcaaggtccaaattattgttcatttaagtgtcctcgtgttctatcttcccgaacatgaatgaccaatataatggctaata |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31791517 |
ataaaaaattactctggtcttcaaggtccaaattattgttcatttaagtgtcctcgtgttctatcttcccgaacatgaatgaccaatataatggctaatg |
31791418 |
T |
|
| Q |
214 |
taatgactactaacttgtaaaagtcaacattaaagaagcaaaatatcatctataacgatctatgcaagcaaaagtaacattgatatggcatattaacgac |
313 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31791417 |
taatgactactaacttgtaaaagtcaacattaaaaaagcaaaatatcatctataacgatctatgcaagcaaaagtaacattgatatggcatattaacgac |
31791318 |
T |
|
| Q |
314 |
tttaagtcaaagaactgtgaaataaaaaactatcataatatcctttaactttctagacaaaatgtctagggtactttagggctagctggcacagcccata |
413 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| |
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| T |
31791317 |
tttaagtgaaagaactgtgaaataaaaaactatcataatatcctttaactttctagacaaaatgtctagggtacttcagtgctagctggcacagcccata |
31791218 |
T |
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| Q |
414 |
gggttctgcatcttctaccatagatgcatgatt |
446 |
Q |
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| T |
31791217 |
gggttctgcatcttctaccatagatgcatgatt |
31791185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 218 - 306
Target Start/End: Complemental strand, 31799975 - 31799890
Alignment:
| Q |
218 |
gactactaacttgtaaaagtcaacattaaagaagcaaaatatcatctataacgatctatgcaagcaaaagtaacattgatatggcatat |
306 |
Q |
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||||||||| ||||||||||| |||||||| || ||| || |||||||| ||||||||||||||||||||||| | ||||||||||| |
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| T |
31799975 |
gactactaatttgtaaaagtctacattaaa--agttaaaaat-atctataatgatctatgcaagcaaaagtaacactaatatggcatat |
31799890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 36 - 147
Target Start/End: Complemental strand, 31800137 - 31800029
Alignment:
| Q |
36 |
taaccaaaatatgtgattattctgctatttgattttaaatattccgattatgtaacaaaacaggttgtctcccctgccataaaaaattactctggtcttc |
135 |
Q |
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||||||||||| | ||||||| | |||||| || |||| |||| |||||||||||| ||||||||||| ||||||| ||||| | ||||||||||| |
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| T |
31800137 |
taaccaaaatacgggattattaggatatttggttctaaacattctaattatgtaacaacacaggttgtct---ctgccatgaaaaactgctctggtcttc |
31800041 |
T |
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| Q |
136 |
aaggtccaaatt |
147 |
Q |
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| T |
31800040 |
caggtccaaatt |
31800029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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