View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9936_high_12 (Length: 390)
Name: NF9936_high_12
Description: NF9936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9936_high_12 |
 | |
|
| [»] chr8 (1 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 18 - 390
Target Start/End: Complemental strand, 26796129 - 26795770
Alignment:
| Q |
18 |
acaggtaggttgattaatcataatgttcatgtatgtatctatgtattaattaattaatgtgtatctaaacttgtcattgtatcataaaatatatactaaa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| ||||||||||||||||| || |
|
|
| T |
26796129 |
acaggtaggttgattaatcataatgttcatgtatgtatgtatgtattaattaat----gtgtatctaaacttgtcatcgtatcataaaatatata---aa |
26796037 |
T |
|
| Q |
118 |
atgcaggagcagaagcactatttgctgatgttggacatttcacagtgcggtctatacagataagcacgtgcggtcttgtttaccctgctctcatacttgc |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26796036 |
atgcaggagcagaagcactatttgctgatgttggacatttcacagtgcggtctatacagataagcacgtgcggtcttgtttaccctgctctcatacttgc |
26795937 |
T |
|
| Q |
218 |
ctacactggacaatcctcttatcttcgcaaacacaatgacgctgctactgatgctttctataagtccgtaccacgtaatgcattttatcacatcattaac |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26795936 |
ctacactggacaatcctcttatcttcgcaaacacaatgacgctgctactgatgctttctataagtccgtaccacgtaatgcattttatcacatcattaac |
26795837 |
T |
|
| Q |
318 |
atcgatgcnnnnnnnnnnnnngtagcaacgacactttagattaatgacttgtttggtgttttaaaattattat |
390 |
Q |
| |
|
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26795836 |
atcgatgc------tatatatgtagcaacaacactttagattaatgacttgtttggtgttttaaaattattat |
26795770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 119 - 181
Target Start/End: Complemental strand, 44179816 - 44179754
Alignment:
| Q |
119 |
tgcaggagcagaagcactatttgctgatgttggacatttcacagtgcggtctatacagataag |
181 |
Q |
| |
|
||||||| | |||||||||||||||||||||||||| || || || ||||||||||||||||| |
|
|
| T |
44179816 |
tgcaggaactgaagcactatttgctgatgttggacactttacggttcggtctatacagataag |
44179754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University