View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9936_high_17 (Length: 364)
Name: NF9936_high_17
Description: NF9936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9936_high_17 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 338; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 7 - 364
Target Start/End: Complemental strand, 38312655 - 38312298
Alignment:
| Q |
7 |
tttggtgttagcattagttgtatttaactaaactctctacaatttcaagtttcaacaatattgatgttattgcgatatgaaacattgactctgttataat |
106 |
Q |
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| T |
38312655 |
tttggtgttagcattagttgtatttaactaaactctctacaatttcaagtttcaacaatattgatgttattgcgatatgaaacattgactctgttataat |
38312556 |
T |
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| Q |
107 |
agtaaatagatgcttaacaatgagtgtaaaaagtgttacctatggcagctgtagaagtaagagtagcgatacaatcatgtgaaattgaatggacattcgc |
206 |
Q |
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| T |
38312555 |
agtaaatagatgcttaacaatgagtgtaaaaagtgttacctatggcagctgtagaagtaagagtagcgatacaatcatgtgaaattgaatggacattcgc |
38312456 |
T |
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| Q |
207 |
agctgagctaaccacagaagcaaggttgtcgcgcttagctcacattgcttcggcagcctcaacacactgcaccgtaactaatatggcagccgaagcaata |
306 |
Q |
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| T |
38312455 |
agctgagctaaccacagaagcaaggttgtaacacttagctcacattgctttggcagcctcaacacactgcaccgtaactaatatggcagccgaagcaata |
38312356 |
T |
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| Q |
307 |
tccatgtttgtcttgtctatcttttcatccttgattggtgttgacgaggctgatgttg |
364 |
Q |
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| T |
38312355 |
tccatgtttgtcttgtctatcttttcatccttgattggtgttgacgaggctgctgttg |
38312298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 78 - 350
Target Start/End: Complemental strand, 38268805 - 38268539
Alignment:
| Q |
78 |
gcgatatgaaacattgactctgttataatagtaaatagatgcttaacaatgagtgtaaaaagtgttacctatggcagctgtagaagtaagagtagcgata |
177 |
Q |
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| T |
38268805 |
gcgatatgaaacattgactaaattatattatgaaatagatgctcaatgatgtgggctaaaagtcttacctgtggcagctgcagcagtaagagtagtgata |
38268706 |
T |
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| Q |
178 |
caatcatgtgaaattgaatggacattcgcagctgagctaaccacagaagcaaggttgtcgcgcttagctcacattgcttcggcagcctcaacacactgca |
277 |
Q |
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|||||| ||| | |||||| |||||||||| ||||| || ||||||| |||||||| ||||| |||||||||||||||||| ||||| || |
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| T |
38268705 |
tcatcatgagaac------gaacattcacagctgagctgaccaccgatgcaaggtggtcgcgctcagctcccattgcttcggcagcctccacacattgtg |
38268612 |
T |
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| Q |
278 |
ccgtaactaatatggcagccgaagcaatatccatgtttgtcttgtctatcttttcatccttgattggtgttga |
350 |
Q |
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| T |
38268611 |
cggcaactagagtggcagccgaagcaacagccacgtctgtcttggccatcttctcatccttgttttgtgttga |
38268539 |
T |
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