View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9936_high_23 (Length: 274)
Name: NF9936_high_23
Description: NF9936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9936_high_23 |
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Alignment Details
Target: chr8 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 18 - 262
Target Start/End: Original strand, 32701315 - 32701558
Alignment:
| Q |
18 |
ttgaattttttcttgtaaacttttcatagcttcctcgagagatttcctttgagaaaactaattatcaatgttcattaaaagaagaaaaatgtaaaccaaa |
117 |
Q |
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| T |
32701315 |
ttgaattttttcttgtaaacttttcatagcttcctcgagagatttcctttgggaaaactaattatcaatgttcattaaaagaagaaaaatgtaaaccaaa |
32701414 |
T |
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| Q |
118 |
atatcgaactgcaaatatagtttaacagcatctacactattcctaaacccagcacaaatttggctaaaagccaatagttagctatcaggaagcaatctta |
217 |
Q |
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| T |
32701415 |
-tatcgaactacaaatatagtttaacagcatctacactattcctgaacacagcacaaatttggctaaaagccaatagttagctatcaggaagcaatctta |
32701513 |
T |
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| Q |
218 |
acatgttttctcaaagagcccggtgcacaaaattcccgcgttctc |
262 |
Q |
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| T |
32701514 |
acatgttttctcaaagagcccggtgcacaaagttcccgcgttctc |
32701558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 18 - 89
Target Start/End: Original strand, 3957268 - 3957339
Alignment:
| Q |
18 |
ttgaattttttcttgtaaacttttcatagcttcctcgagagatttcctttgagaaaactaattatcaatgtt |
89 |
Q |
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| T |
3957268 |
ttgaattttttcttgtaaacttttcatggcttcctcaagagatttccgttgggagtcctaattatcaatgtt |
3957339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 167 - 236
Target Start/End: Original strand, 3957400 - 3957469
Alignment:
| Q |
167 |
cagcacaaatttggctaaaagccaatagttagctatcaggaagcaatcttaacatgttttctcaaagagc |
236 |
Q |
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| T |
3957400 |
cagcacaaatttggctaaaagccaacaggtagctttaatgaagaaatcttaacatgctttctaaaagagc |
3957469 |
T |
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