View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9936_high_29 (Length: 239)

Name: NF9936_high_29
Description: NF9936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9936_high_29
NF9936_high_29
[»] chr5 (2 HSPs)
chr5 (55-221)||(1538097-1538263)
chr5 (11-53)||(39949091-39949133)
[»] chr8 (3 HSPs)
chr8 (11-53)||(41741096-41741138)
chr8 (106-151)||(12655918-12655963)
chr8 (109-169)||(14228706-14228766)
[»] chr7 (4 HSPs)
chr7 (11-53)||(12642601-12642643)
chr7 (11-53)||(42709226-42709268)
chr7 (11-49)||(43702641-43702679)
chr7 (113-169)||(29763833-29763889)
[»] chr3 (1 HSPs)
chr3 (11-53)||(33516698-33516740)
[»] chr1 (4 HSPs)
chr1 (11-53)||(43669651-43669693)
chr1 (11-53)||(46900151-46900193)
chr1 (108-169)||(16234306-16234367)
chr1 (108-169)||(29706714-29706776)
[»] chr2 (2 HSPs)
chr2 (107-169)||(4114433-4114495)
chr2 (107-169)||(18508075-18508137)
[»] chr6 (1 HSPs)
chr6 (101-169)||(16368058-16368127)


Alignment Details
Target: chr5 (Bit Score: 139; Significance: 7e-73; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 55 - 221
Target Start/End: Complemental strand, 1538263 - 1538097
Alignment:
Q  55 ataataaagttgtgtataagaaaataaatagcagaatagttattaattaatttaagaaaaatgatatttgttgaacaattttataataacttttgtataa 154  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||    
T  1538263 ataataaagttgtgtataagaaaataaatagaagaatagttattaattaatttaagaaaaatgatatttgttgaacaattttatgataacttttgtacaa 1538164  T
Q  155 ccttctttctcataccaagagttattgtgttataaacatccttgttgctcatactttattgtatgac 221  Q
    |||||||||| |||| ||| ||||||||||||||||||| |||||||||||||||||||||||||||    
T  1538163 ccttctttctaatactaagggttattgtgttataaacatacttgttgctcatactttattgtatgac 1538097  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 11 - 53
Target Start/End: Original strand, 39949091 - 39949133
Alignment:
Q  11 agcagagagtgcaggagagaaagtgctgcagatgatccaattt 53  Q
    ||||| ||||||||||||||||||||||||| |||||||||||    
T  39949091 agcagggagtgcaggagagaaagtgctgcaggtgatccaattt 39949133  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 11 - 53
Target Start/End: Original strand, 41741096 - 41741138
Alignment:
Q  11 agcagagagtgcaggagagaaagtgctgcagatgatccaattt 53  Q
    ||||| |||||||||||||||||||||||||||||||||||||    
T  41741096 agcagggagtgcaggagagaaagtgctgcagatgatccaattt 41741138  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 106 - 151
Target Start/End: Original strand, 12655918 - 12655963
Alignment:
Q  106 ttaagaaaaatgatatttgttgaacaattttataataacttttgta 151  Q
    |||||| |||||||||||||  ||| ||||||||||||||||||||    
T  12655918 ttaagagaaatgatatttgtacaaccattttataataacttttgta 12655963  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 169
Target Start/End: Original strand, 14228706 - 14228766
Alignment:
Q  109 agaaaaatgatatttgttgaacaattttataataacttttgtataaccttctttctcatac 169  Q
    |||||||||||||||||  ||| ||||| | |||||||||||| ||| |||| ||||||||    
T  14228706 agaaaaatgatatttgtacaactattttgtgataacttttgtacaactttctctctcatac 14228766  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 11 - 53
Target Start/End: Original strand, 12642601 - 12642643
Alignment:
Q  11 agcagagagtgcaggagagaaagtgctgcagatgatccaattt 53  Q
    ||||| |||||||||||||||||||||||||||||||||||||    
T  12642601 agcagggagtgcaggagagaaagtgctgcagatgatccaattt 12642643  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 11 - 53
Target Start/End: Complemental strand, 42709268 - 42709226
Alignment:
Q  11 agcagagagtgcaggagagaaagtgctgcagatgatccaattt 53  Q
    ||||| |||||||||||||||||||||||||||||||||||||    
T  42709268 agcagggagtgcaggagagaaagtgctgcagatgatccaattt 42709226  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 49
Target Start/End: Original strand, 43702641 - 43702679
Alignment:
Q  11 agcagagagtgcaggagagaaagtgctgcagatgatcca 49  Q
    ||||| |||||||||||||||| ||||||||||||||||    
T  43702641 agcagggagtgcaggagagaaaatgctgcagatgatcca 43702679  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 169
Target Start/End: Original strand, 29763833 - 29763889
Alignment:
Q  113 aaatgatatttgttgaacaattttataataacttttgtataaccttctttctcatac 169  Q
    |||||||||||||  ||| ||||| | |||||||||||| ||| |||||||||||||    
T  29763833 aaatgatatttgtacaaccattttgtgataacttttgtacaactttctttctcatac 29763889  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 11 - 53
Target Start/End: Complemental strand, 33516740 - 33516698
Alignment:
Q  11 agcagagagtgcaggagagaaagtgctgcagatgatccaattt 53  Q
    ||||| |||||||||||||||||||||||||||||||||||||    
T  33516740 agcagggagtgcaggagagaaagtgctgcagatgatccaattt 33516698  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 11 - 53
Target Start/End: Complemental strand, 43669693 - 43669651
Alignment:
Q  11 agcagagagtgcaggagagaaagtgctgcagatgatccaattt 53  Q
    ||||| |||||||||||||||||||||||||||||||||||||    
T  43669693 agcagggagtgcaggagagaaagtgctgcagatgatccaattt 43669651  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 11 - 53
Target Start/End: Complemental strand, 46900193 - 46900151
Alignment:
Q  11 agcagagagtgcaggagagaaagtgctgcagatgatccaattt 53  Q
    ||||| |||||||||||||||||||||||||||||||||||||    
T  46900193 agcagggagtgcaggagagaaagtgctgcagatgatccaattt 46900151  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 108 - 169
Target Start/End: Complemental strand, 16234367 - 16234306
Alignment:
Q  108 aagaaaaatgatatttgttgaacaattttataataacttttgtataaccttctttctcatac 169  Q
    ||||||||||||||||||  | | ||||||| | ||||||||||||||||||| ||||||||    
T  16234367 aagaaaaatgatatttgtacatccattttatgacaacttttgtataaccttctctctcatac 16234306  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 169
Target Start/End: Complemental strand, 29706776 - 29706714
Alignment:
Q  108 aagaaaaatgatatttgttgaacaattttataataacttttg-tataaccttctttctcatac 169  Q
    |||| |||||||||||||  ||| ||||||| |||||||||| ||||||||||| ||||||||    
T  29706776 aagagaaatgatatttgtacaaccattttatgataacttttgttataaccttctctctcatac 29706714  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 107 - 169
Target Start/End: Complemental strand, 4114495 - 4114433
Alignment:
Q  107 taagaaaaatgatatttgttgaacaattttataataacttttgtataaccttctttctcatac 169  Q
    ||||| |||| ||||||||  ||| ||||||| |||||||||||||||| |||| ||||||||    
T  4114495 taagagaaattatatttgtacaaccattttattataacttttgtataactttctctctcatac 4114433  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 107 - 169
Target Start/End: Original strand, 18508075 - 18508137
Alignment:
Q  107 taagaaaaatgatatttgttgaacaattttataataacttttgtataaccttctttctcatac 169  Q
    ||||| |||||||||||||  | | ||||||| |||||||||||||||| |||| ||||||||    
T  18508075 taagagaaatgatatttgtacatccattttatgataacttttgtataacattctctctcatac 18508137  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 101 - 169
Target Start/End: Complemental strand, 16368127 - 16368058
Alignment:
Q  101 ttaatttaagaaaaatgatatttgttgaacaattttataataacttttgt-ataaccttctttctcatac 169  Q
    |||| |||||| |||||||||||||  ||| |||||||||||| |||||| | ||| |||||||||||||    
T  16368127 ttaaattaagagaaatgatatttgtacaaccattttataataatttttgtaacaactttctttctcatac 16368058  T

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