View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9936_high_4 (Length: 581)
Name: NF9936_high_4
Description: NF9936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9936_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 376; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 158 - 573
Target Start/End: Complemental strand, 4480747 - 4480333
Alignment:
| Q |
158 |
atttgaaaaatgttaagcaatcttggttagattcttttgaatgagtgaatttgaatacttactaattttcctatgtttgaatagtcattagtatatatct |
257 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
4480747 |
atttgaaaaatgttaagcaatcttggttagattcttttgaatgagtgaatttgaatacttactaattttcctatggttgaatagtcattagtatatatct |
4480648 |
T |
|
| Q |
258 |
tgttaaattcaacaaatatcattgtataatgttgcattgattcaaatgccagacaagttatttgtgaattttagtattactatatcagatatataaaaca |
357 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
4480647 |
tgttaaattcaacaaatatcattgtataatgttgcattcattcaaatgccagacatgttatttgtgaattttagtattactatattggatatataaaaca |
4480548 |
T |
|
| Q |
358 |
aagataatttaatttgacacagatgttccagaaaggttctcctctcgtgaaagatgtatcgaaagctatattacatctctcagaaaatgcagagttgaag |
457 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4480547 |
aagataatttaaattgacacagatgttccagaaaggttctcctctcgtgaaagatgtatcgaaagctatattacatctctcagaaaatgcagagttgaag |
4480448 |
T |
|
| Q |
458 |
agattggaagaaaagtggttacttacctcacaggattgctccaacaacgtgacatcctccaacggtacggatagtttgaaacttggaagcttatgggctc |
557 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4480447 |
agattggaagaaaagtgg-tacttacctcacaggattgctccaataatgtgacatcctccaacggtacggatagtttgaaacttggaagcttatgggctc |
4480349 |
T |
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| Q |
558 |
tatatgttatctctgc |
573 |
Q |
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| T |
4480348 |
tatatgttatctctgc |
4480333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 377 - 564
Target Start/End: Complemental strand, 4486651 - 4486464
Alignment:
| Q |
377 |
cagatgttccagaaaggttctcctctcgtgaaagatgtatcgaaagctatattacatctctcagaaaatgcagagttgaagagattggaagaaaagtggt |
476 |
Q |
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||||||||||||||||| ||||| || |||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||| |
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| T |
4486651 |
cagatgttccagaaaggctctccccttgtgaaagatgtatcgaaagctatattgcatctctcagaaaaggcagagttgaaaagattggaagaaaagtggt |
4486552 |
T |
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| Q |
477 |
tacttacctcacaggattgctccaacaacgtgacatcctccaacggtacggatagtttgaaacttggaagcttatgggctctatatgt |
564 |
Q |
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|| ||| |||||||||||||||||||||||| |||||||| |||| ||| |||||||||| |||||||||||||||| |||||||| |
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| T |
4486551 |
taattagctcacaggattgctccaacaacgttacatcctcgaacgagacgaatagtttgaatcttggaagcttatgggtcctatatgt |
4486464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 27 - 158
Target Start/End: Complemental strand, 4480950 - 4480819
Alignment:
| Q |
27 |
atctctctctaatgatgacattactaatctgatcccgactagccttttcatgcatccaacgtaacattctcatgtctgctacaaaagattcaacttcatc |
126 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
4480950 |
atctctctctaatgatgacattattaatctgatcccgactagccttttcacacatccaacgtaacattgtcatgtctgctacaaaagattcaacttcatc |
4480851 |
T |
|
| Q |
127 |
gttctacatcttctatcagccataaaacaaaa |
158 |
Q |
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| T |
4480850 |
gttctacatcttctatcagccataaaacaaaa |
4480819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 28 - 109
Target Start/End: Original strand, 12492673 - 12492754
Alignment:
| Q |
28 |
tctctctctaatgatgacattactaatctgatcccgactagccttttcatgcatccaacgtaacattctcatgtctgctaca |
109 |
Q |
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||||||||||||| || |||| ||||||| |||| | |||| ||| || ||||||||||||||| ||||| ||||||||| |
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| T |
12492673 |
tctctctctaatggtgtcattcctaatcttatcctgtctagtcttaccactcatccaacgtaacatcctcatctctgctaca |
12492754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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