View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9936_high_6 (Length: 485)
Name: NF9936_high_6
Description: NF9936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9936_high_6 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 35 - 462
Target Start/End: Complemental strand, 5073664 - 5073242
Alignment:
| Q |
35 |
ctcctattgttgctttaagagctgatatggatgctctttctatgcaggttcattatgctagtccttgaactattgctctcttcaatttagtttttaaagt |
134 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
5073664 |
ctccttttgttgctttaagagctgatatggatgctctttctatgcaggttcattatgctagtccttaaactattgctctcttcaatttagtttttaaagt |
5073565 |
T |
|
| Q |
135 |
atatgaaatcgttaatttcatctctaaagtatatgaaaaatccgtcaattttgttggtaacatcttaatagtaacatttaatagcagcgactaaattgtc |
234 |
Q |
| |
|
||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5073564 |
atatgaaatcgttaatttcgtctctgaagtatatgaaaaatccgtcaattttgttggtgacatcttaatagtaacatttaatagcagcgactaaattgtc |
5073465 |
T |
|
| Q |
235 |
tgagtttgtatactttatgtactacttttaagaactaaaatgttttattcattagcgtgagacatccttacaaatcactttctataaactctatttagac |
334 |
Q |
| |
|
|||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5073464 |
tgagtttgtatact-----tactac-tttaagaactaaaatgttttattcattagcgtgagacatccttacaaatcactttctataaactctatttagac |
5073371 |
T |
|
| Q |
335 |
cttatctctttttcaca-nnnnnnncttcttctaataaactacttgattttctttttgcacgataaatgttagtaattagttcttcgtaatgttaatgtt |
433 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5073370 |
cttatctctttttcacattttttttcttcttctaataaactacttgattttctttttgcacgataaatgttagtaattagttcttcgtaatgttaatgtt |
5073271 |
T |
|
| Q |
434 |
aggggagagttcgaatccatgtcgcctct |
462 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
5073270 |
aggggagagttcgaatccatgtcgcctct |
5073242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 129 - 206
Target Start/End: Original strand, 2055513 - 2055591
Alignment:
| Q |
129 |
taaagtatatgaaatcgtt-aatttcatctctaaagtatatgaaaaatccgtcaattttgttggtaacatcttaatagt |
206 |
Q |
| |
|
||||||||||||||||| | ||||| ||||||||||||||||||||| |||||||| || | ||||||||||||| |
|
|
| T |
2055513 |
taaagtatatgaaatcggtcaatttagtctctaaagtatatgaaaaattggtcaatttagtccttcacatcttaatagt |
2055591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 113 - 173
Target Start/End: Complemental strand, 5099561 - 5099500
Alignment:
| Q |
113 |
tcttcaatttagtttttaaagtatatgaaat-cgttaatttcatctctaaagtatatgaaaa |
173 |
Q |
| |
|
|||| |||||||| |||||| |||||||||| ||||||||| || |||||||||||||||| |
|
|
| T |
5099561 |
tcttaaatttagtctttaaactatatgaaatccgttaatttagtccctaaagtatatgaaaa |
5099500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 72
Target Start/End: Complemental strand, 43206438 - 43206385
Alignment:
| Q |
19 |
ataggaactggaaatcctcctattgttgctttaagagctgatatggatgctctt |
72 |
Q |
| |
|
||||||||||| ||||||| |||||||| | ||||||||||||||||||||| |
|
|
| T |
43206438 |
ataggaactggtcttcctccttttgttgctcttagagctgatatggatgctctt |
43206385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University