View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9936_high_8 (Length: 468)
Name: NF9936_high_8
Description: NF9936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9936_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 386; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 18 - 455
Target Start/End: Complemental strand, 49702858 - 49702421
Alignment:
| Q |
18 |
ctctcgatctcatgctttatgttatgacttatgatcagcacttgnnnnnnnnnnnngaaaggtattgtccaactgcattaagtcattgtaggactgaaga |
117 |
Q |
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| T |
49702858 |
ctctcgatctcatgctctatgttatgacttatgatcagcacttgttttttatttttgaaaggtattgtccaactgcattaagtcattgtaggactgaaga |
49702759 |
T |
|
| Q |
118 |
gtacctttggcatttggatcagcaccaaactttagaagcagagttacaaaagactcattaccattagaagctgagatatgctgtaacattagaaagtaaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49702758 |
gtacctttggcatttggatcagcaccaaactttagaagcagagttacaaaagactcattaccattagaagctgagatatgctgtaacattagaaagtaaa |
49702659 |
T |
|
| Q |
218 |
gctgtaagcgtctagtattgtgtctaatgaatctaaacatatatggttatgtacgtttgtgtctttgttcatgcaaggaaagaaaatctacaaaccagtg |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| |
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| T |
49702658 |
gctgtaagcgtctagtattgtgtctaatgaatctaaacatatatggttatgtacgtttgtgtatttgttcatgcaaggaaagaaaatccacaaaccagtg |
49702559 |
T |
|
| Q |
318 |
ctgttcttccattcctgtctgtttcatttggatctgagcccttcttcagcaaccgttgtaacagtcgtttgtcacttctgcctgctgcaaagcatgtgct |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49702558 |
ctgttcttccattcctgtctgtttcatttggatctgagcccttcttcagcaaccgttgtaacagtcgtttgtcacttctgcctgctgcaaagcatgtgct |
49702459 |
T |
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| Q |
418 |
gataggtagatccgttttaccacgagccaacatggcct |
455 |
Q |
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|||||||||||| ||||||||||||||||||||||||| |
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| T |
49702458 |
gataggtagatctgttttaccacgagccaacatggcct |
49702421 |
T |
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