View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9936_low_10 (Length: 472)
Name: NF9936_low_10
Description: NF9936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9936_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 361; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 1 - 454
Target Start/End: Complemental strand, 3085495 - 3085041
Alignment:
| Q |
1 |
gtaaaggcgtgtggctaatttggcatgctgcactttgcgtgatttggagggaaagaaacaaaagaattcatcacaatagggtgcgaacgattgatgaaat |
100 |
Q |
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| T |
3085495 |
gtaaaggtgtgtggctaatttggcatgccgcgctttgcgtgatttggagggaaagaaacaaaagaattcatcacaatagggtgcgaacgattgatgaaat |
3085396 |
T |
|
| Q |
101 |
agtggaagagataaaagttcgataatggcatattggagttaaagtagattgaaaatagatccctg--tctttttatgagtagacttggaacccaaaagat |
198 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
3085395 |
agtggaagagataaaagttcgataatggcatattggagttaaagtagattgaaaatagatccctgtctctttttatgagtagacttggaacccaaaagat |
3085296 |
T |
|
| Q |
199 |
tgtttaagaagatgaaaaggggtggcttttgtccattcttttcccgtggggttagtgttgggctgagacatcaagtgtacactcttgcgtggtagttttt |
298 |
Q |
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|||||||| |||||||||||||||| |||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
3085295 |
tgtttaaggagatgaaaaggggtggtttttgtccattc-tttcccgtggggttagtgctgggctgagacatcaagtgtacactcttgcgtggtagttttt |
3085197 |
T |
|
| Q |
299 |
ggtgtagggctggctatggccatgcttatgtttgatctccctccattgctgttcagctgannnnnnnncctgttgttatgttgtcgacagctgcagttcg |
398 |
Q |
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|||||||||||| ||||||| || |||||||||||||||||||||||||||||| ||||| |||||||||||||||| ||||||||||||||| |
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| T |
3085196 |
ggtgtagggctgcctatggctattcttatgtttgatctccctccattgctgttcggctgattttttttcctgttgttatgttgttgacagctgcagttcg |
3085097 |
T |
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| Q |
399 |
gctgctatgagtattgtatcagaagttttttattcggcaatttttgggggatgtgt |
454 |
Q |
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| T |
3085096 |
gctgctatgagtattgtatcagacgttttttattcggcattttttgggggatgtgt |
3085041 |
T |
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