View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9936_low_12 (Length: 455)
Name: NF9936_low_12
Description: NF9936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9936_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 163; Significance: 7e-87; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 163; E-Value: 7e-87
Query Start/End: Original strand, 275 - 445
Target Start/End: Original strand, 46036092 - 46036262
Alignment:
| Q |
275 |
aatacataatacaattgagacaacaattttatgctggaattctggaagaaaagaaaaatccctatcataaattaaaccaaataggctcttatcagtgagt |
374 |
Q |
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| T |
46036092 |
aatacataatacaattgagacaacaattttatgctggaattctgaaagaaaagaaaaatccctatcataaattaaaccaaataggctcttatcaatgagt |
46036191 |
T |
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| Q |
375 |
atttttaggcataaatgaaaattcaaatattcatccatccaatgttcttgttgcgactgctttgtcctatg |
445 |
Q |
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| T |
46036192 |
atttttaggcataaatgaaaattcaaatattcatccatccaatgttcttgttgcgactgctttgtcctatg |
46036262 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 133 - 283
Target Start/End: Original strand, 46034968 - 46035118
Alignment:
| Q |
133 |
tactacacaaagtgggttgattattatgagaaaaatagacccatcaaatttaattttatttcttatgattatcatcattttgcaaatagaaacagaggtt |
232 |
Q |
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| T |
46034968 |
tactacacaaagtggattgattaatatgagaaaaatagacccatcaaattttattttatttcttatgattatcatcattttgcaaatagaaacagaggtt |
46035067 |
T |
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| Q |
233 |
aatatgtacaccaccaattctggcattggctagctagctacaaatacataa |
283 |
Q |
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| T |
46035068 |
aatatgtacaacaccaattctggcattggctagctagctacaaatacataa |
46035118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 18 - 103
Target Start/End: Original strand, 46034886 - 46034971
Alignment:
| Q |
18 |
acttgtttagtttttcatgtcttcaaactctatatctttgttataatgtgatgttcctttggctttcccaactatagttgtatact |
103 |
Q |
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| T |
46034886 |
acttgtttagtttttcatgtcttcaaactctatatctttgttataatgtgatgttcctttggctttcccagctatagttgtatact |
46034971 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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