View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9936_low_13 (Length: 439)
Name: NF9936_low_13
Description: NF9936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9936_low_13 |
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Alignment Details
Target: chr6 (Bit Score: 354; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 7 - 429
Target Start/End: Original strand, 29141597 - 29142019
Alignment:
| Q |
7 |
actagtcctaacaatcttagttgttgtctaaaaagagctgtgtttgagttatagtcattctgtttcggaattggaagggagatgcggttggactatagtg |
106 |
Q |
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| T |
29141597 |
actagtcctaacaatcttagttgttgtctaaaaagggctgtgtttgagttatagtcattctgtttcggaattggaagggagatgcggttggactatagcg |
29141696 |
T |
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| Q |
107 |
nnnnnnnacgctgggggagcttagatgtattggatttgaaagactgcgagaaaaaagactagatatatgtactttgtgacaattaggtacttttcacttc |
206 |
Q |
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| T |
29141697 |
tttttttacgctgggggaacttagatgtattggatttgaaagactgcgagaaaaaagattagatatatgtactttgtgacaattaggtacttttcatttc |
29141796 |
T |
|
| Q |
207 |
aagttctcaccattgttgtgttacaacattatcattttgtaacatgcacttgtgatttttatgcagatcgattaaattttgttaatgcataggggtagct |
306 |
Q |
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| T |
29141797 |
aatttctcatcattgttgtgttacaacagtatcattttgtaacatgcacttgtgatttttatgcagattgattaaattttgttaatgcataggggtagct |
29141896 |
T |
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| Q |
307 |
ttattttgtacgtttggagaaagtcacatttgattcatagcttttacttaccgacacaaaatgagttcgtttggtgtaactttaaagagaaatgttatct |
406 |
Q |
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| T |
29141897 |
ttattttgtacgtttagagaaagtcacatttgattcatagcttttacttaccgacacaaaatgagttcatttggtgtaactttaaagagaaatgttatct |
29141996 |
T |
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| Q |
407 |
ttgcagggtttcggctctctctg |
429 |
Q |
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| T |
29141997 |
ttgcagggtttcggctctttctg |
29142019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 271 - 368
Target Start/End: Original strand, 34254650 - 34254747
Alignment:
| Q |
271 |
agatcgattaaattttgttaatgcataggggtagctttattttgtacgtttggagaaagtcacatttgattcatagcttttacttaccgacacaaaat |
368 |
Q |
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| T |
34254650 |
agattgattgaattttcttaatgctcaagggtagctttgttttgtatgtttggagaaagtcacatttgatacgtagcttttacttaccgacacaaaat |
34254747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 126 - 252
Target Start/End: Original strand, 29014189 - 29014315
Alignment:
| Q |
126 |
cttagatgtattggatttgaaagactgcgagaaaaaagactagatatatgtactttgtgacaatt--aggtacttttcacttcaagttctcaccattgtt |
223 |
Q |
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| T |
29014189 |
cttagatgta--ggattttgaagaatgcgagaaaacagaccagatatatgtacttcgtgacaaattaaggtacttttgacttcaatttctcatcattgtt |
29014286 |
T |
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| Q |
224 |
gtgttacaacattatcattttgtaacatg |
252 |
Q |
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| T |
29014287 |
ctgttacaactgtatcattttgtaacatg |
29014315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 343 - 399
Target Start/End: Original strand, 29014420 - 29014476
Alignment:
| Q |
343 |
atagcttttacttaccgacacaaaatgagttcgtttggtgtaactttaaagagaaat |
399 |
Q |
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| T |
29014420 |
atagcttttacttaccgacactagatgagttagttcagtgtaactttaaagtgaaat |
29014476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 360 - 413
Target Start/End: Original strand, 37896888 - 37896941
Alignment:
| Q |
360 |
acacaaaatgagttcgtttggtgtaactttaaagagaaatgttatctttgcagg |
413 |
Q |
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| T |
37896888 |
acacaaaatgagttagtttggtgtaactttaaactgaaatgttaacttcgcagg |
37896941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 380 - 415
Target Start/End: Original strand, 29115327 - 29115362
Alignment:
| Q |
380 |
gtgtaactttaaagagaaatgttatctttgcagggt |
415 |
Q |
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||||||||||||| |||||||||||||||||||||| |
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| T |
29115327 |
gtgtaactttaaacagaaatgttatctttgcagggt |
29115362 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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