View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9936_low_14 (Length: 426)
Name: NF9936_low_14
Description: NF9936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9936_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 349; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 2 - 407
Target Start/End: Complemental strand, 32084665 - 32084272
Alignment:
| Q |
2 |
gatgatgctggtggcgaagagggggaagaaagaagtggtgatggatttgatggcttcttttagtttgaccggtcgatcaaagaaggcgtggaagacgctg |
101 |
Q |
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| T |
32084665 |
gatgatgctggtggcgaagagggggaagaaagaagtggtgatggatttgatggcttcttttagtttgaccggtcgatcaaagaaggcgtggaagacgctg |
32084566 |
T |
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| Q |
102 |
taggtgacggtgatgacggcgccataactgaagatggaagagataagtaagaagatgattgataaaaaggtgattgtgctgtggttgctgggtggttgct |
201 |
Q |
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| T |
32084565 |
taggtgatggtgatgacggcgccataactgaagatggaagagataagtaagaagatgatagataaaaaggtgattgtgctgtggtttctgggtggttgct |
32084466 |
T |
|
| Q |
202 |
gttgaaggtgtttgaaaatgagtttgaagatgtgggagaggaaagagaggggaaggaggaagatgaggtagagattaaggtagtgacgaggttgagaatt |
301 |
Q |
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| T |
32084465 |
gttgaaggtgtt------------tgaagatttgggagaggaaagagaggggaaggaggaagatgaggtagagattaaggtagtgacgaggttgagaatt |
32084378 |
T |
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| Q |
302 |
tattatgcgtttagattcagagagaagatcccacatttttggagccatggtgtaagagagactaggcttttgtgaactttttcaccatgtatacttcggt |
401 |
Q |
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| T |
32084377 |
tattatgcgtttagattcagagagaagatcccacatttttggagccatggtgtaagagagactaggcttttgtgaactttttcaccatgtatacttcggt |
32084278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 11 - 357
Target Start/End: Complemental strand, 32080071 - 32079725
Alignment:
| Q |
11 |
ggtggcgaagagggggaagaaagaagtggtgatggatttgatggcttcttttagtttgaccggtcgatcaaagaaggcgtggaagacgctgtaggtgacg |
110 |
Q |
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| T |
32080071 |
ggtggcgaggagggggaagaaggaagtgatgatggatttgagggcttctttgagtttgactggtcggttaaagcaagcgtggaagacgctgtaggtgatg |
32079972 |
T |
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| Q |
111 |
gtgatgacggcgccataactgaagatggaagagataagtaagaagatgattgataaaaaggtgattgtgctgtggttgctgggtggttgctgttgaaggt |
210 |
Q |
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| T |
32079971 |
gtgatgacggcgccaaaggcgatgatgcaagagagaatgatgaagaggagatacaaggagatgattgtggtggggtttgtggagagttgctgttgaaagt |
32079872 |
T |
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| Q |
211 |
gtttgaaaatgagtttgaagatgtgggagaggaaagagaggggaaggaggaagatgaggtagagattaaggtagtgacgaggttgagaatttattatgcg |
310 |
Q |
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| T |
32079871 |
ttttggaaatgaattggaagaggagggataagaaagagagaggtaggaggaagatgagggagagagtgaggtagtgatgaggttgagaatttactatgct |
32079772 |
T |
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| Q |
311 |
tttagattcagagagaagatcccacatttttggagccatggtgtaag |
357 |
Q |
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| T |
32079771 |
tttagattctgatagaacattccacatatttggagccatggtataag |
32079725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 11 - 351
Target Start/End: Complemental strand, 32087207 - 32086876
Alignment:
| Q |
11 |
ggtggcgaagagggggaagaaagaagtggtgatggatttgatggcttcttttagtttgaccggtcgatcaaagaaggcgtggaagacgctgtaggtgacg |
110 |
Q |
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| T |
32087207 |
ggtggcaaggagggggaagaaagaagtggtgatggatttgatggcttctttgagtttgacgggttgattaaagaaggcgttgtatacgctataagtgatg |
32087108 |
T |
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| Q |
111 |
gtgatgacggcgccataactgaagatggaagagataagtaagaagatgattgataaaaaggtgattgtgctgtggttgctgggtggttgctgttgaaggt |
210 |
Q |
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| T |
32087107 |
gcgatgaaggcgctgtaggagaagatggaagataaaatcaagaagaggagatacaaggagatgattatgg-gtggttg--------ttgctgttgaaggt |
32087017 |
T |
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| Q |
211 |
gtttgaaaatgagtttgaagatgtgggagaggaaagagaggggaaggaggaagatgaggtagagattaaggtagtgacgaggttgagaatttattatgcg |
310 |
Q |
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|||||| ||||||||| ||||| || ||| ||||||| ||||||||||||||||||| ||||| | |||||||||||||||||||||||||||||| | |
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| T |
32087016 |
gtttgataatgagtttagagatgaggatgagaaaagagaagggaaggaggaagatgagggagagagtgaggtagtgacgaggttgagaatttattatgtg |
32086917 |
T |
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| Q |
311 |
tttagattcagagagaagatcccacatttttggagccatgg |
351 |
Q |
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| | ||||||||||||| || ||| || |||||||||||| |
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| T |
32086916 |
tatggattcagagagaacattccaaatgcttggagccatgg |
32086876 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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