View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9936_low_18 (Length: 386)
Name: NF9936_low_18
Description: NF9936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9936_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 367
Target Start/End: Original strand, 15376594 - 15376955
Alignment:
| Q |
1 |
aagacattaaatagtttaaaatattaacataatcaaatattacttttagaatgacttacataaacataaatcaatttgatggtttacttctattttaaaa |
100 |
Q |
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| T |
15376594 |
aagacattaaatagtttaaaatattaacataatcaaatattacttttagaatgacttacagaaatat----------gatgatttatttctattttaaaa |
15376683 |
T |
|
| Q |
101 |
ataagta----tcactaaattttaccaaggggttgttgaggtaattttcaccctccacaagcacatgctttgtacaactggcgctaaaaaatcagaaaac |
196 |
Q |
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| T |
15376684 |
ataaataaatatcactaaattttaccaaggggttgttgaggtaattttctgcctccacaagcacatgctttgtacaactggcgctaaaaaatcagaaaac |
15376783 |
T |
|
| Q |
197 |
ccannnnnnn-cccgggaaaccaaaaatctccttccaaaatcgcatatttatattcaaacaaacacccaaagcacttacaacaagtacctttcatcaaca |
295 |
Q |
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| T |
15376784 |
ccattttttttcccgggaaaccaaaaatctccttccaaaatcgcatatttatattcaaacaaacactcaaagaacttacaacaagtacctttcatcaaca |
15376883 |
T |
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| Q |
296 |
acccacactctctcccacttcacactctcaccaccatcaacgctatccactccggcggcgacttctccgatc |
367 |
Q |
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| T |
15376884 |
acccacactctctcccacttcacactctcaccaccatcaacgctatcctctccggcggcaacttctccgatc |
15376955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 38 - 88
Target Start/End: Complemental strand, 45122363 - 45122313
Alignment:
| Q |
38 |
tattacttttagaatgacttacataaacataaatcaatttgatggtttact |
88 |
Q |
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| T |
45122363 |
tattaatttaagaatgacttacaaaaacatagatcaatttgatggtttact |
45122313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 88
Target Start/End: Complemental strand, 6219676 - 6219603
Alignment:
| Q |
15 |
tttaaaatattaacataatcaaatattacttttagaatgacttacataaacataaatcaatttgatggtttact |
88 |
Q |
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||||||||||||| | ||||| | | || ||| ||||||||||| | | ||| ||||||||||||||||||||| |
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| T |
6219676 |
tttaaaatattaataaaatcatagactagtttaagaatgacttataaagacaaaaatcaatttgatggtttact |
6219603 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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