View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9936_low_19 (Length: 382)

Name: NF9936_low_19
Description: NF9936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9936_low_19
NF9936_low_19
[»] chr4 (13 HSPs)
chr4 (1-375)||(6997206-6997580)
chr4 (90-365)||(7015738-7016014)
chr4 (63-365)||(7042350-7042656)
chr4 (83-365)||(7058424-7058704)
chr4 (86-365)||(7049503-7049786)
chr4 (89-179)||(7006175-7006265)
chr4 (250-365)||(7029193-7029307)
chr4 (86-179)||(7022827-7022920)
chr4 (269-365)||(7022442-7022537)
chr4 (89-179)||(7008021-7008111)
chr4 (90-179)||(7029582-7029671)
chr4 (239-361)||(7007122-7007244)
chr4 (305-361)||(7006032-7006088)
[»] chr3 (1 HSPs)
chr3 (103-181)||(46176068-46176146)
[»] chr2 (1 HSPs)
chr2 (104-168)||(5887768-5887832)


Alignment Details
Target: chr4 (Bit Score: 355; Significance: 0; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 1 - 375
Target Start/End: Complemental strand, 6997580 - 6997206
Alignment:
Q  1 tggtgggtgataactgagcaaaggagtgaattgacaaacgaacatctcatgcttatataaccatattaattccatctagggattctgatttacaaaggca 100  Q
    |||||| ||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6997580 tggtggttgataactgagcaaaggagtgaattgaaaaatgaacatctcatgcttatataaccatattaattccatctagggattctgatttacaaaggca 6997481  T
Q  101 agttagatatccacctagtgaacatggcaaaacattgctcaggagtgtactctggagctgtatgtcctgaaccctgcaattaattaagcaaaaatcatta 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  6997480 agttagatatccacctagtgaacatggcaaaacattgctcaggagtgtactcaggagctgtatgtcctgaaccctgcaattaattaagcaaaaatcatta 6997381  T
Q  201 taatgaatttgcataatccctttgaagacactgaaatatttcaccaatttgagtgttattcttaaaagaacaaaatatcacttgttatttaattagtcaa 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6997380 taatgaatttgcataatccctttgaagacactgaaatatttcaccaatttgagtgttattcttaaaagaacaaaatatcacttgttatttaattagtcaa 6997281  T
Q  301 gttcttaccttcacggttgcaaaagtcattcgattcgagtatgtccttgtgtatctgcatgaaagaattgatgat 375  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  6997280 gttcttaccttcacggttgcaaaagtcattcgattcgagtatgtccttgtgtatctgcatgaaagaattgttgat 6997206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 90 - 365
Target Start/End: Complemental strand, 7016014 - 7015738
Alignment:
Q  90 ttacaaaggcaagttagatatccacctagtgaacatggcaaaacattgctcaggagtgtactctggagctgtatgtcctgaaccctgc--aattaattaa 187  Q
    ||||||||| || |||||||||||||||||||||||| |||||||||| |||||||||||||| ||||||||||||||||||||||||  ||||||||||    
T  7016014 ttacaaaggtaaattagatatccacctagtgaacatgccaaaacattgatcaggagtgtactcaggagctgtatgtcctgaaccctgcaaaattaattaa 7015915  T
Q  188 gcaaaaatcattataatgaatttgcataatccctttgaagacactgaaatatttcaccaatttgagtgttattcttaaaagaacaaaatatcacttgtta 287  Q
     ||||| ||  ||||||||||||| ||||||||||| ||||  || ||||||||||| || |||||||||| |||||||||||||||| | ||||  | |    
T  7015914 tcaaaagtcgatataatgaatttggataatccctttaaagatgcttaaatatttcactaaattgagtgttaatcttaaaagaacaaaaaagcactaatga 7015815  T
Q  288 tttaattagtcaagttcttaccttcacggttgcaaaagtcattcgattcgagtatgtccttgtgtatctgcatgaaag 365  Q
    |||||||||| || ||||||||||||| ||| |||| |||||| |||||||||| ||||||||||||||||| |||||    
T  7015814 tttaattagt-aatttcttaccttcacagttacaaatgtcatttgattcgagtaagtccttgtgtatctgcaagaaag 7015738  T

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Target: chr4; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 63 - 365
Target Start/End: Complemental strand, 7042656 - 7042350
Alignment:
Q  63 atattaattccatctagggattctgatttacaaaggcaagttagatatccacctagtgaacatggcaaaacattgctcaggagtgtactctggagctgta 162  Q
    ||||| ||||||||| | ||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||    
T  7042656 atatttattccatcttgagattctgatttacaaaggcaaattagatatccacctagtgaacatgggaaaacattgctcaggagtgtactcaggagctgta 7042557  T
Q  163 tgtcctgaaccctgc--aattaattaagcaaaaatcattataatgaatttgcataatccctttgaagacactgaaatatt-tcaccaatttga--gtgtt 257  Q
    ||||| |||||||||  |||||||||  | ||||||  | ||| ||  ||| | |||| | |  ||||||||   ||||| ||||||| ||||  |||||    
T  7042556 tgtcccgaaccctgcaaaattaattacacgaaaatcgatctaaagatgttgtacaatctcatcaaagacacttgcatattctcaccaaattgagtgtgtt 7042457  T
Q  258 attcttaaaagaacaaaatatcacttgttatttaattagtcaagttcttaccttcacggttgcaaaagtcattcgattcgagtatgtccttgtgtatctg 357  Q
     || ||||| |||||||| | ||||| | ||||||||| | || ||||||||||||| |||||||| ||||| ||||| | ||| |||||||||||||||    
T  7042456 tttattaaatgaacaaaagagcacttatgatttaattact-aatttcttaccttcacagttgcaaatgtcatgcgatttgcgtaagtccttgtgtatctg 7042358  T
Q  358 catgaaag 365  Q
     |||||||    
T  7042357 tatgaaag 7042350  T

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Target: chr4; HSP #4
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 83 - 365
Target Start/End: Complemental strand, 7058704 - 7058424
Alignment:
Q  83 ttctgatttacaaaggcaagttagatatccacctagtgaacatggcaaaacattgctcaggagtgtactctggagctgtatgtcctgaaccctgc--aat 180  Q
    ||||||||||||||||||| ||||||||||||||||||||||||| ||||||| |||||||||||||||| |||||| |||||||||||||||||  |||    
T  7058704 ttctgatttacaaaggcaaattagatatccacctagtgaacatgggaaaacatagctcaggagtgtactcaggagctatatgtcctgaaccctgcaaaat 7058605  T
Q  181 taattaagcaaaaatcattataatgaatttgcataatccctttgaagacactgaaat-atttcaccaatttgagtg-ttattcttaaaagaacaaaatat 278  Q
    ||||||    |||||   ||||| ||| || || |||  | |  |||||||| ||||  ||||||||| ||||||| || ||||||| ||||||||||||    
T  7058604 taattacatgaaaattgatataaggaaattacacaatttcatcaaagacacttaaatgttttcaccaaattgagtgttttttcttaatagaacaaaatat 7058505  T
Q  279 cacttgttatttaattagtcaagttcttaccttcacggttgcaaaagtcattcgattcgagtatgtccttgtgtatctgcatgaaag 365  Q
    ||||||||| |||||     ||  |||||||||||| |||||| | |||||| | |||||||| |||||||||||||||||||||||    
T  7058504 cacttgtta-ttaat-----aatctcttaccttcacagttgcatatgtcatttggttcgagtaagtccttgtgtatctgcatgaaag 7058424  T

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Target: chr4; HSP #5
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 86 - 365
Target Start/End: Complemental strand, 7049786 - 7049503
Alignment:
Q  86 tgatttacaaaggcaagttagatatccacctagtgaacatggcaaaacattgctcaggagtgtactctggagctgtatgtcctgaaccctgcaa---tta 182  Q
    |||||||||||||||| |||||||||||||||| |||||||| ||||||| |||||||||||||||| |||||| |||||||||||||||||||   |||    
T  7049786 tgatttacaaaggcaaattagatatccacctagagaacatgggaaaacatagctcaggagtgtactcaggagctatatgtcctgaaccctgcaaaattta 7049687  T
Q  183 attaagcaaaaatcattataatgaatttgcataatccctttgaagacactgaaat-atttcaccaatttgagtgttatt-cttaaaagaacaaaatatca 280  Q
    ||||    |||||   | ||| ||| ||||| |||| | |   ||||||| ||||  |||||| || || |||||| || ||||||||||||||| |  |    
T  7049686 attacatgaaaattgatgtaaggaaattgcacaatctcatcagagacacttaaatgttttcacgaaattaagtgtttttacttaaaagaacaaaagagta 7049587  T
Q  281 cttgttatttaattagtcaagttcttaccttcacggttgcaaaagtcattcgattcgagtatgtccttgtgtatctgcatgaaag 365  Q
    ||||| ||||||||| | || ||||||||||||| |||||| | |||||||| |||||||| |||||||||||||||||||||||    
T  7049586 cttgtgatttaattaat-aatttcttaccttcacagttgcatatgtcattcggttcgagtaagtccttgtgtatctgcatgaaag 7049503  T

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Target: chr4; HSP #6
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 89 - 179
Target Start/End: Complemental strand, 7006265 - 7006175
Alignment:
Q  89 tttacaaaggcaagttagatatccacctagtgaacatggcaaaacattgctcaggagtgtactctggagctgtatgtcctgaaccctgcaa 179  Q
    ||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  7006265 tttacaaaggcaaattagatatccacctagtgaacatgggaaaacattgctcaggagtgtactcaggagctgtatgtcctgaaccctgcaa 7006175  T

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Target: chr4; HSP #7
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 250 - 365
Target Start/End: Complemental strand, 7029307 - 7029193
Alignment:
Q  250 tgagtgttattcttaaaagaacaaaatatcacttgttatttaattagtcaagttcttaccttcacggttgcaaaagtcattcgattcgagtatgtccttg 349  Q
    ||||| || ||||||||| ||||||| ||||||||||||||||||||| || ||| ||||||||| |||||||| ||||||||||| ||||| |||||||    
T  7029307 tgagtatttttcttaaaataacaaaagatcacttgttatttaattagt-aatttcctaccttcacagttgcaaatgtcattcgatttgagtaagtccttg 7029209  T
Q  350 tgtatctgcatgaaag 365  Q
    ||||||||||||||||    
T  7029208 tgtatctgcatgaaag 7029193  T

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Target: chr4; HSP #8
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 86 - 179
Target Start/End: Complemental strand, 7022920 - 7022827
Alignment:
Q  86 tgatttacaaaggcaagttagatatccacctagtgaacatggcaaaacattgctcaggagtgtactctggagctgtatgtcctgaaccctgcaa 179  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||  | | | ||||||||||||||||||||||||||    
T  7022920 tgatttacaaaggcaaattagatatccacctagtgaacatggcaaaacattgttcaggagcatccgcaggagctgtatgtcctgaaccctgcaa 7022827  T

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Target: chr4; HSP #9
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 269 - 365
Target Start/End: Complemental strand, 7022537 - 7022442
Alignment:
Q  269 aacaaaatatcacttgttatttaattagtcaagttcttaccttcacggttgcaaaagtcattcgattcgagtatgtccttgtgtatctgcatgaaag 365  Q
    ||||||| ||||||||||||||||||||| || ||||||||||||| |||||||| ||||||||||| ||| | |||||||||||||| ||||||||    
T  7022537 aacaaaagatcacttgttatttaattagt-aatttcttaccttcacagttgcaaatgtcattcgatttgagcaagtccttgtgtatctacatgaaag 7022442  T

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Target: chr4; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 89 - 179
Target Start/End: Complemental strand, 7008111 - 7008021
Alignment:
Q  89 tttacaaaggcaagttagatatccacctagtgaacatggcaaaacattgctcaggagtgtactctggagctgtatgtcctgaaccctgcaa 179  Q
    |||||||| |||| |||||||||||||||  |||||||| |||||||||||||||||||||||  |||||| ||||||| |||||||||||    
T  7008111 tttacaaacgcaaattagatatccacctaaggaacatgggaaaacattgctcaggagtgtactaaggagctatatgtccagaaccctgcaa 7008021  T

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Target: chr4; HSP #11
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 90 - 179
Target Start/End: Complemental strand, 7029671 - 7029582
Alignment:
Q  90 ttacaaaggcaagttagatatccacctagtgaacatggcaaaacattgctcaggagtgtact-ctggagctgtatgtcctgaaccctgcaa 179  Q
    |||||||||||| |||||| ||||||| ||||||||||| |||||||||||||||||| ||| | ||||||||||||||||||||||||||    
T  7029671 ttacaaaggcaaattagatgtccacctggtgaacatggctaaacattgctcaggagtg-actgcaggagctgtatgtcctgaaccctgcaa 7029582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 239 - 361
Target Start/End: Complemental strand, 7007244 - 7007122
Alignment:
Q  239 tttcaccaatttgagtgttatt-cttaaaagaacaaaatatcacttgttatttaattagtcaagttcttaccttcacggttgcaaaagtcattcgattcg 337  Q
    ||||||||| |||| |||| || ||||||||||||||| | ||||||| ||||||||| | || ||||||||||||| |||||||| |||||  ||||||    
T  7007244 tttcaccaaattgactgttttttcttaaaagaacaaaagagcacttgtgatttaattaat-aatttcttaccttcacagttgcaaatgtcatgtgattcg 7007146  T
Q  338 agtatgtccttgtgtatctgcatg 361  Q
    |||  ||||||||| |||||||||    
T  7007145 agtgagtccttgtgcatctgcatg 7007122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 305 - 361
Target Start/End: Complemental strand, 7006088 - 7006032
Alignment:
Q  305 ttaccttcacggttgcaaaagtcattcgattcgagtatgtccttgtgtatctgcatg 361  Q
    |||||||||| |||||||| ||||| ||||| ||||| |||||||||||||||||||    
T  7006088 ttaccttcacagttgcaaatgtcatgcgattggagtaagtccttgtgtatctgcatg 7006032  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 103 - 181
Target Start/End: Original strand, 46176068 - 46176146
Alignment:
Q  103 ttagatatccacctagtgaacatggcaaaacattgctcaggagtgtactctggagctgtatgtcctgaaccctgcaatt 181  Q
    ||||||||||||||| | |||||||| || ||||  ||| |  ||||||||||||| |||||||||| |||||| ||||    
T  46176068 ttagatatccacctactcaacatggctaagcattcttcacgtttgtactctggagccgtatgtcctgcaccctgtaatt 46176146  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 104 - 168
Target Start/End: Complemental strand, 5887832 - 5887768
Alignment:
Q  104 tagatatccacctagtgaacatggcaaaacattgctcaggagtgtactctggagctgtatgtcct 168  Q
    |||||||||||||| | ||||||||||||||||  |||||   | ||||||||||||| ||||||    
T  5887832 tagatatccacctactaaacatggcaaaacattcttcaggtcggaactctggagctgtgtgtcct 5887768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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