View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9936_low_20 (Length: 374)
Name: NF9936_low_20
Description: NF9936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9936_low_20 |
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Alignment Details
Target: chr8 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 24 - 358
Target Start/End: Complemental strand, 36762094 - 36761760
Alignment:
| Q |
24 |
aaattatattttctcatttactgttcctttaatatacgaaatttcggtaaggtgccagaaatattttgctggataatggaggtcaactgaaggtagctgg |
123 |
Q |
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| T |
36762094 |
aaattatattttctcatttactgttcctttaatatacgaaatttcggtaaggtgccagaaatattttgctggataatggaggtcaactgaaggtagctgg |
36761995 |
T |
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| Q |
124 |
atttggcactgtgagattttcactaataacacctgacaaagcattgttagaacagcctgaggccaacattgacccttcaagtaagcttttaagtatttcc |
223 |
Q |
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| T |
36761994 |
atttggcactgtgagattttcactaataacacctgacaaagcattgttagaacagcctgaggccaacattgacccttcaagtaagcttttaagtatttcc |
36761895 |
T |
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| Q |
224 |
atttctttaattggacttcatctccttacaaattgattttggtttttcattcttcagtatctacnnnnnnnacattaaggttcagtttaattataactgg |
323 |
Q |
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| T |
36761894 |
atttctttaattggacttcatctccttacaaattgattttggtttttcattcttcagtatctactttttttacattaaggttcagtttaattataactgg |
36761795 |
T |
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| Q |
324 |
atatttaacatacaaacaatatttgtgagtaaaac |
358 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
36761794 |
atatttaacatacaaacaatatttgtgagtaaaac |
36761760 |
T |
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