View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9936_low_22 (Length: 343)

Name: NF9936_low_22
Description: NF9936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9936_low_22
NF9936_low_22
[»] chr7 (37 HSPs)
chr7 (15-327)||(11472658-11472968)
chr7 (33-261)||(3156937-3157167)
chr7 (17-152)||(31345364-31345499)
chr7 (58-267)||(19440013-19440225)
chr7 (61-267)||(23475266-23475475)
chr7 (18-271)||(37217843-37218099)
chr7 (58-154)||(23533723-23533819)
chr7 (36-127)||(6557871-6557962)
chr7 (202-271)||(5377110-5377179)
chr7 (202-271)||(27063163-27063232)
chr7 (174-271)||(41741449-41741546)
chr7 (17-173)||(3773907-3774063)
chr7 (20-267)||(4101382-4101632)
chr7 (202-267)||(3920563-3920628)
chr7 (202-267)||(18825875-18825940)
chr7 (17-154)||(43550534-43550670)
chr7 (60-120)||(29292573-29292633)
chr7 (202-261)||(3226955-3227014)
chr7 (174-261)||(7780004-7780092)
chr7 (174-261)||(12980373-12980461)
chr7 (174-270)||(16811726-16811822)
chr7 (174-261)||(16866165-16866253)
chr7 (174-261)||(27850335-27850423)
chr7 (174-261)||(35074466-35074554)
chr7 (18-65)||(8265667-8265714)
chr7 (202-261)||(10072491-10072550)
chr7 (174-264)||(30650627-30650718)
chr7 (202-261)||(39456024-39456083)
chr7 (202-261)||(41103681-41103740)
chr7 (174-271)||(18125227-18125325)
chr7 (174-271)||(21702655-21702753)
chr7 (202-252)||(24425405-24425455)
chr7 (213-271)||(39317031-39317089)
chr7 (202-267)||(26622976-26623041)
chr7 (174-261)||(25979926-25980014)
chr7 (174-261)||(38152883-38152971)
chr7 (174-253)||(45708882-45708962)
[»] chr8 (25 HSPs)
chr8 (17-253)||(28345324-28345562)
chr8 (23-271)||(29918446-29918696)
chr8 (17-171)||(36274876-36275029)
chr8 (17-268)||(8545351-8545604)
chr8 (17-267)||(5700189-5700441)
chr8 (17-259)||(30903877-30904123)
chr8 (17-173)||(6388604-6388760)
chr8 (17-266)||(17084111-17084364)
chr8 (146-271)||(14155494-14155621)
chr8 (177-267)||(17469249-17469340)
chr8 (17-82)||(9476194-9476259)
chr8 (159-267)||(14186295-14186405)
chr8 (17-99)||(29416351-29416433)
chr8 (36-152)||(5793437-5793553)
chr8 (174-264)||(45236056-45236147)
chr8 (174-271)||(37960961-37961059)
chr8 (174-261)||(32303052-32303140)
chr8 (205-261)||(40248380-40248436)
chr8 (202-261)||(27932433-27932492)
chr8 (202-260)||(17220732-17220790)
chr8 (202-264)||(24870030-24870092)
chr8 (110-171)||(17108302-17108363)
chr8 (202-267)||(20399612-20399677)
chr8 (205-261)||(4230739-4230795)
chr8 (174-253)||(39445593-39445673)
[»] chr5 (23 HSPs)
chr5 (17-271)||(40187657-40187912)
chr5 (17-253)||(29664804-29665042)
chr5 (17-189)||(7350490-7350663)
chr5 (33-271)||(38972771-38973011)
chr5 (17-196)||(17153002-17153182)
chr5 (35-171)||(457474-457606)
chr5 (44-173)||(18451985-18452114)
chr5 (20-267)||(24207526-24207769)
chr5 (77-271)||(16311293-16311488)
chr5 (41-267)||(27900405-27900631)
chr5 (33-171)||(35583966-35584103)
chr5 (110-197)||(12457443-12457531)
chr5 (174-253)||(15890198-15890277)
chr5 (174-271)||(18207010-18207107)
chr5 (174-261)||(4583110-4583198)
chr5 (174-261)||(4920817-4920905)
chr5 (227-270)||(3573248-3573291)
chr5 (174-264)||(5908695-5908786)
chr5 (202-261)||(20973506-20973565)
chr5 (202-260)||(33728012-33728070)
chr5 (58-154)||(16366567-16366664)
chr5 (174-246)||(35194014-35194087)
chr5 (202-266)||(10822531-10822595)
[»] chr4 (45 HSPs)
chr4 (45-267)||(8843809-8844032)
chr4 (45-267)||(8856773-8856996)
chr4 (33-173)||(17113103-17113242)
chr4 (15-173)||(33616215-33616373)
chr4 (17-196)||(42907726-42907905)
chr4 (17-190)||(36306624-36306798)
chr4 (17-196)||(7334261-7334439)
chr4 (35-173)||(21956914-21957051)
chr4 (18-173)||(25265247-25265401)
chr4 (17-267)||(25940979-25941229)
chr4 (18-126)||(37926401-37926507)
chr4 (17-216)||(21714030-21714231)
chr4 (33-173)||(12075731-12075871)
chr4 (62-152)||(39086040-39086130)
chr4 (17-252)||(25298852-25299088)
chr4 (64-271)||(4741216-4741424)
chr4 (55-127)||(9929313-9929385)
chr4 (35-151)||(30034531-30034647)
chr4 (33-191)||(33516153-33516313)
chr4 (174-271)||(26564828-26564926)
chr4 (174-271)||(55826623-55826721)
chr4 (33-173)||(9280989-9281129)
chr4 (18-83)||(40420765-40420830)
chr4 (174-261)||(11028070-11028158)
chr4 (174-264)||(47550360-47550451)
chr4 (175-264)||(15987269-15987359)
chr4 (16-154)||(35304635-35304773)
chr4 (174-259)||(43893225-43893311)
chr4 (41-122)||(24474965-24475046)
chr4 (202-271)||(37107437-37107505)
chr4 (174-261)||(5902624-5902712)
chr4 (174-253)||(6382290-6382370)
chr4 (174-261)||(7608967-7609055)
chr4 (202-270)||(12825462-12825530)
chr4 (174-253)||(32585486-32585566)
chr4 (186-261)||(32596194-32596270)
chr4 (17-153)||(36918963-36919098)
chr4 (110-190)||(37384205-37384285)
chr4 (174-261)||(44317532-44317620)
chr4 (174-244)||(9230279-9230350)
chr4 (177-271)||(39375278-39375373)
chr4 (174-267)||(1724314-1724408)
chr4 (205-267)||(33615333-33615395)
chr4 (235-271)||(37349171-37349207)
chr4 (117-173)||(40420685-40420741)
[»] chr3 (32 HSPs)
chr3 (17-152)||(27252401-27252535)
chr3 (36-154)||(3385974-3386092)
chr3 (36-190)||(3414614-3414769)
chr3 (17-152)||(26207120-26207251)
chr3 (202-267)||(54317164-54317229)
chr3 (202-271)||(19111754-19111823)
chr3 (17-173)||(772893-773050)
chr3 (71-252)||(30904834-30905016)
chr3 (18-100)||(34592990-34593072)
chr3 (174-261)||(39728662-39728750)
chr3 (205-261)||(48390826-48390882)
chr3 (204-267)||(4016047-4016110)
chr3 (146-271)||(42243349-42243476)
chr3 (174-264)||(52572600-52572691)
chr3 (15-85)||(27937562-27937632)
chr3 (174-271)||(34119647-34119745)
chr3 (174-264)||(43582569-43582659)
chr3 (174-267)||(49025672-49025765)
chr3 (110-170)||(27937665-27937725)
chr3 (174-261)||(34025945-34026033)
chr3 (18-173)||(37032197-37032350)
chr3 (174-261)||(39655282-39655370)
chr3 (174-261)||(44172617-44172705)
chr3 (174-261)||(44179317-44179405)
chr3 (174-261)||(44953444-44953532)
chr3 (174-253)||(52198146-52198226)
chr3 (240-271)||(23910251-23910282)
chr3 (23-85)||(40890203-40890265)
chr3 (209-271)||(42758401-42758463)
chr3 (174-261)||(23546951-23547039)
chr3 (235-271)||(40890393-40890429)
chr3 (174-261)||(49580055-49580143)
[»] chr2 (29 HSPs)
chr2 (17-171)||(29656836-29656991)
chr2 (17-267)||(35248388-35248636)
chr2 (23-154)||(31600886-31601017)
chr2 (17-267)||(35965168-35965420)
chr2 (57-246)||(25210251-25210442)
chr2 (18-127)||(34214801-34214910)
chr2 (57-153)||(13954619-13954715)
chr2 (57-153)||(14095826-14095922)
chr2 (60-190)||(13531827-13531957)
chr2 (17-217)||(30696758-30696960)
chr2 (17-150)||(35409274-35409407)
chr2 (33-144)||(40734711-40734822)
chr2 (55-271)||(40359216-40359434)
chr2 (33-93)||(34544490-34544550)
chr2 (168-264)||(13705367-13705464)
chr2 (110-267)||(17845394-17845554)
chr2 (204-261)||(37106715-37106772)
chr2 (174-261)||(24414141-24414229)
chr2 (174-261)||(37999475-37999563)
chr2 (205-264)||(45115582-45115641)
chr2 (174-271)||(12193826-12193924)
chr2 (213-267)||(34320657-34320711)
chr2 (174-259)||(36128117-36128203)
chr2 (158-266)||(44746113-44746223)
chr2 (174-271)||(45256815-45256913)
chr2 (177-261)||(30846941-30847026)
chr2 (17-65)||(4961609-4961657)
chr2 (204-260)||(37472769-37472825)
chr2 (184-267)||(43371555-43371639)
[»] chr1 (38 HSPs)
chr1 (17-173)||(42729043-42729199)
chr1 (18-173)||(13692479-13692635)
chr1 (17-228)||(41476994-41477207)
chr1 (41-173)||(36421624-36421756)
chr1 (23-196)||(8880288-8880462)
chr1 (33-153)||(39219108-39219228)
chr1 (175-271)||(44615474-44615571)
chr1 (175-271)||(44792998-44793095)
chr1 (17-152)||(45460163-45460299)
chr1 (17-167)||(25181037-25181188)
chr1 (174-264)||(40087470-40087560)
chr1 (202-271)||(35936828-35936897)
chr1 (17-152)||(16903355-16903484)
chr1 (33-101)||(25154998-25155066)
chr1 (204-264)||(34060031-34060091)
chr1 (174-261)||(36187229-36187317)
chr1 (146-271)||(13798201-13798328)
chr1 (17-84)||(14890996-14891063)
chr1 (174-264)||(28297926-28298017)
chr1 (17-253)||(5293422-5293665)
chr1 (202-271)||(9982889-9982958)
chr1 (17-74)||(14902974-14903031)
chr1 (202-271)||(42707836-42707905)
chr1 (112-267)||(47644863-47645019)
chr1 (174-261)||(29936408-29936496)
chr1 (202-261)||(3627994-3628053)
chr1 (174-264)||(49250779-49250870)
chr1 (205-271)||(24710871-24710937)
chr1 (174-271)||(29871284-29871382)
chr1 (202-271)||(36617381-36617451)
chr1 (202-252)||(50426679-50426729)
chr1 (89-126)||(5290448-5290485)
chr1 (206-267)||(16433170-16433231)
chr1 (202-271)||(34085256-34085325)
chr1 (17-101)||(11198278-11198361)
chr1 (174-253)||(12495002-12495082)
chr1 (174-261)||(23490780-23490868)
chr1 (57-97)||(48125847-48125887)
[»] scaffold0244 (1 HSPs)
scaffold0244 (15-173)||(4679-4837)
[»] chr6 (28 HSPs)
chr6 (17-266)||(9402422-9402672)
chr6 (17-150)||(34346136-34346269)
chr6 (35-271)||(20348916-20349153)
chr6 (17-126)||(2126767-2126876)
chr6 (20-190)||(1947872-1948043)
chr6 (18-144)||(8320923-8321049)
chr6 (17-152)||(14321705-14321835)
chr6 (58-261)||(13768946-13769151)
chr6 (17-108)||(24221449-24221540)
chr6 (174-264)||(27534675-27534766)
chr6 (167-271)||(12678093-12678199)
chr6 (160-271)||(256491-256604)
chr6 (202-267)||(14410858-14410923)
chr6 (174-261)||(3483932-3484020)
chr6 (174-261)||(5863392-5863480)
chr6 (17-165)||(10925550-10925698)
chr6 (174-261)||(32853835-32853923)
chr6 (64-149)||(29341131-29341216)
chr6 (202-271)||(32532560-32532629)
chr6 (174-261)||(2367317-2367405)
chr6 (74-144)||(21877136-21877206)
chr6 (202-267)||(14034522-14034587)
chr6 (202-267)||(14506106-14506171)
chr6 (202-267)||(28079699-28079764)
chr6 (114-154)||(372899-372939)
chr6 (174-261)||(10142527-10142615)
chr6 (174-261)||(27738763-27738851)
chr6 (174-261)||(32053079-32053167)
[»] scaffold1322 (1 HSPs)
scaffold1322 (17-173)||(945-1100)
[»] scaffold0184 (1 HSPs)
scaffold0184 (202-271)||(2989-3058)
[»] scaffold0036 (1 HSPs)
scaffold0036 (202-267)||(33413-33478)
[»] scaffold0294 (1 HSPs)
scaffold0294 (203-271)||(14796-14864)
[»] scaffold0135 (1 HSPs)
scaffold0135 (174-244)||(36145-36216)
[»] scaffold0009 (1 HSPs)
scaffold0009 (234-267)||(107394-107427)


Alignment Details
Target: chr7 (Bit Score: 189; Significance: 1e-102; HSPs: 37)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 15 - 327
Target Start/End: Complemental strand, 11472968 - 11472658
Alignment:
Q  15 tagagaagagagaggtcaagagtgtcagatatggaaggatataagagagaactatgataagtgagtgtcatctaaaagactgagactttgactacgtgag 114  Q
    ||||||||||||||||  | ||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||    
T  11472968 tagagaagagagaggtaga-agtgtgagatatggaaggagataagagagaactatgataagtgagtgtcatctaaaagactgagactctaactacgtgag 11472870  T
Q  115 tgaaatgatttaggattttggtttctatttgtataaaaggtatgataaattgattttctcatttgggacgggtttggatatgaatttgggtgggtaccta 214  Q
    |||||||||||||| ||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| ||||| ||||| ||  |||| |||||||    
T  11472869 tgaaatgatttagggttttggtttctatttatataaaaggtataataaattgattttctcatttgggacggatttgggtatgagttcaggtgagtaccta 11472770  T
Q  215 tattcccgttatccatcctatacctgtgttttgaaatcgaggaaaactcaaactcatnnnnnnnnnccaattaaaggggtaaaacccgtcaaattagatt 314  Q
    ||||||||||||||||| ||||||| ||||||||||||| | |||||||||||||||         ||||||||| |||||||||||||||||||| |||    
T  11472769 tattcccgttatccatcttatacctctgttttgaaatcgggaaaaactcaaactcat-accaaaatccaattaaaagggtaaaacccgtcaaattaaatt 11472671  T
Q  315 cggttcgaacagg 327  Q
    |||||||||||||    
T  11472670 cggttcgaacagg 11472658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 33 - 261
Target Start/End: Original strand, 3156937 - 3157167
Alignment:
Q  33 agagtgtcagatatggaaggatataagagagaactatgataagtgagtgtcatctaaaagactgagactttgactacgtgagtgaaatgatttaggattt 132  Q
    ||||||| | ||||||||||| | ||||||||||||| ||||||||||||||||||||||||  ||||| |||||||| |||||||| ||||||||||||    
T  3156937 agagtgtgacatatggaaggaaaaaagagagaactataataagtgagtgtcatctaaaagaccaagactctgactacgcgagtgaaaggatttaggattt 3157036  T
Q  133 tggtttctatttgtataaaaggtatgataaattgattttct-catttgggacgggtttggatatgaatttgg-gtgggtacctatattcccgttatccat 230  Q
     ||||||||||| ||||  |||  | |||||||||||||||   |||||||||||||||| |||   || || |||||||||||||| |||||||||| |    
T  3157037 gggtttctatttatatagtaggggtaataaattgattttctatgtttgggacgggtttgggtataggttcggtgtgggtacctatatccccgttatccgt 3157136  T
Q  231 cctatacctgtgttttgaaatcgaggaaaac 261  Q
    || |||||  | ||||||||||| |||||||    
T  3157137 cccatacccatattttgaaatcggggaaaac 3157167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 17 - 152
Target Start/End: Original strand, 31345364 - 31345499
Alignment:
Q  17 gagaagagagaggtcaagagtgtcagatatggaaggatataagagagaactatgataagtgagtgtcatctaaaagactgagactttgactacgtgagtg 116  Q
    ||||||||||| ||||| | ||| ||||||||||| | | ||||||||| |||||||||||||||||||||||| |||||||||||||| |  |||||||    
T  31345364 gagaagagagaagtcaaaaatgtgagatatggaagaagaaaagagagaattatgataagtgagtgtcatctaaatgactgagactttgattgtgtgagtg 31345463  T
Q  117 aaatgatttaggattttggtttctatttgtataaaa 152  Q
    ||||||| |||  |||  |||||||||| |||||||    
T  31345464 aaatgatatagagtttgagtttctatttatataaaa 31345499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 58 - 267
Target Start/End: Complemental strand, 19440225 - 19440013
Alignment:
Q  58 agagagaactatgataagtgagtgtcatctaaaagactgagactttgactacgtgagtgaaatgatttaggattttggtttctatttgtataaaaggtat 157  Q
    |||||||||  | |||| ||||||||||||  || ||||||||| |||||| ||||||||||||||||||  ||| ||||||||||| ||  |||||  |    
T  19440225 agagagaaccgtaataaatgagtgtcatctggaacactgagactctgactatgtgagtgaaatgatttagagtttgggtttctatttataccaaaggggt 19440126  T
Q  158 gataaattgattttct--catttgggacgggtttggatatgaatttg-ggtgggtacctatattcccgttatccatcctatacctgtgttttgaaatcga 254  Q
    | |||||||||||| |  |||| ||||||||||||| ||||  || |  |||||||| ||||| ||| ||| |||||| | ||| ||||||| |||||      
T  19440125 ggtaaattgatttttttacattcgggacgggtttgggtatgggttcgaagtgggtacatatatccccattacccatcccaaacccgtgttttcaaatcag 19440026  T
Q  255 ggaaaactcaaac 267  Q
    |||||||||||||    
T  19440025 ggaaaactcaaac 19440013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 61 - 267
Target Start/End: Complemental strand, 23475475 - 23475266
Alignment:
Q  61 gagaactatgataagtgagtgtcatctaaaagactgagactttgactacgtgagtgaaatgatttaggattttggtttctatttgtataaaaggtatgat 160  Q
    ||||||| | |||| |||||||||||| ||| |||| |||| |||||| ||||||||||||||||||  ||| ||||| ||||| || |||| |  |  |    
T  23475475 gagaactgtaataaatgagtgtcatctgaaacactgggactctgactatgtgagtgaaatgatttagagtttgggtttttatttatacaaaacgggtagt 23475376  T
Q  161 aaattgattttct--catttgggacgggtttggatatgaatttg-ggtgggtacctatattcccgttatccatcctatacctgtgttttgaaatcgagga 257  Q
    ||||||||||| |  |||| ||||||||||||| ||||  || |  |||||||| ||||| ||| ||| |||||| | ||| |||||||||||||| | |    
T  23475375 aaattgatttttttacattcgggacgggtttgggtatgggttcgaagtgggtacatatatccccattacccatcccaaacccgtgttttgaaatcgggaa 23475276  T
Q  258 aaactcaaac 267  Q
    |||| |||||    
T  23475275 aaacccaaac 23475266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 18 - 271
Target Start/End: Original strand, 37217843 - 37218099
Alignment:
Q  18 agaagagagaggtcaagagtgtcagatatggaaggatataagagagaactatgataagtgagtgtcatctaaaagactgagactttgactacgtgagtga 117  Q
    |||| ||||||| | ||||||| ||||||||||||| | ||||||||||||||||| ||||||||||| | ||| || |||||| ||| |  || ||| |    
T  37217843 agaaaagagaggccgagagtgtgagatatggaaggagagaagagagaactatgatatgtgagtgtcatatgaaaaaccgagactctgattgtgttagtaa 37217942  T
Q  118 aatgatttaggattttggtttctatttgtataaaaggtatgataaattgattttct-catttgggacgggttt-ggatatgaatttggg-tgggtaccta 214  Q
    |||||||||||  ||  |||||||||| || |||||  || || ||||||||||||  |||  |||||||||| || ||||| || ||| | ||||| ||    
T  37217943 aatgatttaggcattgagtttctatttatacaaaagagataat-aattgattttctatattcaggacgggtttggggtatgagttcgggcttggtactta 37218041  T
Q  215 tat-tcccgttatccatcctatacctgtgttttgaaatcgaggaaaactcaaactcat 271  Q
    |||  ||||||| || |||  ||||||||||||||||| |   |||||||||||||||    
T  37218042 tatcccccgttacccgtcccgtacctgtgttttgaaataggataaaactcaaactcat 37218099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 58 - 154
Target Start/End: Complemental strand, 23533819 - 23533723
Alignment:
Q  58 agagagaactatgataagtgagtgtcatctaaaagactgagactttgactacgtgagtgaaatgatttaggattttggtttctatttgtataaaagg 154  Q
    |||||||||| | |||| |||||||||||| ||| ||||||||| |||||| ||||||||||||||||||  ||| |||||||| || || ||||||    
T  23533819 agagagaactgtaataaatgagtgtcatctgaaacactgagactctgactatgtgagtgaaatgatttagagtttgggtttctaattatacaaaagg 23533723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 36 - 127
Target Start/End: Complemental strand, 6557962 - 6557871
Alignment:
Q  36 gtgtcagatatggaaggatataagagagaactatgataagtgagtgtcatctaaaagactgagactttgactacgtgagtgaaatgatttag 127  Q
    |||| |||| |||||||| |  ||||||||||  || ||||||||||||||| ||||||||||||||||| |  ||||||||||||||||||    
T  6557962 gtgtgagatgtggaaggagaagagagagaacttagagaagtgagtgtcatctgaaagactgagactttgattgtgtgagtgaaatgatttag 6557871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 202 - 271
Target Start/End: Original strand, 5377110 - 5377179
Alignment:
Q  202 gggtgggtacctatattcccgttatccatcctatacctgtgttttgaaatcgaggaaaactcaaactcat 271  Q
    |||||||||||||||| ||| ||| || ||| |||||||||||||||||||| ||||||| |||||||||    
T  5377110 gggtgggtacctatataccctttacccgtcccatacctgtgttttgaaatcggggaaaacccaaactcat 5377179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 202 - 271
Target Start/End: Original strand, 27063163 - 27063232
Alignment:
Q  202 gggtgggtacctatattcccgttatccatcctatacctgtgttttgaaatcgaggaaaactcaaactcat 271  Q
    ||||| |||| ||||| |||||||||| |||| |||| || |||||||||||||||||||||||||||||    
T  27063163 gggtgagtacatatatccccgttatccgtcctgtacccgtattttgaaatcgaggaaaactcaaactcat 27063232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 174 - 271
Target Start/End: Complemental strand, 41741546 - 41741449
Alignment:
Q  174 catttgggacgggtttggatatgaatttgggtgggtacctatattcccgttatccatcctatacctgtgttttgaaatcgaggaaaactcaaactcat 271  Q
    |||||||||||||| || |||||  || ||||||||||||| || |||||||||| ||  ||||| |||||||||||||| ||||||| || ||||||    
T  41741546 catttgggacgggtatgaatatgggttcgggtgggtacctacatacccgttatccgtctcatacccgtgttttgaaatcggggaaaacccatactcat 41741449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 17 - 173
Target Start/End: Original strand, 3773907 - 3774063
Alignment:
Q  17 gagaagagagaggtcaagagtgtcagatatggaaggatataagagagaactatgataagtgagtgtcatctaaaagactgagactttgactacgtgagtg 116  Q
    ||||||||||||| | ||||||| ||  ||| ||||| | |||| ||||||||||||| || ||||||| | |||| |||| ||| |||||  ||||||     
T  3773907 gagaagagagaggccgagagtgtgaggcatgaaaggagaaaagatagaactatgataaatgggtgtcatatgaaagtctgaaactctgactgtgtgagta 3774006  T
Q  117 aaatgatttaggattttggtttctatttgtataaaaggtatgataaattgattttct 173  Q
    ||||||||| |  ||| |||| ||| || |||||||||  | |||||||||||||||    
T  3774007 aaatgattttgcgtttgggttcctaattatataaaaggggtaataaattgattttct 3774063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 20 - 267
Target Start/End: Original strand, 4101382 - 4101632
Alignment:
Q  20 aagagagaggtcaagagtgtcagatatggaaggatataagagagaactatgataagtgagtgtcatctaaaagactga-gactttgactacgtgagtgaa 118  Q
    |||||||||||| ||| ||| | |||| |||||| | |||| |||||||||| || | ||||||| |||||||||||| |  ||||| |  |||||||||    
T  4101382 aagagagaggtcgagattgtgatatatcgaaggagaaaagaaagaactatgacaaataagtgtcaactaaaagactgagggttttgattgtgtgagtgaa 4101481  T
Q  119 atgatttaggattttggtttctatttgtataaaaggtatgataaattgattttc-tcatttgggacgggtttggatatgaatt-tgggtgggtacctata 216  Q
    |||||| ||| |||  |||| |||||  ||||||    | ||||||||||||||  ||||  ||||||||| || ||||  ||  || ||||||| ||||    
T  4101482 atgattaagggtttgagtttttatttaaataaaattggtaataaattgattttcaacattcaggacgggttagggtatgggttcaggatgggtacatata 4101581  T
Q  217 ttcccgttatccatcctatacctgtgttttgaaatcgaggaaaactcaaac 267  Q
    | || || | ||||||| ||||||||||||||||||  ||||||| |||||    
T  4101582 tccctgtaacccatcctgtacctgtgttttgaaatcatggaaaacccaaac 4101632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 202 - 267
Target Start/End: Original strand, 3920563 - 3920628
Alignment:
Q  202 gggtgggtacctatattcccgttatccatcctatacctgtgttttgaaatcgaggaaaactcaaac 267  Q
    |||||||||||||||| || ||||||| ||| ||||| |||||||||||||| ||||||| |||||    
T  3920563 gggtgggtacctatatacctgttatccgtcccataccagtgttttgaaatcggggaaaacccaaac 3920628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 202 - 267
Target Start/End: Complemental strand, 18825940 - 18825875
Alignment:
Q  202 gggtgggtacctatattcccgttatccatcctatacctgtgttttgaaatcgaggaaaactcaaac 267  Q
    |||||||||||||||| ||||||| || ||| ||||| |||||||||||||| ||||||| |||||    
T  18825940 gggtgggtacctatatacccgttacccgtcccatacccgtgttttgaaatcggggaaaacccaaac 18825875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 154
Target Start/End: Complemental strand, 43550670 - 43550534
Alignment:
Q  17 gagaagagagaggtcaagagtgtcagatatggaaggatataagagagaactatgataagtgagtgtcatctaaaagactgagactttgactacgtgagtg 116  Q
    ||||||| ||||| | ||| ||| ||||||||||||| | |||| |||| | |||||| | ||||| |  | ||||||||||||| |||| |  ||||||    
T  43550670 gagaagatagaggccgagattgtgagatatggaaggagaaaagaaagaaatgtgataaataagtgttaattgaaagactgagactctgac-atttgagtg 43550572  T
Q  117 aaatgatttaggattttggtttctatttgtataaaagg 154  Q
    |||||||||||| ||| ||||||||||| |||| ||||    
T  43550571 aaatgatttagggtttgggtttctatttatatagaagg 43550534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 60 - 120
Target Start/End: Original strand, 29292573 - 29292633
Alignment:
Q  60 agagaactatgataagtgagtgtcatctaaaagactgagactttgactacgtgagtgaaat 120  Q
    ||||| ||||||||||||| ||||||||||||||| |||||| |||||| || ||||||||    
T  29292573 agagagctatgataagtgattgtcatctaaaagaccgagactctgactatgttagtgaaat 29292633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 202 - 261
Target Start/End: Complemental strand, 3227014 - 3226955
Alignment:
Q  202 gggtgggtacctatattcccgttatccatcctatacctgtgttttgaaatcgaggaaaac 261  Q
    ||||||||||||||||||| |||| || ||| ||||| |||||||||||||| |||||||    
T  3227014 gggtgggtacctatattcctgttacccgtcccatacccgtgttttgaaatcggggaaaac 3226955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 174 - 261
Target Start/End: Original strand, 7780004 - 7780092
Alignment:
Q  174 catttgggacgggtttggatat-gaatttgggtgggtacctatattcccgttatccatcctatacctgtgttttgaaatcgaggaaaac 261  Q
    |||||||||||||||||| ||| |  |  |||||||||||||||| ||| |||||| ||| ||||| ||||||||| |||| |||||||    
T  7780004 catttgggacgggtttgggtataggttcggggtgggtacctatatacccattatccgtcccatacccgtgttttgagatcggggaaaac 7780092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 174 - 261
Target Start/End: Original strand, 12980373 - 12980461
Alignment:
Q  174 catttgggacgggtttggatatgaatttggg-tgggtacctatattcccgttatccatcctatacctgtgttttgaaatcgaggaaaac 261  Q
    |||||||||||||||||| ||||  || ||| ||||||| ||||| ||| ||| || ||| ||||| |||||||||||||| |||||||    
T  12980373 catttgggacgggtttgggtatgggttcggggtgggtacttatatacccattacccgtcccatacccgtgttttgaaatcggggaaaac 12980461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 174 - 270
Target Start/End: Original strand, 16811726 - 16811822
Alignment:
Q  174 catttgggacgggtttggatatgaatttgggtgggtacctatattcccgttatccatcctatacctgtgttttgaaatcgaggaaaactcaaactca 270  Q
    |||||||||||| ||||| ||||  || ||||||||| |||||| ||| |||||| ||  ||||| ||||||||| |||| ||||||  ||||||||    
T  16811726 catttgggacggctttgggtatgggttcgggtgggtatctatatacccattatccgtctcatacccgtgttttgagatcggggaaaatccaaactca 16811822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 174 - 261
Target Start/End: Original strand, 16866165 - 16866253
Alignment:
Q  174 catttgggacgggtttggatatgaatttggg-tgggtacctatattcccgttatccatcctatacctgtgttttgaaatcgaggaaaac 261  Q
    |||||||||||||||||| ||||  || ||| ||||||||||||| |||||||  | ||| ||||| ||||||||| |||| |||||||    
T  16866165 catttgggacgggtttgggtatgggttcggggtgggtacctatatacccgttactcgtcccatacccgtgttttgagatcggggaaaac 16866253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 174 - 261
Target Start/End: Complemental strand, 27850423 - 27850335
Alignment:
Q  174 catttgggacgggtttggatatgaatttggg-tgggtacctatattcccgttatccatcctatacctgtgttttgaaatcgaggaaaac 261  Q
    |||| ||||||||||||| ||||  || ||| ||||||||||||  ||||||| || ||| ||||| |||||||||||||| |||||||    
T  27850423 cattcgggacgggtttgggtatgggttcgggatgggtacctatacacccgttacccgtcccatacccgtgttttgaaatcggggaaaac 27850335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 174 - 261
Target Start/End: Original strand, 35074466 - 35074554
Alignment:
Q  174 catttgggacgggtttggatatgaatttgggt-gggtacctatattcccgttatccatcctatacctgtgttttgaaatcgaggaaaac 261  Q
    |||||||||||||||||| ||||  || |||| |||||||||||| ||||||| || ||| ||||| ||||||| | |||| |||||||    
T  35074466 catttgggacgggtttgggtatgggttcgggttgggtacctatatacccgttacccgtcccatacccgtgttttaagatcggggaaaac 35074554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 18 - 65
Target Start/End: Original strand, 8265667 - 8265714
Alignment:
Q  18 agaagagagaggtcaagagtgtcagatatggaaggatataagagagaa 65  Q
    |||||||||||||| ||||||| | ||||||||||| |||||||||||    
T  8265667 agaagagagaggtcgagagtgtgacatatggaaggagataagagagaa 8265714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 202 - 261
Target Start/End: Original strand, 10072491 - 10072550
Alignment:
Q  202 gggtgggtacctatattcccgttatccatcctatacctgtgttttgaaatcgaggaaaac 261  Q
    |||||||||||||||| ||||||| || | | ||||| |||||||||||||| |||||||    
T  10072491 gggtgggtacctatatacccgttacccgttccatacccgtgttttgaaatcggggaaaac 10072550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 174 - 264
Target Start/End: Original strand, 30650627 - 30650718
Alignment:
Q  174 catttgggacgggtttggatatgaatttggg-tgggtacctatattcccgttatccatcctatacctgtgttttgaaatcgaggaaaactca 264  Q
    |||||||||||| ||||| ||||  || ||| ||||||||||||| ||||||| || ||| ||||| ||||||||| || | ||||||||||    
T  30650627 catttgggacggatttgggtatgggttcggggtgggtacctatatacccgttacccgtcccatacccgtgttttgagattggggaaaactca 30650718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 202 - 261
Target Start/End: Complemental strand, 39456083 - 39456024
Alignment:
Q  202 gggtgggtacctatattcccgttatccatcctatacctgtgttttgaaatcgaggaaaac 261  Q
    |||||||||||||||| ||||||| || ||| |||||  ||||||||||||| |||||||    
T  39456083 gggtgggtacctatatacccgttacccgtcccatacccatgttttgaaatcggggaaaac 39456024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 202 - 261
Target Start/End: Original strand, 41103681 - 41103740
Alignment:
Q  202 gggtgggtacctatattcccgttatccatcctatacctgtgttttgaaatcgaggaaaac 261  Q
    |||||||||| ||||| ||||||| || ||| ||||| |||||||||||||| |||||||    
T  41103681 gggtgggtacttatatacccgttaaccgtcccatacccgtgttttgaaatcggggaaaac 41103740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 174 - 271
Target Start/End: Complemental strand, 18125325 - 18125227
Alignment:
Q  174 catttgggacgggtttggatatgaatttggg-tgggtacctatattcccgttatccatcctatacctgtgttttgaaatcgaggaaaactcaaactcat 271  Q
    |||||||||||||||||| ||||  || ||| ||||||||||||| ||||||| || ||| ||||| |||||| || |||| | ||||| || ||||||    
T  18125325 catttgggacgggtttgggtatgcgttcggggtgggtacctatatacccgttacccgtcccatacccgtgtttcgagatcgggaaaaacccatactcat 18125227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 174 - 271
Target Start/End: Original strand, 21702655 - 21702753
Alignment:
Q  174 catttgggacgggtttggatatgaatttggg-tgggtacctatattcccgttatccatcctatacctgtgttttgaaatcgaggaaaactcaaactcat 271  Q
    ||||||||||||||| || ||||  || ||| ||||||||||||| ||||||| || ||| ||||| |||||| || |||| ||||||| || ||||||    
T  21702655 catttgggacgggttggggtatgggttcggggtgggtacctatatacccgttacccgtcccatacccgtgtttcgagatcggggaaaacccatactcat 21702753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 202 - 252
Target Start/End: Original strand, 24425405 - 24425455
Alignment:
Q  202 gggtgggtacctatattcccgttatccatcctatacctgtgttttgaaatc 252  Q
    |||||||||||||||| ||||||| || ||| ||||| |||||||||||||    
T  24425405 gggtgggtacctatatacccgttacccgtcccatacccgtgttttgaaatc 24425455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 213 - 271
Target Start/End: Original strand, 39317031 - 39317089
Alignment:
Q  213 tatattcccgttatccatcctatacctgtgttttgaaatcgaggaaaactcaaactcat 271  Q
    ||||| |||| || || ||| ||||| ||||||||||||||||||||||||| ||||||    
T  39317031 tatatacccgctacccgtcccatacccgtgttttgaaatcgaggaaaactcatactcat 39317089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 267
Target Start/End: Original strand, 26622976 - 26623041
Alignment:
Q  202 gggtgggtacctatattcccgttatccatcctatacctgtgttttgaaatcgaggaaaactcaaac 267  Q
    |||||||||| ||||| ||| ||| |||||| ||||| |||||||||||||  ||||||| |||||    
T  26622976 gggtgggtacttatatacccattacccatcccatacccgtgttttgaaatcagggaaaacccaaac 26623041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 174 - 261
Target Start/End: Complemental strand, 25980014 - 25979926
Alignment:
Q  174 catttgggacgggtttggatatgaatttggg-tgggtacctatattcccgttatccatcctatacctgtgttttgaaatcgaggaaaac 261  Q
    ||||||| | || ||||| ||||| |||||| ||||||| |||||  |||||| || ||  |||||||||||||||||||| |||||||    
T  25980014 catttggaaaggatttgggtatgagtttggggtgggtacatatatatccgttacccgtctcatacctgtgttttgaaatcggggaaaac 25979926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 174 - 261
Target Start/End: Original strand, 38152883 - 38152971
Alignment:
Q  174 catttgggacgggtttggatatgaatttggg-tgggtacctatattcccgttatccatcctatacctgtgttttgaaatcgaggaaaac 261  Q
    |||||||||||||||| | ||||  || ||| |||||||||||||  ||||||||| | | |||||  ||||||||||||| |||||||    
T  38152883 catttgggacgggtttaggtatgggttcggggtgggtacctatatagccgttatccgttccatacccatgttttgaaatcggggaaaac 38152971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 174 - 253
Target Start/End: Complemental strand, 45708962 - 45708882
Alignment:
Q  174 catttgggacgggtttggatatgaatttggg-tgggtacctatattcccgttatccatcctatacctgtgttttgaaatcg 253  Q
    ||||| |||||||||| | ||||| || ||| ||||||||||||| ||||||| || ||| ||||| ||||||||| ||||    
T  45708962 cattttggacgggtttaggtatgagttcggggtgggtacctatatacccgttacccgtccaatacccgtgttttgagatcg 45708882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 99; Significance: 8e-49; HSPs: 25)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 17 - 253
Target Start/End: Original strand, 28345324 - 28345562
Alignment:
Q  17 gagaagagagaggtcaagagtgtcagatatggaaggatataagagagaactatgataagtgagtgtcatctaaaagactgagactttgactacgtgagtg 116  Q
    ||||||||||||||||| ||||| ||||||||||||| ||||||||||||||||||||||||||||||||| ||| ||||||||| |||||  |||||||    
T  28345324 gagaagagagaggtcaaaagtgtgagatatggaaggagataagagagaactatgataagtgagtgtcatctgaaatactgagactatgactgtgtgagtg 28345423  T
Q  117 aaatgatttaggattttggtttctatttgtataaaaggtatgataaattgattttct-catttgggacgggtttggatatgaatt-tgggtgggtaccta 214  Q
    ||||||||||| |||| ||||||||||| |||||||||  | ||| ||| ||||||| ||||  ||||  |||||| ||||  ||  |||||||| ||||    
T  28345424 aaatgatttagaatttcggtttctatttatataaaaggggtaatatatttattttctacattcaggacaagtttgggtatgggttcggggtgggtgccta 28345523  T
Q  215 tattcccgttatccatcctatacctgtgttttgaaatcg 253  Q
    ||| | ||||| ||||||| |||| |||||||| |||||    
T  28345524 tatcctcgttacccatcctgtacccgtgttttggaatcg 28345562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 23 - 271
Target Start/End: Original strand, 29918446 - 29918696
Alignment:
Q  23 agagaggtcaagagtgtcagatatggaaggatataagagagaactatgataagtgagtgtcatctaaaagactgagactttgactacgtgagtgaaatga 122  Q
    ||||||||| ||||||| ||||||||||||  | |||| ||||||||||||| | |||||||||| ||||| ||||||| | |||  |||||||||||||    
T  29918446 agagaggtcgagagtgtaagatatggaaggcgaaaagatagaactatgataactaagtgtcatctgaaagattgagactctaactgtgtgagtgaaatga 29918545  T
Q  123 tttaggattttggtttctatttgtataaaaggtatgataaattgattttct-catttgggacgggtttggatatgaatt-tgggtgggtacctatattcc 220  Q
    |||||| |||  |||||||||| ||||||||   | ||||||||||||| | |||||||||||||||||  ||||  ||  |||||||||| |||||       
T  29918546 tttagggtttgagtttctatttatataaaagaggtaataaattgattttttacatttgggacgggtttgtgtatggtttcggggtgggtacatatatctt 29918645  T
Q  221 cgttatccatcctatacctgtgttttgaaatcgaggaaaactcaaactcat 271  Q
     |||| || | || ||| ||||||||||||||| | |||||||||||||||    
T  29918646 tgttacccgttctgtacatgtgttttgaaatcgggaaaaactcaaactcat 29918696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 17 - 171
Target Start/End: Original strand, 36274876 - 36275029
Alignment:
Q  17 gagaagagagaggtcaagagtgtcagatatggaaggatataagagagaactatgataagtgagtgtcatctaaaagactgagactttgactacgtgagtg 116  Q
    ||||||||||||  | ||||||| ||||||||||||| | ||| ||| ||||||||||||||||||||||| |||||| ||||||||||||  |||||||    
T  36274876 gagaagagagagacctagagtgtgagatatggaaggagaaaagggaggactatgataagtgagtgtcatctgaaagaccgagactttgactgtgtgagtg 36274975  T
Q  117 aaatgatttaggattttggtttctatttgtataaaaggtatgataaattgatttt 171  Q
    ||||||||||||  || ||||||||||| ||||||||| ||  ||||||||||||    
T  36274976 aaatgatttagg-gttgggtttctatttatataaaagggatagtaaattgatttt 36275029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 17 - 268
Target Start/End: Complemental strand, 8545604 - 8545351
Alignment:
Q  17 gagaagagagaggtcaagagtgtcagatatggaaggatataagagagaactatgataagtgagtgtcatctaaaagactgagactttgactacgtgagtg 116  Q
    ||||| ||||||||  ||| ||| ||||||||||||| | ||||||||| ||||||||||||||||||| | |||||| |||||| || |||  ||||||    
T  8545604 gagaaaagagaggttgagaatgtgagatatggaaggagaaaagagagaattatgataagtgagtgtcatttgaaagaccgagactctggctatttgagtg 8545505  T
Q  117 aaatgatttaggattttggtttctatttgtataaaaggtatgataaattgattttct-catttgggacgggtttggatatgaatt-tgggtgggtaccta 214  Q
    |||||||||||| ||| | ||||| ||| |||||||||  |  |||||||||||||| ||||||||||| |||||  ||||  ||  ||||||||| |||    
T  8545504 aaatgatttagggtttggatttctgtttatataaaaggagttgtaaattgattttctacatttgggacgagtttgagtatgggttcggggtgggtatcta 8545405  T
Q  215 tattcccgttatccatcctatacctgtgttttgaaatcgaggaaaactcaaact 268  Q
    ||| |||||||  | | | ||||| ||||||||||||||  |||||| ||||||    
T  8545404 tatccccgttactcgttccatacccgtgttttgaaatcggagaaaacccaaact 8545351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 17 - 267
Target Start/End: Original strand, 5700189 - 5700441
Alignment:
Q  17 gagaagagagaggtcaagagtgtcagatatggaaggatataagagagaactatgataagtgagtgtcatctaaaagactgagactttgactacgtgagtg 116  Q
    |||||||||||||   | ||||| ||||||| ||||| ||||||||||| |||||||||||| |||||||||||||||| ||||| |||||| | |||||    
T  5700189 gagaagagagaggcagatagtgtgagatatgaaaggagataagagagaattatgataagtgactgtcatctaaaagactaagactctgactatgggagtg 5700288  T
Q  117 aaatgatttaggattttggtttctatttgtataaaaggtatgataaattgattttct-catttgggacgggtttggatatgaatttg-ggtgggtaccta 214  Q
    |||||||||||  ||| |||||| |||| |||||||||  | | ||||| ||||| | |||| |||| || ||||| ||||  || | |||||||| |||    
T  5700289 aaatgatttagagtttcggtttcaatttatataaaaggggtaaaaaattaattttatacattcgggatggatttgggtatgggttcgaggtgggtatcta 5700388  T
Q  215 tattcccgttatccatcctatacctgtgttttgaaatcgaggaaaactcaaac 267  Q
    ||| ||||||| |  ||  |||||||||||||||||||| | |||||| ||||    
T  5700389 tatccccgttaccagtctcatacctgtgttttgaaatcgggaaaaacttaaac 5700441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 17 - 259
Target Start/End: Original strand, 30903877 - 30904123
Alignment:
Q  17 gagaagagagaggtcaagagtgtcagatatggaaggatataagagagaactatgataagtgagtgtcatct-aaaagactgagacttt-gactacgtgag 114  Q
    ||||||||||||| ||| ||||| ||||||  | ||| | |||||| ||||||||||| ||| |||||| | |||| | ||||||||| ||||  |||||    
T  30903877 gagaagagagaggccaatagtgtaagatatatagggagaaaagagaaaactatgataaatgaatgtcatttgaaaaaattgagacttttgactgtgtgag 30903976  T
Q  115 tgaaatgatttaggattttggtttctatttgtataaaaggtatgataaattgattttct-catttgggacgggtttggatatgaat-ttgggtgggtacc 212  Q
    |||||||||||| | ||||||||||||||| ||||||| || | ||||||||||||||| |||| ||||| | ||||| ||||  | | ||||||||||     
T  30903977 tgaaatgatttaaggttttggtttctatttatataaaatgtgtaataaattgattttctacattcgggactgatttgggtatgggtatggggtgggtact 30904076  T
Q  213 tatattcccgttatccatcctatacctgtgttttgaaatcgaggaaa 259  Q
    |||||  || ||| || ||   |||| ||||||||||||||||||||    
T  30904077 tatatctccattacccgtctcgtacccgtgttttgaaatcgaggaaa 30904123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 17 - 173
Target Start/End: Complemental strand, 6388760 - 6388604
Alignment:
Q  17 gagaagagagaggtcaagagtgtcagatatggaaggatataagagagaactatgataagtgagtgtcatctaaaagactgagactttgactacgtgagtg 116  Q
    ||||||||||||| | ||||||| ||  ||||||||| | |  |||||||||||||||||||||||||| | |||| |||||||| | | |  |||||||    
T  6388760 gagaagagagaggccgagagtgtgaggcatggaaggagaaagaagagaactatgataagtgagtgtcattttaaagtctgagactctaattgtgtgagtg 6388661  T
Q  117 aaatgatttaggattttggtttctatttgtataaaaggtatgataaattgattttct 173  Q
    |||||||||||| ||| ||||||| ||| ||||||| |  | |||||||||||||||    
T  6388660 aaatgatttagggtttgggtttctgtttatataaaatgggtaataaattgattttct 6388604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 17 - 266
Target Start/End: Complemental strand, 17084364 - 17084111
Alignment:
Q  17 gagaagagagaggtcaagagtgtcagatatggaaggatataagagagaactatgataagtgagtgtcatctaaaagactgagactttgactacgtgagtg 116  Q
    ||||||| | ||||| ||||||| | ||||||||||| | |||||| ||||||||||||||| |||||| | ||||||||| ||| ||| |  ||||| |    
T  17084364 gagaagaaaaaggtcgagagtgtgaaatatggaaggagaaaagagataactatgataagtgattgtcatatgaaagactgaaactctgattgtgtgaggg 17084265  T
Q  117 aaatgatttaggattttggtttctatttgtataaaaggtatgataaattgattttct---catttgggacgggtttggatatgaatt-tgggtgggtacc 212  Q
     ||| |||||||  || ||||| ||||| ||||||| | |  ||||||||||||| |   |||| | || |||||||||||||| ||  ||||||||| |    
T  17084264 gaataatttagggcttgggtttatatttatataaaaaggacaataaattgattttttttacattcgtgatgggtttggatatgagttcggggtgggtatc 17084165  T
Q  213 tatattcccgttatccatcctatacctgtgttttgaaatcgaggaaaactcaaa 266  Q
    ||||| ||||||| || ||   |||| ||||||| ||||||  |||||| ||||    
T  17084164 tatatccccgttacccgtctcgtacccgtgttttaaaatcggagaaaacccaaa 17084111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 146 - 271
Target Start/End: Original strand, 14155494 - 14155621
Alignment:
Q  146 tataaaaggtatgataaattgattttct-catttgggacgggtttggatatgaatttggg-tgggtacctatattcccgttatccatcctatacctgtgt 243  Q
    |||||||||  | ||||||||||||||| ||||| ||| |||||||| |||||||||||| ||| ||  ||||| | ||||| ||||| |||||| ||||    
T  14155494 tataaaaggggtaataaattgattttctacatttaggatgggtttgggtatgaatttggggtggataaatatatcctcgttacccatcttatacccgtgt 14155593  T
Q  244 tttgaaatcgaggaaaactcaaactcat 271  Q
    |||||||||| | ||||| |||||||||    
T  14155594 tttgaaatcgggaaaaacccaaactcat 14155621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 177 - 267
Target Start/End: Original strand, 17469249 - 17469340
Alignment:
Q  177 ttgggacgggtttggatatgaatttggg-tgggtacctatattcccgttatccatcctatacctgtgttttgaaatcgaggaaaactcaaac 267  Q
    ||||||||||||||| ||||  |||||| ||||||||||||| ||||||| || ||| ||||| |||||||||||||| ||||||| |||||    
T  17469249 ttgggacgggtttgggtatgggtttggggtgggtacctatatacccgttacccgtcccatacccgtgttttgaaatcggggaaaacccaaac 17469340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 17 - 82
Target Start/End: Complemental strand, 9476259 - 9476194
Alignment:
Q  17 gagaagagagaggtcaagagtgtcagatatggaaggatataagagagaactatgataagtgagtgt 82  Q
    ||||||||||||||| ||||||| |||| |||||| | ||||||||||||||||||||||| ||||    
T  9476259 gagaagagagaggtcgagagtgtgagatgtggaagtagataagagagaactatgataagtgtgtgt 9476194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 159 - 267
Target Start/End: Original strand, 14186295 - 14186405
Alignment:
Q  159 ataaattgattttct-catttgggacgggtttggatatgaattt-gggtgggtacctatattcccgttatccatcctatacctgtgttttgaaatcgagg 256  Q
    ||||||| ||||||| ||||  |||||||||||| ||||  ||  ||||| ||||||||||  |||||| |||||| ||||| ||||||||||||||||     
T  14186295 ataaattaattttctacattcaggacgggtttgggtatgggttcagggtgagtacctatatatccgttacccatcccatacccgtgttttgaaatcgaga 14186394  T
Q  257 aaaactcaaac 267  Q
    |||||||||||    
T  14186395 aaaactcaaac 14186405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 17 - 99
Target Start/End: Complemental strand, 29416433 - 29416351
Alignment:
Q  17 gagaagagagaggtcaagagtgtcagatatggaaggatataagagagaactatgataagtgagtgtcatctaaaagactgaga 99  Q
    |||||||||| || ||| ||||| ||| ||| ||||| | |||||| |||||||||||||||||||||||| |||| ||||||    
T  29416433 gagaagagaggggccaaaagtgtgagacatgaaaggagaaaagagaaaactatgataagtgagtgtcatctgaaagtctgaga 29416351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 36 - 152
Target Start/End: Original strand, 5793437 - 5793553
Alignment:
Q  36 gtgtcagatatggaaggatataagagagaactatgataagtgagtgtcatctaaaagactgagactttgactacgtgagtgaaatgatttaggattttgg 135  Q
    |||| |||| |||||||| | |||||||||||   | ||||||||||| ||  ||||||| ||||||||  |  ||||||||||||||||||| |||  |    
T  5793437 gtgtgagatgtggaaggagaaaagagagaacttaaagaagtgagtgtcgtcagaaagacttagactttggttgtgtgagtgaaatgatttagggtttgag 5793536  T
Q  136 tttctatttgtataaaa 152  Q
    ||||||||| |||||||    
T  5793537 tttctatttatataaaa 5793553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 174 - 264
Target Start/End: Original strand, 45236056 - 45236147
Alignment:
Q  174 catttgggacgggtttggatatgaatttggg-tgggtacctatattcccgttatccatcctatacctgtgttttgaaatcgaggaaaactca 264  Q
    |||||||||||||| ||||||||  || ||| ||||||||||||| ||| ||| || ||| ||||| |||||||||||||  ||||||||||    
T  45236056 catttgggacgggtatggatatgggttcggggtgggtacctatatacccattacccgtcccatacccgtgttttgaaatcagggaaaactca 45236147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 174 - 271
Target Start/End: Complemental strand, 37961059 - 37960961
Alignment:
Q  174 catttgggacgggtttggatatgaatt-tgggtgggtacctatattcccgttatccatcctatacctgtgttttgaaatcgaggaaaactcaaactcat 271  Q
    |||||||||||||||||| ||||| ||  ||||| |||||||||| || |||| |  ||| ||||| ||||||| |||||| ||||||| |||||||||    
T  37961059 catttgggacgggtttgggtatgagttcggggtgtgtacctatatacctgttacctgtcccatacccgtgtttttaaatcggggaaaacccaaactcat 37960961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 174 - 261
Target Start/End: Original strand, 32303052 - 32303140
Alignment:
Q  174 catttgggacgggtttggatatgaatttggg-tgggtacctatattcccgttatccatcctatacctgtgttttgaaatcgaggaaaac 261  Q
    |||||||||||||||||| ||||  || ||| ||||||||||||| ||||||| || ||| ||||| |||||| || |||| |||||||    
T  32303052 catttgggacgggtttgggtatgggttcggggtgggtacctatatacccgttacccgtcccatacccgtgtttcgagatcggggaaaac 32303140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 205 - 261
Target Start/End: Complemental strand, 40248436 - 40248380
Alignment:
Q  205 tgggtacctatattcccgttatccatcctatacctgtgttttgaaatcgaggaaaac 261  Q
    ||||||||||||| |||||||||| ||  ||||| |||||||||||||| |||||||    
T  40248436 tgggtacctatatacccgttatccgtctcatacccgtgttttgaaatcggggaaaac 40248380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 202 - 261
Target Start/End: Original strand, 27932433 - 27932492
Alignment:
Q  202 gggtgggtacctatattcccgttatccatcctatacctgtgttttgaaatcgaggaaaac 261  Q
    |||||||||||||||| |||||||  | ||| ||||| |||||||||||||| |||||||    
T  27932433 gggtgggtacctatatacccgttactcgtcccatacccgtgttttgaaatcggggaaaac 27932492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 202 - 260
Target Start/End: Original strand, 17220732 - 17220790
Alignment:
Q  202 gggtgggtacctatattcccgttatccatcctatacctgtgttttgaaatcgaggaaaa 260  Q
    ||||||||||||||||  || | |||||||| ||||| |||||||||||||| ||||||    
T  17220732 gggtgggtacctatataaccatcatccatcccatacccgtgttttgaaatcggggaaaa 17220790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 202 - 264
Target Start/End: Complemental strand, 24870092 - 24870030
Alignment:
Q  202 gggtgggtacctatattcccgttatccatcctatacctgtgttttgaaatcgaggaaaactca 264  Q
    |||||||||||||||| ||||||| || ||  ||||| ||||||| |||||| ||||||||||    
T  24870092 gggtgggtacctatatacccgttacccgtcacatacccgtgttttaaaatcggggaaaactca 24870030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 171
Target Start/End: Original strand, 17108302 - 17108363
Alignment:
Q  110 gtgagtgaaatgatttaggattttggtttctatttgtataaaaggtatgataaattgatttt 171  Q
    ||||||||||| ||||||| |||  |||||||||| ||||||| | || |||||||||||||    
T  17108302 gtgagtgaaattatttagggtttaagtttctatttatataaaatggataataaattgatttt 17108363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 267
Target Start/End: Original strand, 20399612 - 20399677
Alignment:
Q  202 gggtgggtacctatattcccgttatccatcctatacctgtgttttgaaatcgaggaaaactcaaac 267  Q
    ||||||||| |||||| ||||||| || ||| ||||| ||||||||||||||  |||||| |||||    
T  20399612 gggtgggtatctatatacccgttacccgtcccatacccgtgttttgaaatcggagaaaacccaaac 20399677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 205 - 261
Target Start/End: Complemental strand, 4230795 - 4230739
Alignment:
Q  205 tgggtacctatattcccgttatccatcctatacctgtgttttgaaatcgaggaaaac 261  Q
    ||||||||||||| |||||||  | ||| ||||||||||||||| |||| |||||||    
T  4230795 tgggtacctatatacccgttactcgtcccatacctgtgttttgagatcggggaaaac 4230739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 174 - 253
Target Start/End: Complemental strand, 39445673 - 39445593
Alignment:
Q  174 catttgggacgggtttggatatgaatttggg-tgggtacctatattcccgttatccatcctatacctgtgttttgaaatcg 253  Q
    |||||||||||||| ||| ||||| || ||| ||||||||||||  ||||||| |  ||| ||||| ||||||||||||||    
T  39445673 catttgggacgggtatgggtatgagttcggggtgggtacctataaacccgttacctgtcccatacccgtgttttgaaatcg 39445593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 88; Significance: 3e-42; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 17 - 271
Target Start/End: Complemental strand, 40187912 - 40187657
Alignment:
Q  17 gagaagagagaggtcaagagtgtcagatatggaaggatataagagagaactatgataagtgagtgtcatctaaaagactgagactttgactacgtgagtg 116  Q
    ||||||||||||  | ||||||| |||||||||| || ||||||||||||||||||||||||||||||||| ||||| ||| ||| |||||| ||||||     
T  40187912 gagaagagagagaccgagagtgtgagatatggaatgagataagagagaactatgataagtgagtgtcatctgaaagattgaaactctgactatgtgagta 40187813  T
Q  117 aaatgatttaggattttggtttctatttgtataaaaggtatgataaattgattttct-catttgggacgggtttggatatgaatttgggtgggtacctat 215  Q
    |||||||||||||||||  || |||||| ||||||||   | ||||||| |||||||  ||| |||||| |||||| ||||| ||||||||  |||||||    
T  40187812 aaatgatttaggattttcattactatttatataaaagaggtaataaattaattttctatattcgggacgagtttgggtatgagtttgggtgaatacctat 40187713  T
Q  216 attcccgttatccatcctatacctgtgttttgaaatcgaggaaaactcaaactcat 271  Q
    ||  |||||| || ||    ||| |||||||||||| | ||||||| |||||||||    
T  40187712 atctccgttacccgtctcgcacccgtgttttgaaattggggaaaacccaaactcat 40187657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 17 - 253
Target Start/End: Original strand, 29664804 - 29665042
Alignment:
Q  17 gagaagagagaggtcaagagtgtcagatatggaaggatataagagagaactatgataagtgagtgtcatctaaaagactgagactttgactacgtgagtg 116  Q
    ||||||||||||| ||||||||| |||||| ||| || | ||||||||| ||||||||||||||||||||| ||| ||||||||| |||| | || | ||    
T  29664804 gagaagagagaggccaagagtgttagatattgaaagagaaaagagagaattatgataagtgagtgtcatctgaaatactgagactctgacaatgtaaatg 29664903  T
Q  117 aaatgatttaggattttggtttctatttgtataaaaggtatgataaattgattttct-catttgggacgggtttggatatgaatttg-ggtgggtaccta 214  Q
    |||||||||||  |||  ||||||||||  ||||||||  |  |||||||||||| | |||| ||||||||||||| ||||| || |  |||||||||||    
T  29664904 aaatgatttagagtttgagtttctatttaaataaaaggggtagtaaattgattttgtacattcgggacgggtttgggtatgagttcgaagtgggtaccta 29665003  T
Q  215 tattcccgttatccatcctatacctgtgttttgaaatcg 253  Q
    ||| ||||||| ||||| | |||| ||||||||||||||    
T  29665004 tatccccgttacccatcatgtacccgtgttttgaaatcg 29665042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 17 - 189
Target Start/End: Complemental strand, 7350663 - 7350490
Alignment:
Q  17 gagaagagagaggtcaagagtgtcagatatggaaggatataagagagaactatgataagtgagtgtcatctaaaagactgagactttgactacgtgagtg 116  Q
    |||||||||| |||| ||| ||| ||||||||||||| ||||||||||||||||||||||||| ||| ||| ||||| || |||| | |||| ||||||     
T  7350663 gagaagagaggggtcgagaatgtgagatatggaaggagataagagagaactatgataagtgagcgtcgtctcaaagattgcgactctaactatgtgagta 7350564  T
Q  117 aaatgatttaggattttggtttctatttgtataaaaggtatgataaattgattttct-catttgggacgggttt 189  Q
    |||||||||||| ||| | || |||||| ||||||||  || ||||||| ||||||| |||||| |||||||||    
T  7350563 aaatgatttagggtttcgattactatttatataaaagcgataataaattaattttctacatttgagacgggttt 7350490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 33 - 271
Target Start/End: Original strand, 38972771 - 38973011
Alignment:
Q  33 agagtgtcagatatggaaggatataagagagaactatgataagtgagtgtcatctaaaagactgagactttgactacgtgagtgaaatgatttaggattt 132  Q
    ||||||| | ||||| ||||| ||||||||||||||||||||||||||||||| | ||||| | ||||| | ||   |||| | |||||||||||| |||    
T  38972771 agagtgtgatatatgaaaggagataagagagaactatgataagtgagtgtcatatgaaagatttagactctaacagtgtgaatcaaatgatttagggttt 38972870  T
Q  133 tggtttctatttgtataaaaggtatgataaattgattttct-catttgggacgggtttggatatgaatt-tgggtgggtacctatattcccgttatccat 230  Q
      ||||| |||| |||||||||  | ||||||||||||| | |||||| || |||||||  ||||  ||  |||||||||||||||||||||||| | ||    
T  38972871 cagtttcgatttatataaaagggttaataaattgattttatgcatttgagatgggtttgagtatgggttcggggtgggtacctatattcccgttacctat 38972970  T
Q  231 cctatacctgtgttttgaaatcgaggaaaactcaaactcat 271  Q
    || |||||  ||||||||||||| | ||||| |||||||||    
T  38972971 cccatacccatgttttgaaatcgggaaaaacccaaactcat 38973011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 17 - 196
Target Start/End: Original strand, 17153002 - 17153182
Alignment:
Q  17 gagaagagagaggtcaagagtgtcagatatggaaggatataagagagaactatgataagtgagtgtcatctaaaagactgagactttgactacgtgagtg 116  Q
    ||||||||||||| | ||||||| ||||||||||| | | || ||||||||||||||||||| | |||| | ||||||||||  | |||||  |||||||    
T  17153002 gagaagagagagggcgagagtgtgagatatggaagaagaaaatagagaactatgataagtgaatctcatttgaaagactgagtatctgactgtgtgagtg 17153101  T
Q  117 aaatgatttaggattttggtttctatttgtataaaaggtatgataaattgattttct-catttgggacgggtttggatatg 196  Q
    |||| ||||||| ||| | ||||||||| | || ||||  | ||||||||||||||| |||| ||||||||||||| ||||    
T  17153102 aaattatttaggttttggatttctatttatctagaaggggtaataaattgattttctacattcgggacgggtttgggtatg 17153182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 35 - 171
Target Start/End: Complemental strand, 457606 - 457474
Alignment:
Q  35 agtgtcagatatggaaggatataagagagaactatgataagtgagtgtcatctaaaagactgagactttgactacgtgagtgaaatgatttaggattttg 134  Q
    ||||| ||||||| ||||| |||||||||||| ||||||||||||| |||||| |||||   | |||    ||  || ||||||||||||||||||||||    
T  457606 agtgtgagatatgtaaggagataagagagaacgatgataagtgagtatcatctgaaagatcaatact----ctctgtaagtgaaatgatttaggattttg 457511  T
Q  135 gtttctatttgtataaaaggtatgataaattgatttt 171  Q
    |||||||||| |||||||||| | |||||||||||||    
T  457510 gtttctatttatataaaaggtgtaataaattgatttt 457474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 44 - 173
Target Start/End: Complemental strand, 18452114 - 18451985
Alignment:
Q  44 tatggaaggatataagagagaactatgataagtgagtgtcatctaaaagactgagactttgactacgtgagtgaaatgatttaggattttggtttctatt 143  Q
    |||||||||| | |||||||||| ||||||||||| | |||||| |||||| |||||||| |||  |||||||||||||| || ||||    ||||||||    
T  18452114 tatggaaggagaaaagagagaaccatgataagtgactatcatctgaaagaccgagactttaactgtgtgagtgaaatgatctaagattcgtatttctatt 18452015  T
Q  144 tgtataaaaggtatgataaattgattttct 173  Q
      ||||||||| || |||||||||||||||    
T  18452014 aatataaaagggataataaattgattttct 18451985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 20 - 267
Target Start/End: Original strand, 24207526 - 24207769
Alignment:
Q  20 aagagagaggtcaagagtgtcagatatggaaggatataagagagaactatgataagtgagtgtcatctaaaagactgagactttgactacgtgagtgaaa 119  Q
    |||||||||||  ||||||| |||||  |||||| | ||||||||||||| |||||| |||||||||| ||||||||||||| | | |  |||||||||     
T  24207526 aagagagaggttgagagtgtgagataatgaaggagaaaagagagaactattataagttagtgtcatctgaaagactgagactct-agt--gtgagtgaag 24207622  T
Q  120 tgatttaggattttggtttctatttgtataaaaggtatgataaattgattttct-catttgggacgggtttggatatgaatt-tgggtggg--tacctat 215  Q
    | ||||||| |||| |||| ||||| |||||||||  | ||||||| ||||||| ||||     ||||||||| ||||  ||  |||||||  ||| |||    
T  24207623 ttatttagggttttagtttttatttatataaaaggattaataaattaattttctacatt-----cgggtttgggtatggcttcagggtgggtatacttat 24207717  T
Q  216 attcccgttatccatcctatacctgtgttttgaaatcgaggaaaactcaaac 267  Q
    || || ||||| | | | |||||||||||||||||||| |||||||||||||    
T  24207718 atccctgttattcgttcgatacctgtgttttgaaatcggggaaaactcaaac 24207769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 77 - 271
Target Start/End: Complemental strand, 16311488 - 16311293
Alignment:
Q  77 gagtgtcatctaaaagactgagactttgactacgtgagtgaaatgatttaggattttggtttctatttgtataaaaggtatgataaattgattttc-tca 175  Q
    |||||||| || |||||||||||||  ||||  | |||| |||||||||||| ||| ||||||||||| ||||||||| || ||||||||||||||  ||    
T  16311488 gagtgtcaactgaaagactgagactgagactctgcgagtaaaatgatttagggttt-ggtttctatttatataaaagggataataaattgattttcaaca 16311390  T
Q  176 tttgggacgggtttggatatgaatt-tgggtgggtacctatattcccgttatccatcctatacctgtgttttgaaatcgaggaaaactcaaactcat 271  Q
    || | ||| |||||| |||||  ||  |||||||||||||||| || ||||||| ||   |||  ||||||||||||||   |||||||||||||||    
T  16311389 ttcgagacaggtttgaatatgggttcggggtgggtacctatatccctgttatccgtctcgtactcgtgttttgaaatcggaaaaaactcaaactcat 16311293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 41 - 267
Target Start/End: Complemental strand, 27900631 - 27900405
Alignment:
Q  41 agatatggaaggatataagagagaactatgataagtgagtgtcatctaaaagactgagactttgactacgtgagtgaaatgatttaggattttggtttct 140  Q
    ||||||| ||||| |||||||||||||||  |||||||||||||||| |||||||  || | ||| |  |||| |||||||||||||| |||  ||||||    
T  27900631 agatatgtaaggagataagagagaactatattaagtgagtgtcatctgaaagact--gattctgaatgtgtgactgaaatgatttagggtttcagtttct 27900534  T
Q  141 atttgtataaaaggtatgataaattgattttct-catttgggacgggtttggatatgaatttg-ggtgggtacctatattcccgttatccatcctatacc 238  Q
    |||| ||||||||     ||||||||||||| | |||| ||| ||| ||||| ||||  || | | ||||||||||||| | | ||| || ||| |||||    
T  27900533 atttatataaaagaggaaataaattgattttatacattcggggcggatttgggtatgggttcgagatgggtacctatatccacattacccgtcccatacc 27900434  T
Q  239 tgtgttttgaaatcgaggaaaactcaaac 267  Q
      ||||||||||||| | |||||||||||    
T  27900433 catgttttgaaatcgggaaaaactcaaac 27900405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 33 - 171
Target Start/End: Original strand, 35583966 - 35584103
Alignment:
Q  33 agagtgtcagatatggaaggatataagagagaactatgataagtgagtgtcatctaaaagactgagactttgactacgtgagtgaaatgatttaggattt 132  Q
    |||||||  |||||| ||||| | || |||||||  |||||| |||||| ||||| ||||||||||||| |||||  |||||  |||||||||||| |||    
T  35583966 agagtgtgggatatgaaaggagaaaacagagaacagtgataaatgagtgacatctgaaagactgagactctgactgtgtgagcaaaatgatttagggttt 35584065  T
Q  133 tggtttctatttgtataaaaggtatgataaattgatttt 171  Q
      |||||||||| |||||||||  | |||||||||||||    
T  35584066 gagtttctatttatataaaagg-gtaataaattgatttt 35584103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 110 - 197
Target Start/End: Original strand, 12457443 - 12457531
Alignment:
Q  110 gtgagtgaaatgatttaggattttggtttctatttgtataaaaggtatgataaattgattttct-catttgggacgggtttggatatga 197  Q
    ||||||||||||||||||  ||| ||||||||||| ||| |||||  | ||||||||||||||| |||| ||||||||||||| |||||    
T  12457443 gtgagtgaaatgatttagactttaggtttctatttatattaaaggggtaataaattgattttctacattcgggacgggtttgggtatga 12457531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 174 - 253
Target Start/End: Original strand, 15890198 - 15890277
Alignment:
Q  174 catttgggacgggtttggatatgaatttgggtgggtacctatattcccgttatccatcctatacctgtgttttgaaatcg 253  Q
    |||||||||||||| ||| ||||  || |||||||||||||||| ||||||| || ||| ||||| ||||||||||||||    
T  15890198 catttgggacgggtatgggtatgggttcgggtgggtacctatatacccgttacccgtcccatacccgtgttttgaaatcg 15890277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 174 - 271
Target Start/End: Original strand, 18207010 - 18207107
Alignment:
Q  174 catttgggacgggtttggatatgaatttgggtgggtacctatattcccgttatccatcctatacctgtgttttgaaatcgaggaaaactcaaactcat 271  Q
    |||| |||||||||||| |||||  || |||||||||||||||| || |||| |  ||| ||||  | |||||||||||||||||||| |||||||||    
T  18207010 cattcgggacgggtttgaatatgggttcgggtgggtacctatatacctgttacctgtcccatacacgagttttgaaatcgaggaaaacccaaactcat 18207107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 174 - 261
Target Start/End: Original strand, 4583110 - 4583198
Alignment:
Q  174 catttgggacgggtttggatatgaatttggg-tgggtacctatattcccgttatccatcctatacctgtgttttgaaatcgaggaaaac 261  Q
    |||||||||||||| ||| ||||  |||||| |||| |||||||| ||||||| || ||| ||||| |||||||||||||| |||||||    
T  4583110 catttgggacgggtatgggtatgggtttggggtgggaacctatatacccgttacccgtcccatacccgtgttttgaaatcggggaaaac 4583198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 174 - 261
Target Start/End: Original strand, 4920817 - 4920905
Alignment:
Q  174 catttgggacgggtttggatatgaatt-tgggtgggtacctatattcccgttatccatcctatacctgtgttttgaaatcgaggaaaac 261  Q
    |||||||||||||||||| ||||  ||  |||||| ||||||||| ||||||| || ||| ||||| ||||||||| |||| |||||||    
T  4920817 catttgggacgggtttgggtatgggttcggggtggatacctatatacccgttacccgtcccatacccgtgttttgagatcggggaaaac 4920905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 227 - 270
Target Start/End: Original strand, 3573248 - 3573291
Alignment:
Q  227 ccatcctatacctgtgttttgaaatcgaggaaaactcaaactca 270  Q
    |||||||||||| |||| ||||||||||||||||| ||||||||    
T  3573248 ccatcctatacccgtgtcttgaaatcgaggaaaacccaaactca 3573291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 174 - 264
Target Start/End: Complemental strand, 5908786 - 5908695
Alignment:
Q  174 catttgggacgggtttggatatgaattt-gggtgggtacctatattcccgttatccatcctatacctgtgttttgaaatcgaggaaaactca 264  Q
    |||||||||||||||||| ||||  ||| ||||| |||| ||||| ||||||| || ||| ||||| |||||| || |||| ||||||||||    
T  5908786 catttgggacgggtttgggtatgggtttggggtgtgtacatatatacccgttacccgtcccatacccgtgtttcgagatcggggaaaactca 5908695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 202 - 261
Target Start/End: Complemental strand, 20973565 - 20973506
Alignment:
Q  202 gggtgggtacctatattcccgttatccatcctatacctgtgttttgaaatcgaggaaaac 261  Q
    |||||||||||||||| ||||||| |||||| ||||| ||||||  |||||| |||||||    
T  20973565 gggtgggtacctatatacccgttacccatcccatacccgtgtttgaaaatcggggaaaac 20973506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 202 - 260
Target Start/End: Complemental strand, 33728070 - 33728012
Alignment:
Q  202 gggtgggtacctatattcccgttatccatcctatacctgtgttttgaaatcgaggaaaa 260  Q
    |||||||||||||||| ||||||| || ||| ||||| ||||||||| |||| ||||||    
T  33728070 gggtgggtacctatatacccgttacccgtcccatacccgtgttttgagatcggggaaaa 33728012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 154
Target Start/End: Complemental strand, 16366664 - 16366567
Alignment:
Q  58 agagagaactatgataagtgagtgtcatctaaaagactgagactttgactacgtgagtgaaatgatttaggattttg-gtttctatttgtataaaagg 154  Q
    |||||||||| ||||||||||||||||||| | || |||||| | ||| |  ||||  ||||||||||| | ||||| |||||| ||| |||||||||    
T  16366664 agagagaactctgataagtgagtgtcatctgataggctgagattctgattgtgtgacggaaatgatttatggttttgagtttctttttatataaaagg 16366567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 246
Target Start/End: Complemental strand, 35194087 - 35194014
Alignment:
Q  174 catttgggacgggtttggatatgaatttggg-tgggtacctatattcccgttatccatcctatacctgtgtttt 246  Q
    |||| ||||||||||||  ||||| |||||| ||||||||||||| ||||||| || ||| ||||| |||||||    
T  35194087 cattcgggacgggtttgagtatgagtttggggtgggtacctatatacccgttacccgtcccatacccgtgtttt 35194014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 202 - 266
Target Start/End: Complemental strand, 10822595 - 10822531
Alignment:
Q  202 gggtgggtacctatattcccgttatccatcctatacctgtgttttgaaatcgaggaaaactcaaa 266  Q
    |||||||||| ||||  ||||||| || ||||||||| ||||||||||||||  |||||| ||||    
T  10822595 gggtgggtacatataaccccgttacccgtcctatacccgtgttttgaaatcggagaaaacccaaa 10822531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 80; Significance: 2e-37; HSPs: 45)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 45 - 267
Target Start/End: Complemental strand, 8844032 - 8843809
Alignment:
Q  45 atggaaggatataagagagaactatgataagtgagtgtcatctaaaagactgagactttgactacgtgagtgaaatgatttaggattttggtttctattt 144  Q
    ||||||||| | ||||||||||||||||||||||||||||||| |||| || ||||| |||||  |||||||||||||||||||||||  ||||||||||    
T  8844032 atggaaggagaaaagagagaactatgataagtgagtgtcatctgaaagtctaagactgtgactgtgtgagtgaaatgatttaggatttaagtttctattt 8843933  T
Q  145 gtataaaaggtatgataaattgattttct-catttgggacgggtttggatatgaatttgggtgggtacctatattcccgttatccatcctatacctgtgt 243  Q
     ||| |||||  | ||||||| ||||||| ||||   ||||||||||| ||||| || ||||||||| |||||| |||| || || |||   ||||||||    
T  8843932 atatgaaaggggtaataaattaattttctacattcacgacgggtttgggtatgagttcgggtgggtatctatatccccgctacccgtcccgcacctgtgt 8843833  T
Q  244 tttgaaatcgaggaaaactcaaac 267  Q
    ||| |||||| | |||| ||||||    
T  8843832 tttaaaatcgggaaaaattcaaac 8843809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 45 - 267
Target Start/End: Complemental strand, 8856996 - 8856773
Alignment:
Q  45 atggaaggatataagagagaactatgataagtgagtgtcatctaaaagactgagactttgactacgtgagtgaaatgatttaggattttggtttctattt 144  Q
    ||||||||| | ||||||||||||||||||||||||||||||| |||| || ||||| |||||  |||||||||||||||||||||||  ||||||||||    
T  8856996 atggaaggagaaaagagagaactatgataagtgagtgtcatctgaaagtctaagactgtgactgtgtgagtgaaatgatttaggatttaagtttctattt 8856897  T
Q  145 gtataaaaggtatgataaattgattttct-catttgggacgggtttggatatgaatttgggtgggtacctatattcccgttatccatcctatacctgtgt 243  Q
     ||| |||||  | ||||||| ||||||| ||||   ||||||||||| ||||| || ||||||||| |||||| |||| || || |||   ||||||||    
T  8856896 atatgaaaggggtaataaattaattttctacattcacgacgggtttgggtatgagttcgggtgggtatctatatccccgctacccgtcccgcacctgtgt 8856797  T
Q  244 tttgaaatcgaggaaaactcaaac 267  Q
    ||| |||||| | |||| ||||||    
T  8856796 tttaaaatcgggaaaaattcaaac 8856773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 33 - 173
Target Start/End: Complemental strand, 17113242 - 17113103
Alignment:
Q  33 agagtgtcagatatggaaggatataagagagaactatgataagtgagtgtcatctaaaagactgagactttgactacgtgagtgaaatgatttaggattt 132  Q
    ||||||| ||||||||||||| | |||||| |||||||||||||||||||||||| ||||||||||||| |||||  | ||||||||||||||| |||||    
T  17113242 agagtgtgagatatggaaggaaaaaagagataactatgataagtgagtgtcatctgaaagactgagactctgactttgggagtgaaatgatttaagattt 17113143  T
Q  133 tggtttctatttgtataaaag-gtatgataaattgattttct 173  Q
     ||||| ||||| ||| |||| |||  |||||||||||||||    
T  17113142 gggtttttatttatatgaaagagta--ataaattgattttct 17113103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 15 - 173
Target Start/End: Complemental strand, 33616373 - 33616215
Alignment:
Q  15 tagagaagagagaggtcaagagtgtcagatatggaaggatataagagagaactatgataagtgagtgtcatctaaaagactgagactttgactacgtgag 114  Q
    ||||| ||||| ||| | ||||||| ||||||||| ||| | ||||||||||||||||||||||||||||| | ||| | | ||||| |||||  |||||    
T  33616373 tagagtagagaaaggccgagagtgtgagatatggatggagaaaagagagaactatgataagtgagtgtcatatgaaatattaagactctgactgtgtgag 33616274  T
Q  115 tgaaatgatttaggattttggtttctatttgtataaaaggtatgataaattgattttct 173  Q
    |||||||||||||| ||||| ||| ||||| |||||||||  | |||||||||||||||    
T  33616273 tgaaatgatttagggttttgatttttatttatataaaaggggtaataaattgattttct 33616215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 17 - 196
Target Start/End: Original strand, 42907726 - 42907905
Alignment:
Q  17 gagaagagagaggtcaagagtgtcagatatggaaggatataagagagaactatgataagtgagtgtcatctaaaagactgagactttgactacgtgagtg 116  Q
    ||||||| ||||| ||||||||| ||||||||||||| | |||| |||||||||||||||| ||||||||| ||||||| ||||| | |||   ||||||    
T  42907726 gagaagaaagaggccaagagtgtgagatatggaaggagaaaagatagaactatgataagtgtgtgtcatctgaaagactaagactctaactgtatgagtg 42907825  T
Q  117 aaatgatttaggattttggtttctatttgtataaaag-gtatgataaattgattttct-catttgggacgggtttggatatg 196  Q
    |||||||||||| |||  |||||||||| |||||||| |||   |||||||||||||| |||| |||||| |||||| ||||    
T  42907826 aaatgatttagggtttgagtttctatttatataaaagagta--gtaaattgattttctacattcgggacgagtttgggtatg 42907905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 17 - 190
Target Start/End: Original strand, 36306624 - 36306798
Alignment:
Q  17 gagaagagagaggtcaagagtgtcagatatggaaggatataagagagaactatgataagtgagtgtcatctaaaagactgagactttgactacgtgagtg 116  Q
    ||||||||||||| | ||||||| ||||| |||| || |||||||  || ||||||||  ||||||||||| ||||||||||||| | | |  || ||||    
T  36306624 gagaagagagaggccgagagtgttagataaggaaagagataagagttaaatatgataaccgagtgtcatctcaaagactgagactctaattgtgtaagtg 36306723  T
Q  117 aaatgatttaggattttggtttctatttgtataaaaggtatgataaattgattttct-catttgggacgggtttg 190  Q
    |||||||||| ||||| | ||||||||| |||||||||  | ||||||||||||||| |||| ||||||||||||    
T  36306724 aaatgatttatgatttcgatttctatttatataaaaggggtaataaattgattttctacattcgggacgggtttg 36306798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 17 - 196
Target Start/End: Complemental strand, 7334439 - 7334261
Alignment:
Q  17 gagaagagagaggtcaagagtgtcagatatggaaggatataagagagaactatgataagtgagtgtcatctaaaagactgagactttgactacgtgagtg 116  Q
    ||||| ||||||| | ||| ||| ||||||||||||| | ||||||||| |||||||| | | ||||| |||||||||||||||||| |||  |||||||    
T  7334439 gagaaaagagaggccgagattgtgagatatggaaggagaaaagagagaattatgataaataaatgtcaactaaaagactgagactttaactgtgtgagtg 7334340  T
Q  117 aaatgatttaggattttggtttctatttgtataaaaggtatgataaattgattttc-tcatttgggacgggtttggatatg 196  Q
    |||||||||||  |||  |||||||||  |||||||   || ||||||||||||||  ||||||||||| |||||||||||    
T  7334339 aaatgatttagagtttgagtttctatt--tataaaaacgataataaattgattttcaacatttgggacgagtttggatatg 7334261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 35 - 173
Target Start/End: Complemental strand, 21957051 - 21956914
Alignment:
Q  35 agtgtcagatatggaaggatataagagagaactatgataagtgagtgtcatctaaaagactgagactttgactacgtgagtgaaatgatttaggattttg 134  Q
    ||||| ||||||||||||| | |||| | ||||||||||| |||||||||||||||||||||| ||| |||||  | || |||||||||||||| ||| |    
T  21957051 agtgtgagatatggaaggagaaaagatataactatgataaatgagtgtcatctaaaagactgacactctgactgtgcgaatgaaatgatttagggtttgg 21956952  T
Q  135 gtttctatttgtataaaaggtatgataaattgattttct 173  Q
    |||| ||||| |||||||||  | |||||||||||||||    
T  21956951 gtttttatttatataaaagg-gtaataaattgattttct 21956914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 18 - 173
Target Start/End: Complemental strand, 25265401 - 25265247
Alignment:
Q  18 agaagagagaggtcaagagtgtcagatatggaaggatataagagagaactatgataagtgagtgtcatctaaaagactgagactttgactacgtgagtga 117  Q
    |||||| ||||| | | ||||| ||||||||||||| | ||||||||||||||||||| || |||||||| ||| | ||||||| ||| |  |||||| |    
T  25265401 agaagaaagaggccgaaagtgtgagatatggaaggagaaaagagagaactatgataagcgactgtcatctgaaaaattgagactctgattgtgtgagtaa 25265302  T
Q  118 aatgatttaggattttggtttctatttgtataaaaggtatgataaattgattttct 173  Q
    |||||||||| ||||  |||||||||| |||| |||| || |||||||||||||||    
T  25265301 aatgatttagaatttgagtttctatttatatagaagg-ataataaattgattttct 25265247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 17 - 267
Target Start/End: Original strand, 25940979 - 25941229
Alignment:
Q  17 gagaagagagaggtcaagagtgtcagatatggaaggatataagagagaactatgataagtgagtgtcatctaaaagactgagactttgactacgtgagtg 116  Q
    ||||||||||| | | ||||||| |||| |||||||| | || |||  |||||||||||||| |||||||| ||||||| ||||| |||    |||||||    
T  25940979 gagaagagagaagccgagagtgtaagatttggaaggagaaaataga--actatgataagtgaatgtcatctgaaagactaagactatgatcgtgtgagtg 25941076  T
Q  117 aaatgatttaggattttggtttctatttgtataaaaggtatgataaattgattttct-catttgggacgggtttggatatgaatt-tgggtgggtaccta 214  Q
    || |||||||||  || ||||||||||| |||||||||  | ||||||||||||||| |||  | |||  |||||| ||||  ||  |||||||||||||    
T  25941077 aattgatttaggccttgggtttctatttatataaaaggggttataaattgattttctacatccgagacatgtttgggtatgggttcggggtgggtaccta 25941176  T
Q  215 tattcccgttatccatcctatacctgtgttttgaaatcgaggaaaactcaaac 267  Q
    | ||||||||| |  |||  |||| |||||||||||||| | ||||| |||||    
T  25941177 tcttcccgttacctgtcccgtacccgtgttttgaaatcgggaaaaacccaaac 25941229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 18 - 126
Target Start/End: Original strand, 37926401 - 37926507
Alignment:
Q  18 agaagagagaggtcaagagtgtcagatatggaaggatataagagagaactatgataagtgagtgtcatctaaaagactgagactttgactacgtgagtga 117  Q
    |||||| ||||||| ||||||| ||||||||||||| | || ||||||||||||||||||| |||||||  ||||||||||||||| |||  |||||| |    
T  37926401 agaagaaagaggtcgagagtgtgagatatggaaggagaaaatagagaactatgataagtgactgtcatc--aaagactgagactttaactgtgtgagtta 37926498  T
Q  118 aatgattta 126  Q
    |||||||||    
T  37926499 aatgattta 37926507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 17 - 216
Target Start/End: Complemental strand, 21714231 - 21714030
Alignment:
Q  17 gagaagagagaggtcaagagtgtcagatatggaaggatataagagagaactatgataagtgagtgtcatctaaaagactgagactttgactacgtgagtg 116  Q
    ||||||||| ||||| ||| ||| ||||| | || || | ||||||||||||||| ||||||||||||| | | ||||||||||| | | |  || ||||    
T  21714231 gagaagagaaaggtcgagaatgtgagatacgaaaagagaaaagagagaactatgagaagtgagtgtcatttgagagactgagactctaattgtgtaagtg 21714132  T
Q  117 aaatgatttaggattttggtttctatttgtataaaaggtatgataaattgattttct-catttgggacgggtttggatatgaattt-gggtgggtaccta 214  Q
    |||||||||||| |||  |||||||||| ||||||||   | ||||||| ||||||| |||||| |||| |||| | ||||| ||| |||||||||| ||    
T  21714131 aaatgatttagggtttgagtttctatttatataaaagaggtaataaattaattttctacatttgagacgagtttaggtatgagtttagggtgggtacata 21714032  T
Q  215 ta 216  Q
    ||    
T  21714031 ta 21714030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 33 - 173
Target Start/End: Complemental strand, 12075871 - 12075731
Alignment:
Q  33 agagtgtcagatatggaaggatataagagagaactatgataagtgagtgtcatctaaaagactgagactttgactacgtgagtgaaatgatttaggattt 132  Q
    ||||||| |||||| |||||| | ||||||||||||| |||||||  |||||||||||| ||||| ||| | |||  ||| ||||||||||| ||  |||    
T  12075871 agagtgtgagatatagaaggagaaaagagagaactataataagtggatgtcatctaaaaaactgaaactctaactgtgtgggtgaaatgattcagagttt 12075772  T
Q  133 tggtttctatttgtataaaaggtatgataaattgattttct 173  Q
    | |||||||||| ||||||| |  | |||||||||||||||    
T  12075771 tagtttctatttatataaaatgggtaataaattgattttct 12075731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 62 - 152
Target Start/End: Original strand, 39086040 - 39086130
Alignment:
Q  62 agaactatgataagtgagtgtcatctaaaagactgagactttgactacgtgagtgaaatgatttaggattttggtttctatttgtataaaa 152  Q
    ||||||||||||||| |||||||||| ||| ||||||| | |||||  ||||||||||||||||||| |||  |||||||||| |||||||    
T  39086040 agaactatgataagtaagtgtcatctgaaaaactgagagtctgactgtgtgagtgaaatgatttagggtttaagtttctatttatataaaa 39086130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 17 - 252
Target Start/End: Complemental strand, 25299088 - 25298852
Alignment:
Q  17 gagaagagagaggtcaagagtgtcagatatggaaggatataagagagaactatgataagtgagtgtcatctaaaagactgagactttgactacgtgagtg 116  Q
    ||||||||||| ||| ||| ||| ||||||||||||| | |||||| || |||||||| | ||||||| || ||||| || |||| | ||    ||||||    
T  25299088 gagaagagagaagtcgagattgtgagatatggaaggagaaaagagaaaattatgataaataagtgtcaactgaaagattgcgactctaacgttatgagtg 25298989  T
Q  117 aaatgatttaggattttggtttctatttgtataaaaggtatgataaattgattttc-tcatttgggacgggtttggatatgaatt-tgggtgggtaccta 214  Q
    |||||||||| || ||||  |||||||| || ||||||  ||||||||||||||||  ||||||| |||||||||| ||||  ||  ||||||  | |||    
T  25298988 aaatgattta-gagtttgagttctatttataaaaaaggggtgataaattgattttcaacatttggtacgggtttgggtatgggttcggggtggacagcta 25298890  T
Q  215 tattcccgttatccatcctatacctgtgttttgaaatc 252  Q
    ||| ||| ||| ||||||  |||| |||||||||||||    
T  25298889 tatccccattacccatcccgtacccgtgttttgaaatc 25298852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 64 - 271
Target Start/End: Complemental strand, 4741424 - 4741216
Alignment:
Q  64 aactatgataagtgagtgtcatctaaaagactgagactttgactacgtgagtgaaatgatttaggattttggtttctatttgtataaaaggtatgataaa 163  Q
    |||| ||| ||||||||||||||| | | | ||||||| ||| |  ||||| | || |||||||| |||  |||||||||| ||||||| | || |||||    
T  4741424 aactttgagaagtgagtgtcatctgagaaattgagactatgattgtgtgagaggaacgatttagggtttgagtttctatttatataaaatggataataaa 4741325  T
Q  164 ttgattttctcatttgggacgggtttggatatgaatttggg-tgggtacctatattcccgttatccatcctatacctgtgttttgaaatcgaggaaaact 262  Q
    |||||||   |||| || ||||||||   ||||  || ||| ||||||| ||||| || ||||||| ||| |||||  |||||| |||||||||||||||    
T  4741324 ttgatttatacattcggaacgggtttttgtatgggttcggggtgggtacttatatccctgttatccgtcccatacccatgttttaaaatcgaggaaaact 4741225  T
Q  263 caaactcat 271  Q
    |||||||||    
T  4741224 caaactcat 4741216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 55 - 127
Target Start/End: Complemental strand, 9929385 - 9929313
Alignment:
Q  55 ataagagagaactatgataagtgagtgtcatctaaaagactgagactttgactacgtgagtgaaatgatttag 127  Q
    |||||||||||||||||||||||| ||| ||||||||||| |||||| |||||  ||||||||||| ||||||    
T  9929385 ataagagagaactatgataagtgattgttatctaaaagaccgagactctgactgtgtgagtgaaattatttag 9929313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 35 - 151
Target Start/End: Original strand, 30034531 - 30034647
Alignment:
Q  35 agtgtcagatatggaaggatataagagagaactatgataagtgagtgtcatctaaaagactgagactttgactacgtgagtgaaatgatttaggattttg 134  Q
    ||||| ||||||||||||| | |||||| |||||||||||| ||||||||  | ||||| || |||| | |||   |||||||||||||||||| ||| |    
T  30034531 agtgtgagatatggaaggagaaaagagaaaactatgataagcgagtgtcacttgaaagattgtgactctcactttatgagtgaaatgatttagggtttgg 30034630  T
Q  135 gtttctatttgtataaa 151  Q
    |||||||||| ||||||    
T  30034631 gtttctatttatataaa 30034647  T

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Target: chr4; HSP #19
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 33 - 191
Target Start/End: Complemental strand, 33516313 - 33516153
Alignment:
Q  33 agagtgtcagatatggaaggatataagagagaactatgataagtgagtgtcatctaaaagactgagactttgac-tacgtgagtgaaatgatttaggatt 131  Q
    ||||||| | |||| |||||| | ||||||||| ||||||||||||||||||||| ||||||  ||||| | ||    ||||||||||||||||||| ||    
T  33516313 agagtgtgatatatagaaggagaaaagagagaattatgataagtgagtgtcatctgaaagaccaagactctaacgggtgtgagtgaaatgatttagggtt 33516214  T
Q  132 ttggtttctatttgtataaaaggtatgataaattgattttct-catttgggacgggtttgg 191  Q
    |  |||| ||||| |||||||||  | ||| ||||||||| | |||||| |||||||||||    
T  33516213 tgagtttttatttatataaaaggggtaatacattgattttttacatttgagacgggtttgg 33516153  T

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Target: chr4; HSP #20
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 174 - 271
Target Start/End: Original strand, 26564828 - 26564926
Alignment:
Q  174 catttgggacgggtttggatatgaatttggg-tgggtacctatattcccgttatccatcctatacctgtgttttgaaatcgaggaaaactcaaactcat 271  Q
    |||||||||||||||||| ||||  || ||| ||||||||||||| ||||||| || ||| ||||| | |||||||||||| ||||| |||||||||||    
T  26564828 catttgggacgggtttgggtatggtttcggggtgggtacctatatacccgttacccgtcccatacccgcgttttgaaatcggggaaagctcaaactcat 26564926  T

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Target: chr4; HSP #21
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 174 - 271
Target Start/End: Complemental strand, 55826721 - 55826623
Alignment:
Q  174 catttgggacgggtttggatatgaatttggg-tgggtacctatattcccgttatccatcctatacctgtgttttgaaatcgaggaaaactcaaactcat 271  Q
    |||||||||||||||||||||||  || ||| ||||||||||||| ||||||| || ||| |||||||||||| || |||| ||||||| || ||||||    
T  55826721 catttgggacgggtttggatatgggttcggggtgggtacctatatacccgttacccgtcccatacctgtgtttcgagatcggggaaaacccatactcat 55826623  T

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Target: chr4; HSP #22
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 33 - 173
Target Start/End: Complemental strand, 9281129 - 9280989
Alignment:
Q  33 agagtgtcagatatggaaggatataagagagaactatgataagtgagtgtcatctaaaagactgagactttgactacgtgagtgaaatgatttaggattt 132  Q
    ||||||| ||||||||||||| | ||||||| |||||||||||||| ||| |||| ||||| ||||||| | | |  || | || ||||||||||| |||    
T  9281129 agagtgtgagatatggaaggagaaaagagagtactatgataagtgaatgttatctgaaagattgagactctaattttgtcaatgtaatgatttagggttt 9281030  T
Q  133 tggtttctatttgtataaaaggtatgataaattgattttct 173  Q
       ||||||| | ||||||||| || ||||||| |||||||    
T  9281029 gaatttctatctatataaaagggataataaatttattttct 9280989  T

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Target: chr4; HSP #23
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 83
Target Start/End: Complemental strand, 40420830 - 40420765
Alignment:
Q  18 agaagagagaggtcaagagtgtcagatatggaaggatataagagagaactatgataagtgagtgtc 83  Q
    |||||||||||| ||||| ||| ||||||||||||| | |||||| || |||||||||||||||||    
T  40420830 agaagagagaggccaagaatgtgagatatggaaggagaaaagagaaaagtatgataagtgagtgtc 40420765  T

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Target: chr4; HSP #24
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 174 - 261
Target Start/End: Original strand, 11028070 - 11028158
Alignment:
Q  174 catttgggacgggtttggatatgaatttggg-tgggtacctatattcccgttatccatcctatacctgtgttttgaaatcgaggaaaac 261  Q
    |||||||||| ||||||| ||||| || ||| ||||||||||||| ||||||| || ||| ||||| ||||||||| |||| |||||||    
T  11028070 catttgggacaggtttgggtatgagttcggggtgggtacctatatacccgttacccgtcccatacccgtgttttgagatcggggaaaac 11028158  T

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Target: chr4; HSP #25
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 174 - 264
Target Start/End: Complemental strand, 47550451 - 47550360
Alignment:
Q  174 catttgggacgggtttggatatgaatttggg-tgggtacctatattcccgttatccatcctatacctgtgttttgaaatcgaggaaaactca 264  Q
    |||||||||||||||||| ||||  || ||| ||||||||||||| || |||| || ||| ||||| ||||||||| |||| ||||||||||    
T  47550451 catttgggacgggtttgggtatgggttcggggtgggtacctatatacctgttacccgtcccatacccgtgttttgagatcggggaaaactca 47550360  T

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Target: chr4; HSP #26
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 175 - 264
Target Start/End: Complemental strand, 15987359 - 15987269
Alignment:
Q  175 atttgggacgggtttggatatgaatt-tgggtgggtacctatattcccgttatccatcctatacctgtgttttgaaatcgaggaaaactca 264  Q
    ||||||||||||||||| ||||  ||  ||||||||| |||||| ||||||| |||||| ||||| ||||||| |||||  ||||||||||    
T  15987359 atttgggacgggtttgggtatgggttcggggtgggtatctatatacccgttacccatcccatacccgtgttttaaaatctgggaaaactca 15987269  T

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Target: chr4; HSP #27
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 154
Target Start/End: Complemental strand, 35304773 - 35304635
Alignment:
Q  16 agagaagagagaggtcaagagtgtcagatatggaaggatataagagagaactatgataagtgagtgtcatctaaaagactgagactttgactacgtgagt 115  Q
    |||||||| ||||| | ||||||| ||||||||||||| | || ||||||||  |||||||||   ||| || |||||||||||||  | ||  ||| ||    
T  35304773 agagaagaaagaggccgagagtgtgagatatggaaggagaaaaaagagaactgcgataagtgatcatcacctgaaagactgagactccggctctgtgggt 35304674  T
Q  116 gaaatgatttaggattttggtttctatttgtataaaagg 154  Q
    ||||||||||||  |||  |||||| ||| |||||||||    
T  35304673 gaaatgatttagagtttgagtttctttttatataaaagg 35304635  T

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Target: chr4; HSP #28
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 174 - 259
Target Start/End: Original strand, 43893225 - 43893311
Alignment:
Q  174 catttgggacgggtttggatatgaatt-tgggtgggtacctatattcccgttatccatcctatacctgtgttttgaaatcgaggaaa 259  Q
    |||||||||||||||||| ||||||||  |||||| ||||||||| ||||||| || ||| ||||| |||||| || |||| |||||    
T  43893225 catttgggacgggtttgggtatgaattcggggtggatacctatatacccgttacccgtcccatacccgtgtttcgagatcggggaaa 43893311  T

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Target: chr4; HSP #29
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 41 - 122
Target Start/End: Complemental strand, 24475046 - 24474965
Alignment:
Q  41 agatatggaaggatataagagagaactatgataagtgagtgtcatctaaaagactgagactttgactacgtgagtgaaatga 122  Q
    |||| |||||||| |  ||||||||||  || ||||||||||||||| ||||||||||||||||| |   ||||||||||||    
T  24475046 agatgtggaaggagaagagagagaacttagagaagtgagtgtcatctgaaagactgagactttgattgtatgagtgaaatga 24474965  T

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Target: chr4; HSP #30
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 202 - 271
Target Start/End: Original strand, 37107437 - 37107505
Alignment:
Q  202 gggtgggtacctatattcccgttatccatcctatacctgtgttttgaaatcgaggaaaactcaaactcat 271  Q
    |||||||||||||||| ||||||| || ||| ||||| |||||||||||| | ||||||| |||||||||    
T  37107437 gggtgggtacctatatacccgttacccgtcccatacccgtgttttgaaattg-ggaaaacccaaactcat 37107505  T

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Target: chr4; HSP #31
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 174 - 261
Target Start/End: Complemental strand, 5902712 - 5902624
Alignment:
Q  174 catttgggacgggtttggatatgaatttggg-tgggtacctatattcccgttatccatcctatacctgtgttttgaaatcgaggaaaac 261  Q
    |||||||||||||||||| ||||  || ||| ||||||||||||| ||||||| || ||| ||||| |||||| || |||| |||||||    
T  5902712 catttgggacgggtttgggtatgggttcggggtgggtacctatatacccgttacccgtcccatacccgtgtttcgagatcggggaaaac 5902624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 174 - 253
Target Start/End: Complemental strand, 6382370 - 6382290
Alignment:
Q  174 catttgggacgggtttggatatgaatttggg-tgggtacctatattcccgttatccatcctatacctgtgttttgaaatcg 253  Q
    |||||||||||||||||| ||||  || ||| ||||||||||||| ||||||| || ||| ||||| ||||||||| ||||    
T  6382370 catttgggacgggtttgggtatgggttcggggtgggtacctatatacccgttacccgtcccatacccgtgttttgagatcg 6382290  T

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Target: chr4; HSP #33
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 174 - 261
Target Start/End: Original strand, 7608967 - 7609055
Alignment:
Q  174 catttgggacgggtttggatatgaatttggg-tgggtacctatattcccgttatccatcctatacctgtgttttgaaatcgaggaaaac 261  Q
    |||||||||||||||||| ||||  || ||| ||||||||||||| ||||||| || ||| ||||| |||||| || |||| |||||||    
T  7608967 catttgggacgggtttgggtatgggttcggggtgggtacctatatacccgttacccgtcccatacccgtgtttcgagatcggggaaaac 7609055  T

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Target: chr4; HSP #34
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 202 - 270
Target Start/End: Complemental strand, 12825530 - 12825462
Alignment:
Q  202 gggtgggtacctatattcccgttatccatcctatacctgtgttttgaaatcgaggaaaactcaaactca 270  Q
    |||||||||| |||||  |||||| || ||| ||||| |||||||||||||| ||||||| ||||||||    
T  12825530 gggtgggtacgtatatatccgttacccgtcccatacccgtgttttgaaatcggggaaaacccaaactca 12825462  T

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Target: chr4; HSP #35
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 174 - 253
Target Start/End: Original strand, 32585486 - 32585566
Alignment:
Q  174 catttgggacgggtttggatatgaattt-gggtgggtacctatattcccgttatccatcctatacctgtgttttgaaatcg 253  Q
    |||||||||||||||||| ||||  ||  |||||||||||||||| ||||||| |  ||| ||||| ||||||||||||||    
T  32585486 catttgggacgggtttgggtatgggttcagggtgggtacctatatacccgttacctgtcccatacccgtgttttgaaatcg 32585566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 186 - 261
Target Start/End: Complemental strand, 32596270 - 32596194
Alignment:
Q  186 gtttggatatgaatttg-ggtgggtacctatattcccgttatccatcctatacctgtgttttgaaatcgaggaaaac 261  Q
    |||||| ||||| |||| |||||| |||||||| ||||||| || ||| ||||| |||||||||||||| |||||||    
T  32596270 gtttgggtatgagtttgaggtggggacctatatacccgttacccgtcccatacccgtgttttgaaatcggggaaaac 32596194  T

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Target: chr4; HSP #37
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 153
Target Start/End: Original strand, 36918963 - 36919098
Alignment:
Q  17 gagaagagagaggtcaagagtgtcagatatggaaggatataagagagaactatgataagtgagtgtcatctaaaagactgagactttgactacgtgagtg 116  Q
    ||||||||||||| | ||||||| |   ||| ||||| | || |||||| ||||| |||||  |||||||| |||| |||||||| | |||  |||||||    
T  36918963 gagaagagagaggccgagagtgtgacgcatgtaaggagaaaaaagagaaatatgacaagtggatgtcatctgaaagtctgagactct-actgtgtgagtg 36919061  T
Q  117 aaatgatttaggattttggtttctatttgtataaaag 153  Q
    |||||||||||  |||  |||||||||| ||||||||    
T  36919062 aaatgatttagagtttgagtttctatttatataaaag 36919098  T

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Target: chr4; HSP #38
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 110 - 190
Target Start/End: Original strand, 37384205 - 37384285
Alignment:
Q  110 gtgagtgaaatgatttaggattttggtttctatttgtataaaaggtatgataaattgattttctcatttgggacgggtttg 190  Q
    ||||||||||||||||||| |||    |||||||| ||||||||| || ||||||||||||    ||||||||||||||||    
T  37384205 gtgagtgaaatgatttagggtttgaacttctatttatataaaagggataataaattgatttctatatttgggacgggtttg 37384285  T

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Target: chr4; HSP #39
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 174 - 261
Target Start/End: Original strand, 44317532 - 44317620
Alignment:
Q  174 catttgggacgggtttggatatgaatttggg-tgggtacctatattcccgttatccatcctatacctgtgttttgaaatcgaggaaaac 261  Q
    |||||||||||||||||| ||||  || ||| ||||||||||||| ||||||| || ||| ||||| |||||| || |||| |||||||    
T  44317532 catttgggacgggtttgggtatgggttcggggtgggtacctatatacccgttacccgtcccatacccgtgtttcgagatcggggaaaac 44317620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 174 - 244
Target Start/End: Original strand, 9230279 - 9230350
Alignment:
Q  174 catttgggacgggtttggatatgaatttggg-tgggtacctatattcccgttatccatcctatacctgtgtt 244  Q
    |||| ||||||||||||| ||||| |||||| ||| ||||||||| | |||||||| ||||||||| |||||    
T  9230279 cattcgggacgggtttggttatgagtttgggatggatacctatatactcgttatccgtcctatacccgtgtt 9230350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 177 - 271
Target Start/End: Original strand, 39375278 - 39375373
Alignment:
Q  177 ttgggacgggtttggatatga-atttgggtgggtacctatattcccgttatccatcctatacctgtgttttgaaatcgaggaaaactcaaactcat 271  Q
    ||||||||||||||  ||||  ||| |||||| || |||||| ||||||| || ||||||||| || ||||||||||| ||||||  |||||||||    
T  39375278 ttgggacgggtttgagtatgtgattggggtggatatctatatacccgttacccgtcctatacccgtattttgaaatcggggaaaagccaaactcat 39375373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 174 - 267
Target Start/End: Complemental strand, 1724408 - 1724314
Alignment:
Q  174 catttgggacgggtttggatatgaatttggg-tgggtacctatattcccgttatccatcctatacctgtgttttgaaatcgaggaaaactcaaac 267  Q
    |||| ||||||||||||| ||||  || ||| |||||||||||||  |||||| || ||| |||||  ||||||||||||| ||||||| |||||    
T  1724408 cattcgggacgggtttgggtatgggttcggggtgggtacctatataaccgttacccgtcccatacccatgttttgaaatcggggaaaacccaaac 1724314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 205 - 267
Target Start/End: Complemental strand, 33615395 - 33615333
Alignment:
Q  205 tgggtacctatattcccgttatccatcctatacctgtgttttgaaatcgaggaaaactcaaac 267  Q
    ||||||||||||| ||||||| || ||| |||||||| || | ||||||||||||||| ||||    
T  33615395 tgggtacctatatccccgttacccgtcccatacctgttttattaaatcgaggaaaacttaaac 33615333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 235 - 271
Target Start/End: Original strand, 37349171 - 37349207
Alignment:
Q  235 tacctgtgttttgaaatcgaggaaaactcaaactcat 271  Q
    |||| |||||||||||||| |||||||||||||||||    
T  37349171 tacccgtgttttgaaatcggggaaaactcaaactcat 37349207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 117 - 173
Target Start/End: Complemental strand, 40420741 - 40420685
Alignment:
Q  117 aaatgatttaggattttggtttctatttgtataaaaggtatgataaattgattttct 173  Q
    ||||||||| || ||||||||||||||| |||||||||  | ||||| |||||||||    
T  40420741 aaatgatttggggttttggtttctatttatataaaaggggtaataaagtgattttct 40420685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 76; Significance: 4e-35; HSPs: 32)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 17 - 152
Target Start/End: Original strand, 27252401 - 27252535
Alignment:
Q  17 gagaagagagaggtcaagagtgtcagatatggaaggatataagagagaactatgataagtgagtgtcatctaaaagactgagactttgactacgtgagtg 116  Q
    ||||||||||||| | ||||||| ||||||||||||| | |||||||||||| |||||||||||||||||| ||||||||| ||| | |||  |||||||    
T  27252401 gagaagagagaggccgagagtgtgagatatggaaggaga-aagagagaactaagataagtgagtgtcatctgaaagactgatactctaactgtgtgagtg 27252499  T
Q  117 aaatgatttaggattttggtttctatttgtataaaa 152  Q
    |||||||||| ||||||||||||||||| |||||||    
T  27252500 aaatgatttatgattttggtttctatttatataaaa 27252535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 36 - 154
Target Start/End: Complemental strand, 3386092 - 3385974
Alignment:
Q  36 gtgtcagatatggaaggatataagagagaactatgataagtgagtgtcatctaaaagactgagactttgactacgtgagtgaaatgatttaggattttgg 135  Q
    |||| ||||||||||||| ||||||||||||| ||||||| |||||||| ||||||||| |||||||| |||| || |||||||||||||||||||| |     
T  3386092 gtgtgagatatggaaggagataagagagaactttgataagagagtgtcaactaaaagaccgagactttaactatgtaagtgaaatgatttaggatttcga 3385993  T
Q  136 tttctatttgtataaaagg 154  Q
    ||| ||||| || ||||||    
T  3385992 tttttatttatagaaaagg 3385974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 36 - 190
Target Start/End: Complemental strand, 3414769 - 3414614
Alignment:
Q  36 gtgtcagatatggaaggatataagagagaactatgataagtgagtgtcatctaaaagactgagactttgactacgtgagtgaaatgatttaggattttgg 135  Q
    |||| ||||||||||||| |||||| |||||| ||| ||| |||||||| ||||||||  ||||||||||||| ||||||||||||||||||| ||| |     
T  3414769 gtgtgagatatggaaggagataagatagaactttgagaagagagtgtcaactaaaagaacgagactttgactatgtgagtgaaatgatttagggtttcga 3414670  T
Q  136 tttctatttgtataaaaggtatgataaattgattttct-catttgggacgggtttg 190  Q
    ||| ||||| || ||||||  |  |||| ||||||||| |||| || |||||||||    
T  3414669 tttttatttatagaaaaggggtattaaaatgattttctacattaggtacgggtttg 3414614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 17 - 152
Target Start/End: Original strand, 26207120 - 26207251
Alignment:
Q  17 gagaagagagaggtcaagagtgtcagatatggaaggatataagagagaactatgataagtgagtgtcatctaaaagactgagactttgactacgtgagtg 116  Q
    ||||||||||||| | ||||||| |||||||| |||| | ||  ||||||||||| |||||||||||||||||||||  ||||||    |||  || |||    
T  26207120 gagaagagagaggccgagagtgtgagatatgggaggagaaaaatgagaactatgacaagtgagtgtcatctaaaagatggagact----ctaactgtgtg 26207215  T
Q  117 aaatgatttaggattttggtttctatttgtataaaa 152  Q
    |||||||||||| ||| |||||| |||| |||||||    
T  26207216 aaatgatttagggtttgggtttcaatttatataaaa 26207251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 202 - 267
Target Start/End: Original strand, 54317164 - 54317229
Alignment:
Q  202 gggtgggtacctatattcccgttatccatcctatacctgtgttttgaaatcgaggaaaactcaaac 267  Q
    |||||||||||||||| ||||||| || |||||||| ||||||||||||||| |||||||||||||    
T  54317164 gggtgggtacctatatacccgttacccgtcctatacttgtgttttgaaatcggggaaaactcaaac 54317229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 202 - 271
Target Start/End: Original strand, 19111754 - 19111823
Alignment:
Q  202 gggtgggtacctatattcccgttatccatcctatacctgtgttttgaaatcgaggaaaactcaaactcat 271  Q
    |||||||||| ||||| ||||||||||||||  |||| |||||||||||||| | |||||||||||||||    
T  19111754 gggtgggtacttatatacccgttatccatcccgtacccgtgttttgaaatcgggaaaaactcaaactcat 19111823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 17 - 173
Target Start/End: Complemental strand, 773050 - 772893
Alignment:
Q  17 gagaagagagaggtcaa--gagtgtcagatatggaaggatataagagagaactatgataagtgagtgtcatctaaaagactgagactttgactacgtgag 114  Q
    ||||||||||||||| |  |||||| ||| ||| ||||| | ||||||||| ||||| ||| |||||||||||| |||  |||||||| || |  |||||    
T  773050 gagaagagagaggtcgatagagtgtgagacatgaaaggagaaaagagagaaatatgacaagcgagtgtcatctagaagtgtgagacttagattgtgtgag 772951  T
Q  115 tgaaatgatttaggattttggtttctatttgtataaaaggtatgataaattgattttct 173  Q
    |||||||||| | | |||  |||||||||| || ||||||  | |||||||||||||||    
T  772950 tgaaatgattcaaggtttgagtttctatttatacaaaagg-gtaataaattgattttct 772893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 71 - 252
Target Start/End: Complemental strand, 30905016 - 30904834
Alignment:
Q  71 ataagtgagtgtcatctaaaagactgagactttgactacgtgagtgaaatgatttaggattttggtttctatttgtataaaaggtatgataaattgattt 170  Q
    ||||||||||||||| | |||||||   ||| ||||||  |||||||||||||| ||| ||| ||||||||||| |||||||||  |  |||||||||||    
T  30905016 ataagtgagtgtcatatgaaagactacaactctgactatatgagtgaaatgattaagggtttgggtttctatttatataaaaggggtagtaaattgattt 30904917  T
Q  171 tct-catttgggacgggtttggatatgaatt-tgggtgggtacctatattcccgttatccatcctatacctgtgttttgaaatc 252  Q
     || |||| | ||||| ||||| ||||  ||  |||||||||||||||| |||| || || |||  |||| |||||||||||||    
T  30904916 cctacattcgagacggatttgggtatgggttcggggtgggtacctatatccccg-tacccgtcccgtacccgtgttttgaaatc 30904834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 18 - 100
Target Start/End: Original strand, 34592990 - 34593072
Alignment:
Q  18 agaagagagaggtcaagagtgtcagatatggaaggatataagagagaactatgataagtgagtgtcatctaaaagactgagac 100  Q
    |||||||||||||| ||||||| ||||||||||||| | |  | ||||||||||||||||||||| || | |||||| |||||    
T  34592990 agaagagagaggtcgagagtgtgagatatggaaggagaaacaatagaactatgataagtgagtgttatgtgaaagaccgagac 34593072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 174 - 261
Target Start/End: Original strand, 39728662 - 39728750
Alignment:
Q  174 catttgggacgggtttggatatgaatttggg-tgggtacctatattcccgttatccatcctatacctgtgttttgaaatcgaggaaaac 261  Q
    |||||||||||||||||| ||||  || ||| ||||||| ||||| ||||||| |||||| ||||| || |||||| ||||||||||||    
T  39728662 catttgggacgggtttgggtatgggttcggggtgggtacttatatacccgttacccatcccatacccgtattttgagatcgaggaaaac 39728750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 205 - 261
Target Start/End: Complemental strand, 48390882 - 48390826
Alignment:
Q  205 tgggtacctatattcccgttatccatcctatacctgtgttttgaaatcgaggaaaac 261  Q
    ||||||||||||||||||||| || ||| ||||| |||||||||||||| |||||||    
T  48390882 tgggtacctatattcccgttacccgtcccatacccgtgttttgaaatcggggaaaac 48390826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 204 - 267
Target Start/End: Complemental strand, 4016110 - 4016047
Alignment:
Q  204 gtgggtacctatattcccgttatccatcctatacctgtgttttgaaatcgaggaaaactcaaac 267  Q
    |||||||||||||| |||||||||| ||| |||||  ||||||||||||| ||||||| |||||    
T  4016110 gtgggtacctatatacccgttatccgtcccatacccatgttttgaaatcggggaaaacccaaac 4016047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 146 - 271
Target Start/End: Original strand, 42243349 - 42243476
Alignment:
Q  146 tataaaaggtatgataaattgattttct-catttgggacgggtttggatatgaattt-gggtgggtacctatattcccgttatccatcctatacctgtgt 243  Q
    |||||||||  | ||||||||||||||| ||||| ||| |||||||| ||||||||| |||||| ||  ||||| | ||||| |||||  ||||| ||||    
T  42243349 tataaaaggggtaataaattgattttctacatttaggatgggtttgggtatgaatttggggtggataaatatatcctcgttacccatctcatacccgtgt 42243448  T
Q  244 tttgaaatcgaggaaaactcaaactcat 271  Q
     ||||||||| | ||||| |||||||||    
T  42243449 attgaaatcgggaaaaacccaaactcat 42243476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 174 - 264
Target Start/End: Original strand, 52572600 - 52572691
Alignment:
Q  174 catttgggacgggtttggatatgaatttggg-tgggtacctatattcccgttatccatcctatacctgtgttttgaaatcgaggaaaactca 264  Q
    ||||||||||||| |||  |||| ||| ||| ||||| ||||||| ||||||| || ||| ||||| ||||||||| |||||||||||||||    
T  52572600 catttgggacgggcttgagtatggattcggggtgggtccctatatacccgttacccgtcccatacccgtgttttgagatcgaggaaaactca 52572691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 85
Target Start/End: Original strand, 27937562 - 27937632
Alignment:
Q  15 tagagaagagagaggtcaagagtgtcagatatggaaggatataagagagaactatgataagtgagtgtcat 85  Q
    ||||||||||||||  | ||||||| |||||||||| || | |||| |||||||| |||||||||||||||    
T  27937562 tagagaagagagagaccgagagtgtgagatatggaaagagaaaagaaagaactataataagtgagtgtcat 27937632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 174 - 271
Target Start/End: Original strand, 34119647 - 34119745
Alignment:
Q  174 catttgggacgggtttggatatgaatttggg-tgggtacctatattcccgttatccatcctatacctgtgttttgaaatcgaggaaaactcaaactcat 271  Q
    |||||||||||| ||||| ||||  || ||| ||||||||||||| || ||||||| ||  ||||| ||||||| |||||| | |||||||||||||||    
T  34119647 catttgggacggatttgggtatgggttcggggtgggtacctatatacctgttatccgtctcatacccgtgttttaaaatcgggaaaaactcaaactcat 34119745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 174 - 264
Target Start/End: Original strand, 43582569 - 43582659
Alignment:
Q  174 catttgggacgggtttggatatgaatttgggtgggtacctatattcccgttatccatcctatacctgtgttttgaaatcgaggaaaactca 264  Q
    |||||||||||||| || |||||  || ||||||||||||| || | ||||| || ||  ||||| |||||||||||||| ||||||||||    
T  43582569 catttgggacgggtatgaatatgggttcgggtgggtacctacatacacgttacccgtctcatacccgtgttttgaaatcggggaaaactca 43582659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 174 - 267
Target Start/End: Original strand, 49025672 - 49025765
Alignment:
Q  174 catttgggacgggtttggatatgaatttgggtgggtacctatattcccgttatccatcctatacctgtgttttgaaatcgaggaaaactcaaac 267  Q
    |||||||||||||||||| ||||  || || || |||||||||| || |||| || ||| ||||| ||||||||| |||| ||||||| |||||    
T  49025672 catttgggacgggtttgggtatgggttcggatgtgtacctatatacctgttacccgtcccatacccgtgttttgagatcggggaaaacccaaac 49025765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 110 - 170
Target Start/End: Original strand, 27937665 - 27937725
Alignment:
Q  110 gtgagtgaaatgatttaggattttggtttctatttgtataaaaggtatgataaattgattt 170  Q
    ||||||||||||||||||| ||| ||||||||||| |||||||| | | ||||||| ||||    
T  27937665 gtgagtgaaatgatttagggtttaggtttctatttatataaaagctgtaataaattaattt 27937725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 174 - 261
Target Start/End: Original strand, 34025945 - 34026033
Alignment:
Q  174 catttgggacgggtttggatatgaatttggg-tgggtacctatattcccgttatccatcctatacctgtgttttgaaatcgaggaaaac 261  Q
    |||||||||||||| ||| ||||| || ||| |||  |||||||| | ||||| || ||| |||||||||||||||||||| |||||||    
T  34025945 catttgggacgggtatgggtatgagttcggggtggaaacctatatactcgttacccgtcccatacctgtgttttgaaatcggggaaaac 34026033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 173
Target Start/End: Complemental strand, 37032350 - 37032197
Alignment:
Q  18 agaagagagaggtcaagagtgtcagatatggaaggatataagagagaactatgataagtgagtgtcatctaaaagactgagactttgactacgtgagtga 117  Q
    ||||||||||||   |||||||   |||| |||||| | |||| ||||||||||||| ||  |||||||| |||||| |||||| ||| |   |||||||    
T  37032350 agaagagagaggctgagagtgtggaatattgaaggagaaaagaaagaactatgataattg--tgtcatctgaaagaccgagactctgattgtatgagtga 37032253  T
Q  118 aatgatttaggattttggtttctatttgtataaaaggtatgataaattgattttct 173  Q
    ||||||||||| |||  |||| ||||| ||||||| |  | ||||||| |||||||    
T  37032252 aatgatttagggtttgagtttttatttatataaaatgggtaataaattaattttct 37032197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 174 - 261
Target Start/End: Complemental strand, 39655370 - 39655282
Alignment:
Q  174 catttgggacgggtttggatatgaatttggg-tgggtacctatattcccgttatccatcctatacctgtgttttgaaatcgaggaaaac 261  Q
    |||||| ||||||||||| ||||  |||||| ||||||||||||| || |||| || ||| ||||| ||||||||| |||| |||||||    
T  39655370 catttgagacgggtttgggtatgggtttggggtgggtacctatatacctgttacccgtcccatacccgtgttttgagatcggggaaaac 39655282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 174 - 261
Target Start/End: Original strand, 44172617 - 44172705
Alignment:
Q  174 catttgggacgggtttggatatgaatt-tgggtgggtacctatattcccgttatccatcctatacctgtgttttgaaatcgaggaaaac 261  Q
    |||||||||||||||||| ||||  ||  |||||||||| ||||| ||||||| || ||| ||||| ||||||||| |||| |||||||    
T  44172617 catttgggacgggtttgggtatgggttcggggtgggtacttatatacccgttacccgtcccatacccgtgttttgagatcggggaaaac 44172705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 174 - 261
Target Start/End: Original strand, 44179317 - 44179405
Alignment:
Q  174 catttgggacgggtttggatatgaatt-tgggtgggtacctatattcccgttatccatcctatacctgtgttttgaaatcgaggaaaac 261  Q
    |||||||||||||||||| ||||  ||  |||||||||| ||||| ||||||| || ||| ||||| ||||||||| |||| |||||||    
T  44179317 catttgggacgggtttgggtatgggttcggggtgggtacttatatacccgttacccgtcccatacccgtgttttgagatcggggaaaac 44179405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 174 - 261
Target Start/End: Complemental strand, 44953532 - 44953444
Alignment:
Q  174 catttgggacgggtttggatatgaatt-tgggtgggtacctatattcccgttatccatcctatacctgtgttttgaaatcgaggaaaac 261  Q
    |||||||||||||||||  ||||| ||  ||||| |||||||||| ||||||| || ||| ||||| ||||||||| |||| |||||||    
T  44953532 catttgggacgggtttgagtatgagttcggggtgagtacctatatacccgttacccgtcccatacccgtgttttgagatcggggaaaac 44953444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 174 - 253
Target Start/End: Original strand, 52198146 - 52198226
Alignment:
Q  174 catttgggacgggtttggatatgaatttggg-tgggtacctatattcccgttatccatcctatacctgtgttttgaaatcg 253  Q
    ||||||| |||||||||| ||||  || ||| ||||||||||||| ||||||| || ||| ||||||||||||||| ||||    
T  52198146 catttggaacgggtttgggtatgggttcggggtgggtacctatatacccgttacccgtcccatacctgtgttttgagatcg 52198226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 240 - 271
Target Start/End: Complemental strand, 23910282 - 23910251
Alignment:
Q  240 gtgttttgaaatcgaggaaaactcaaactcat 271  Q
    ||||||||||||||||||||||||||||||||    
T  23910282 gtgttttgaaatcgaggaaaactcaaactcat 23910251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 85
Target Start/End: Original strand, 40890203 - 40890265
Alignment:
Q  23 agagaggtcaagagtgtcagatatggaaggatataagagagaactatgataagtgagtgtcat 85  Q
    |||||||||  |||||| ||| ||||||||| | ||||||||||||||||||  |||||||||    
T  40890203 agagaggtcgggagtgtgagagatggaaggagaaaagagagaactatgataaacgagtgtcat 40890265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 209 - 271
Target Start/End: Original strand, 42758401 - 42758463
Alignment:
Q  209 tacctatattcccgttatccatcctatacctgtgttttgaaatcgaggaaaactcaaactcat 271  Q
    ||||||||| || |||| || ||| |||||||||||||||||||| || |||| |||||||||    
T  42758401 tacctatatacctgttacccgtcccatacctgtgttttgaaatcgggggaaacccaaactcat 42758463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 174 - 261
Target Start/End: Complemental strand, 23547039 - 23546951
Alignment:
Q  174 catttgggacgggtttggatatgaatttggg-tgggtacctatattcccgttatccatcctatacctgtgttttgaaatcgaggaaaac 261  Q
    ||||||||||| |||||| ||||  || ||| ||||||||||||| ||||||| || ||| ||||| |||||| || |||| |||||||    
T  23547039 catttgggacgagtttgggtatgggttcggggtgggtacctatatacccgttacccgtcccatacccgtgtttcgagatcggggaaaac 23546951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 235 - 271
Target Start/End: Original strand, 40890393 - 40890429
Alignment:
Q  235 tacctgtgttttgaaatcgaggaaaactcaaactcat 271  Q
    |||||||| ||||||||||||||||||||| ||||||    
T  40890393 tacctgtgctttgaaatcgaggaaaactcatactcat 40890429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 174 - 261
Target Start/End: Original strand, 49580055 - 49580143
Alignment:
Q  174 catttgggacgggtttggatatgaatttg-ggtgggtacctatattcccgttatccatcctatacctgtgttttgaaatcgaggaaaac 261  Q
    |||||||||||||||||  ||||  || | ||||||||||||||| | ||||| || ||| ||||| ||||||||| |||| |||||||    
T  49580055 catttgggacgggtttgagtatgggttcgaggtgggtacctatatactcgttacccgtcccatacccgtgttttgagatcggggaaaac 49580143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 76; Significance: 4e-35; HSPs: 29)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 17 - 171
Target Start/End: Complemental strand, 29656991 - 29656836
Alignment:
Q  17 gagaagagagaggtcaagagtgtcagatatggaaggatataagagagaactatgataa-gtgagtgtcatctaaaagactgagactttgactacgtgagt 115  Q
    ||||||||||||| | ||| ||| ||||||| ||||| ||||||||||| |||||||| || |||||||||| |||||||||||||||||||  ||||||    
T  29656991 gagaagagagaggccgagaatgtgagatatgtaaggagataagagagaattatgataaagtcagtgtcatctgaaagactgagactttgactgtgtgagt 29656892  T
Q  116 gaaatgatttaggattttggtttctatttgtataaaaggtatgataaattgatttt 171  Q
     |||||||||||| || |||||| ||||| ||||||||| || |||||||||||||    
T  29656891 caaatgatttagggttatggtttttatttatataaaagggataataaattgatttt 29656836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 17 - 267
Target Start/End: Complemental strand, 35248636 - 35248388
Alignment:
Q  17 gagaagagagaggtcaagagtgtcagatatggaaggatataagagagaactatgataagtgagtgtcatctaaaagactgagactttgactacgtgagtg 116  Q
    ||||||||||||| ||| ||||| ||||||||||||| ||||||||||||||| ||||| ||||||||| | ||||||||||||| || ||  |||||||    
T  35248636 gagaagagagaggccaaaagtgtgagatatggaaggagataagagagaactataataagcgagtgtcatttgaaagactgagactctgtctgtgtgagtg 35248537  T
Q  117 aaatgatttaggattttggtttctatttgtataaaaggtatgataaattgattttct-catttgggacgggtttggatatgaatt-tgggtgggtaccta 214  Q
    |||||||||||| |||   ||||||||| |||||||||  | ||| ||   |||||| ||||  |||||||||||| ||||  ||  ||||||||||||     
T  35248536 aaatgatttagggtttcattttctatttatataaaaggggt-atatat---ttttctacattcaggacgggtttgggtatgggttcggggtgggtacctt 35248441  T
Q  215 tattcccgttatccatcctatacctgtgttttgaaatcgaggaaaactcaaac 267  Q
    ||| ||| ||| || ||| ||||| |||||||| ||||| ||||||| |||||    
T  35248440 tatcccctttacccgtcccatacccgtgttttgtaatcgtggaaaacccaaac 35248388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 23 - 154
Target Start/End: Complemental strand, 31601017 - 31600886
Alignment:
Q  23 agagaggtcaagagtgtcagatatggaaggatataagagagaactatgataagtgagtgtcatctaaaagactgagactttgactacgtgagtgaaatga 122  Q
    ||||||| ||| ||||| ||||||||||||||| ||||||||||||||||||||||| ||||| | ||||||| ||||| | |||   ||||||||||||    
T  31601017 agagaggccaatagtgtgagatatggaaggatagaagagagaactatgataagtgagcgtcatatgaaagactaagactctaactgtatgagtgaaatga 31600918  T
Q  123 tttaggattttggtttctatttgtataaaagg 154  Q
    |||||  |||  |||||||||| |||||||||    
T  31600917 tttagagtttgagtttctatttatataaaagg 31600886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 17 - 267
Target Start/End: Original strand, 35965168 - 35965420
Alignment:
Q  17 gagaagagagaggtcaagagtgtcagatatggaaggatataagagagaactatgataagtgagtgtcatctaaaagactgagactttgactacgtgagtg 116  Q
    ||||||||||| | | ||||||| ||||||||||||| |||| ||||||||||||||||||| ||| |||| ||| |||||||   | |||   ||||||    
T  35965168 gagaagagagatgacgagagtgtgagatatggaaggagataaaagagaactatgataagtgaatgttatctgaaaaactgagatcctcactgtatgagtg 35965267  T
Q  117 aaatgatttaggattttggtttctattt-gtataaaaggtatgataaattgattttct-catttgggacgggtttggatatgaatttgg-gtgggtacct 213  Q
    |||||||||| |  ||   || |||||| ||||||||||    ||||||||||||||| |||| ||||||||||||| ||||  || || |||||||| |    
T  35965268 aaatgatttatggattcaattcctatttagtataaaaggggcaataaattgattttctacattcgggacgggtttgggtatgggttcggagtgggtacat 35965367  T
Q  214 atattcccgttatccatcctatacctgtgttttgaaatcgaggaaaactcaaac 267  Q
     ||| ||| |||  ||||| ||||| |||||||||||||| |||||||||||||    
T  35965368 gtatccccattacacatcc-atacccgtgttttgaaatcggggaaaactcaaac 35965420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 57 - 246
Target Start/End: Original strand, 25210251 - 25210442
Alignment:
Q  57 aagagagaactatgataagtgagtgtcatctaaaagactgagactttgactacgtgagtgaaatgatttaggattttggtttctatttgtataaaaggta 156  Q
    |||||| |||||||||||||||||| |||||||||  ||||||||  ||||  ||||||||||||||||||| |||  |||||||||| ||||||| |      
T  25210251 aagagataactatgataagtgagtgccatctaaaattctgagactccgactgtgtgagtgaaatgatttagggtttgagtttctatttatataaaatggg 25210350  T
Q  157 tgataaattgattttct-catttgggacgggtttggatatgaattt-gggtgggtacctatattcccgttatccatcctatacctgtgtttt 246  Q
    | | ||||||||||||| |||| |||| |||||| | ||||  ||| |||||||||| ||||| | ||||| || ||| ||||| |||||||    
T  25210351 taacaaattgattttctacattcgggaggggttttggtatgggtttggggtgggtacatatatcctcgttacccgtcccatacccgtgtttt 25210442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 18 - 127
Target Start/End: Complemental strand, 34214910 - 34214801
Alignment:
Q  18 agaagagagaggtcaagagtgtcagatatggaaggatataagagagaactatgataagtgagtgtcatctaaaagactgagactttgactacgtgagtga 117  Q
    |||||||||||| | | ||||| |||||| |||||| | ||||| ||||||||||||||||||||||| | ||||||||||||| |||||  || |||||    
T  34214910 agaagagagaggccgaaagtgtgagatatcgaaggagaaaagagcgaactatgataagtgagtgtcatgtgaaagactgagactctgactgtgttagtga 34214811  T
Q  118 aatgatttag 127  Q
    ||||||||||    
T  34214810 aatgatttag 34214801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 57 - 153
Target Start/End: Original strand, 13954619 - 13954715
Alignment:
Q  57 aagagagaactatgataagtgagtgtcatctaaaagactgagactttgactacgtgagtgaaatgatttaggattttggtttctatttgtataaaag 153  Q
    ||||||||||||| ||||||||||||||||| |||| |||||||| | ||   ||||||||||||||||||| ||   |||||||||| ||||||||    
T  13954619 aagagagaactatcataagtgagtgtcatctgaaagtctgagactctcaccgagtgagtgaaatgatttagggttcgagtttctatttatataaaag 13954715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 57 - 153
Target Start/End: Original strand, 14095826 - 14095922
Alignment:
Q  57 aagagagaactatgataagtgagtgtcatctaaaagactgagactttgactacgtgagtgaaatgatttaggattttggtttctatttgtataaaag 153  Q
    ||||||||||||| ||||||||||||||||| |||| |||||||| | ||   ||||||||||||||||||| ||   |||||||||| ||||||||    
T  14095826 aagagagaactatcataagtgagtgtcatctgaaagtctgagactctcaccgagtgagtgaaatgatttagggttcgagtttctatttatataaaag 14095922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 60 - 190
Target Start/End: Original strand, 13531827 - 13531957
Alignment:
Q  60 agagaactatgataagtgagtgtcatctaaaagactgagactttgactacgtgagtgaaatgatttaggattttggtttctatttgtataaaaggtatga 159  Q
    |||||||| ||| ||||||||||||||| | ||||| ||  ||||| |  ||||||||||||||||||| |||  |||||||||| ||||||| | || |    
T  13531827 agagaactctgagaagtgagtgtcatctgagagactaagt-tttgattgtgtgagtgaaatgatttagggtttgagtttctatttatataaaatggataa 13531925  T
Q  160 taaattgattttct-catttgggacgggtttg 190  Q
    |||||||||||||| ||| |||| ||||||||    
T  13531926 taaattgattttctacatgtggggcgggtttg 13531957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 17 - 217
Target Start/End: Original strand, 30696758 - 30696960
Alignment:
Q  17 gagaagagagaggtcaagagtgtcagatatggaaggatataagagagaactatgataagtgagtgtcatctaaaagactgagactttgactacgtgagtg 116  Q
    ||||||||||||||  ||||||| ||||| |  |||| | || ||||||||||| |||| || |||||| | |||||| |||||| | |||  |||||||    
T  30696758 gagaagagagaggttgagagtgtgagatacgagaggagaaaatagagaactatggtaagagaatgtcatatgaaagaccgagactctaactgtgtgagtg 30696857  T
Q  117 aaatgatttaggattttggtttctatttgtataaaaggtatgataaattgattttct-catttgggacgggtttggatatgaatt-tgggtgggtaccta 214  Q
    | |||||||||| |||   ||||||||| ||||||| |  | ||||||||||||| | |||||||||  ||||||| ||||| ||  |||||||||| ||    
T  30696858 acatgatttagggtttgaatttctatttatataaaatgggtaataaattgattttttacatttgggataggtttgggtatgagttcggggtgggtacata 30696957  T
Q  215 tat 217  Q
    |||    
T  30696958 tat 30696960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 17 - 150
Target Start/End: Complemental strand, 35409407 - 35409274
Alignment:
Q  17 gagaagagagaggtcaagagtgtcagatatggaaggatataagagagaactatgataagtgagtgtcatctaaaagactgagactttgactacgtgagtg 116  Q
    ||||||||||||| | ||||||| ||||||||| | | | ||||  ||||||||||||||||||||||| |  |||||||||||| |||||  || ||||    
T  35409407 gagaagagagaggccgagagtgtgagatatggacgaagaaaagaatgaactatgataagtgagtgtcatatgtaagactgagactctgactgtgtaagtg 35409308  T
Q  117 aaatgatttaggattttggtttctatttgtataa 150  Q
    ||||  |||||  ||| ||||| ||||| |||||    
T  35409307 aaatagtttagagtttgggtttttatttatataa 35409274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 33 - 144
Target Start/End: Complemental strand, 40734822 - 40734711
Alignment:
Q  33 agagtgtcagatatggaaggatataagagagaactatgataagtgagtgtcatctaaaagactgagactttgactacgtgagtgaaatgatttaggattt 132  Q
    ||||||| ||||||| ||||| | || | | ||||||||||  ||||  |||| | ||||||||||||| |||||  ||||||||||||||||||| |||    
T  40734822 agagtgtgagatatgtaaggagacaaaataaaactatgatatatgagaatcatttgaaagactgagactctgactgtgtgagtgaaatgatttagggttt 40734723  T
Q  133 tggtttctattt 144  Q
    |||||| |||||    
T  40734722 tggtttttattt 40734711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 55 - 271
Target Start/End: Original strand, 40359216 - 40359434
Alignment:
Q  55 ataagagagaactatgataagtgagtgtcatctaaaagactgagactttgactacgtgagtgaaatgatttaggattttggtttctatttgtataaaagg 154  Q
    |||| |||||||| | | ||||||||||||| | | ||| ||||||| | ||| ||||| |||||||||||||  |||  |||||||||| ||||||||     
T  40359216 ataaaagagaactctaaaaagtgagtgtcatatgagagattgagactctaactgcgtgactgaaatgatttagactttgagtttctatttatataaaaga 40359315  T
Q  155 tatgataaattgattttct-catttgggacgggtttggatatgaatttg-ggtgggtacctatattcccgttatccatcctatacctgtgttttgaaatc 252  Q
    | | ||||||||||||| | |||||| ||  ||||||  ||| | || | | ||||||||||||| || ||||||||||  ||||| ||||| | |||||    
T  40359316 tgtaataaattgattttttacatttgagagaggtttgagtattagttcgagatgggtacctatatccctgttatccatctcataccggtgttctaaaatc 40359415  T
Q  253 gaggaaaactcaaactcat 271  Q
    | | |||||  ||||||||    
T  40359416 gggaaaaacctaaactcat 40359434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 33 - 93
Target Start/End: Complemental strand, 34544550 - 34544490
Alignment:
Q  33 agagtgtcagatatggaaggatataagagagaactatgataagtgagtgtcatctaaaaga 93  Q
    ||||||| |||||||||||||   ||||||||||||||| |||||| ||||||||||||||    
T  34544550 agagtgtgagatatggaaggagtaaagagagaactatgagaagtgattgtcatctaaaaga 34544490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 168 - 264
Target Start/End: Complemental strand, 13705464 - 13705367
Alignment:
Q  168 ttttctcatttgggacgggtttggatatgaatttggg-tgggtacctatattcccgttatccatcctatacctgtgttttgaaatcgaggaaaactca 264  Q
    ||||| |||||||||||||||| | ||||  || ||| ||||||||||||| ||||||| |  ||  ||||| |||||||||||||| ||||||||||    
T  13705464 ttttcacatttgggacgggtttaggtatgggttcggggtgggtacctatatacccgttacctgtctcatacccgtgttttgaaatcggggaaaactca 13705367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 110 - 267
Target Start/End: Complemental strand, 17845554 - 17845394
Alignment:
Q  110 gtgagtgaaatgatttaggattttggtttctatttgtataaaaggtatgataaattgattttct--catttgggacgggtttggatatgaatt-tgggtg 206  Q
    ||||||||||||||||||| ||   |||||||||| ||||||| | || ||||||||||||| |  |||| | ||||||||||| ||||  ||  |||||    
T  17845554 gtgagtgaaatgatttaggtttggagtttctatttatataaaaaggataataaattgatttttttacattcgagacgggtttgggtatgggttaagggtg 17845455  T
Q  207 ggtacctatattcccgttatccatcctatacctgtgttttgaaatcgaggaaaactcaaac 267  Q
    ||||| |||||  || ||| |  ||  ||||  ||||||||||||||| ||||||||||||    
T  17845454 ggtacttatatgtccattaccggtctcatactcgtgttttgaaatcgaagaaaactcaaac 17845394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 204 - 261
Target Start/End: Original strand, 37106715 - 37106772
Alignment:
Q  204 gtgggtacctatattcccgttatccatcctatacctgtgttttgaaatcgaggaaaac 261  Q
    |||||||||||||| ||||||| || ||| ||||| |||||||||||||| |||||||    
T  37106715 gtgggtacctatatacccgttacccgtcccatacccgtgttttgaaatcggggaaaac 37106772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 174 - 261
Target Start/End: Complemental strand, 24414229 - 24414141
Alignment:
Q  174 catttgggacgggtttggatatgaatttggg-tgggtacctatattcccgttatccatcctatacctgtgttttgaaatcgaggaaaac 261  Q
    |||||||||||||||||| ||||  || ||| ||||||||||||| || |||| || ||| ||||| ||||||||| |||| |||||||    
T  24414229 catttgggacgggtttgggtatgggttcggggtgggtacctatatacctgttacccgtcccatacccgtgttttgagatcggggaaaac 24414141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 174 - 261
Target Start/End: Original strand, 37999475 - 37999563
Alignment:
Q  174 catttgggacgggtttggatatgaatt-tgggtgggtacctatattcccgttatccatcctatacctgtgttttgaaatcgaggaaaac 261  Q
    |||||||||||||||||| ||||| ||  |||||||||| ||||| ||||||| || ||  ||||| ||||||||| |||| |||||||    
T  37999475 catttgggacgggtttgggtatgagttcggggtgggtacttatatacccgttacccgtctcatacccgtgttttgagatcggggaaaac 37999563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 205 - 264
Target Start/End: Original strand, 45115582 - 45115641
Alignment:
Q  205 tgggtacctatattcccgttatccatcctatacctgtgttttgaaatcgaggaaaactca 264  Q
    ||||||||||||| || |||| || ||  ||||| |||||||||||||||||||||||||    
T  45115582 tgggtacctatatacctgttacccgtctcatacccgtgttttgaaatcgaggaaaactca 45115641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 174 - 271
Target Start/End: Complemental strand, 12193924 - 12193826
Alignment:
Q  174 catttgggacgggtttggatatgaatttg-ggtgggtacctatattcccgttatccatcctatacctgtgttttgaaatcgaggaaaactcaaactcat 271  Q
    |||||||||||||| |||||||| ||| | |||||||| |||||| ||| ||| || ||| ||||| ||||| |||||||| | ||||| || ||||||    
T  12193924 catttgggacgggtatggatatggattcgaggtgggtatctatatacccattacccgtcccatacccgtgttctgaaatcgggaaaaacacatactcat 12193826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 213 - 267
Target Start/End: Original strand, 34320657 - 34320711
Alignment:
Q  213 tatattcccgttatccatcctatacctgtgttttgaaatcgaggaaaactcaaac 267  Q
    ||||| |||||||  ||||  ||||||||||||| ||||||||||||||||||||    
T  34320657 tatatccccgttagtcatctcatacctgtgttttaaaatcgaggaaaactcaaac 34320711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 174 - 259
Target Start/End: Complemental strand, 36128203 - 36128117
Alignment:
Q  174 catttgggacgggtttggatatgaatt-tgggtgggtacctatattcccgttatccatcctatacctgtgttttgaaatcgaggaaa 259  Q
    |||||||||||||||||| ||||  ||  ||||| |||||||||| ||||||| |||||| ||||| |||||| || |||| |||||    
T  36128203 catttgggacgggtttgggtatgggttcggggtgagtacctatatacccgttacccatcccatacccgtgtttcgagatcggggaaa 36128117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 158 - 266
Target Start/End: Complemental strand, 44746223 - 44746113
Alignment:
Q  158 gataaattgattttct-catttgggacgggtttggatatgaatttgg-gtgggtacctatattcccgttatccatcctatacctgtgttttgaaatcgag 255  Q
    |||||| ||||||||| |||||||||||||||||  ||||| ||||  |||||||| ||||| ||| ||| || ||| |||   |||||||||||||| |    
T  44746223 gataaagtgattttctacatttgggacgggtttgagtatgagtttgaagtgggtacatatatacccattacccgtcccatattcgtgttttgaaatcggg 44746124  T
Q  256 gaaaactcaaa 266  Q
    |||||| ||||    
T  44746123 gaaaacccaaa 44746113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 174 - 271
Target Start/End: Original strand, 45256815 - 45256913
Alignment:
Q  174 catttgggacgggtttggatatgaatttggg-tgggtacctatattcccgttatccatcctatacctgtgttttgaaatcgaggaaaactcaaactcat 271  Q
    |||||||||||||||| | ||||  || ||| ||||||| ||||| ||| ||| || ||  ||||| |||||||||||||| |||||||||| ||||||    
T  45256815 catttgggacgggtttaggtatgggttcggggtgggtacttatatacccattaaccgtctcatacccgtgttttgaaatcggggaaaactcatactcat 45256913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 261
Target Start/End: Original strand, 30846941 - 30847026
Alignment:
Q  177 ttgggacgggtttggatatgaatttggg-tgggtacctatattcccgttatccatcctatacctgtgttttgaaatcgaggaaaac 261  Q
    ||||||||||||||| ||||  || ||| ||||||||||||| ||||||| || ||| ||||| |||||| || |||| |||||||    
T  30846941 ttgggacgggtttgggtatgggttcggggtgggtacctatatacccgttacccgtcccatacccgtgtttcgagatcggggaaaac 30847026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 65
Target Start/End: Complemental strand, 4961657 - 4961609
Alignment:
Q  17 gagaagagagaggtcaagagtgtcagatatggaaggatataagagagaa 65  Q
    |||||||||||| || ||||||| ||||||||||||| | |||||||||    
T  4961657 gagaagagagagatcgagagtgtgagatatggaaggagaaaagagagaa 4961609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 204 - 260
Target Start/End: Complemental strand, 37472825 - 37472769
Alignment:
Q  204 gtgggtacctatattcccgttatccatcctatacctgtgttttgaaatcgaggaaaa 260  Q
    ||||||||||| || ||||||| || ||| ||||| |||||||||||||| ||||||    
T  37472825 gtgggtacctaaatacccgttacccgtcccatacccgtgttttgaaatcggggaaaa 37472769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 267
Target Start/End: Original strand, 43371555 - 43371639
Alignment:
Q  184 gggtttggatatgaatttggg-tgggtacctatattcccgttatccatcctatacctgtgttttgaaatcgaggaaaactcaaac 267  Q
    |||||||| ||||| |||||| ||||||| ||||| ||||||| || |||  |||| || |||| |||||| |||||||||||||    
T  43371555 gggtttgggtatgagtttggggtgggtacatatatccccgttacccgtcccgtacccgtattttaaaatcggggaaaactcaaac 43371639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 73; Significance: 3e-33; HSPs: 38)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 17 - 173
Target Start/End: Complemental strand, 42729199 - 42729043
Alignment:
Q  17 gagaagagagaggtcaagagtgtcagatatggaaggatataagagagaactatgataagtgagtgtcatctaaaagactgagactttgactacgtgagtg 116  Q
    ||||||||||||  | ||||||| | ||||||||||| | ||||||||||||||||||||| |||| |||| ||||||||||||| |||||  |||||||    
T  42729199 gagaagagagagaccgagagtgtgatatatggaaggagacaagagagaactatgataagtgggtgttatctgaaagactgagactctgactgtgtgagtg 42729100  T
Q  117 aaatgatttaggattttggtttctatttgtataaaaggtatgataaattgattttct 173  Q
    |||||||||||  | |  |||||||||| ||||||||| |||||||||| |||||||    
T  42729099 aaatgatttagtgtataagtttctatttatataaaagggatgataaatttattttct 42729043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 18 - 173
Target Start/End: Original strand, 13692479 - 13692635
Alignment:
Q  18 agaagagagaggtcaagagtgtcagatatggaaggatataagagagaactatgataagtgagtgtcatctaaaagactgagactttgactacgtgagtga 117  Q
    |||||||||||| | ||||||| ||||||||||||| | ||||||||||||| ||||||||||||| ||| ||||| | ||||| | | |  ||| ||||    
T  13692479 agaagagagaggccgagagtgtgagatatggaaggagaaaagagagaactataataagtgagtgtcgtctgaaagagtaagactctaattgtgtgggtga 13692578  T
Q  118 aatgatttaggattttggtttctatttgtataaaaggtatgat-aaattgattttct 173  Q
    ||||||||||| ||||||||||||||| ||||||||| || || |||||||||||||    
T  13692579 aatgatttagggttttggtttctatttatataaaagggataataaaattgattttct 13692635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 17 - 228
Target Start/End: Complemental strand, 41477207 - 41476994
Alignment:
Q  17 gagaagagagaggtcaagagtgtcagatatggaaggatataagagagaactatgataagtgagtgtcatctaaaagactgagactttgactacgtgagtg 116  Q
    ||||||||||||| | ||||||| | ||||| ||||  |||| |||||| ||||||||||| ||||||||| |||||| ||||||||||||  |||| ||    
T  41477207 gagaagagagaggccgagagtgtgaaatatgaaaggggataaaagagaattatgataagtgggtgtcatctgaaagacggagactttgactgtgtgaatg 41477108  T
Q  117 aaatgatttaggattttggtttctatttgtataaaaggtatgataaattgattttct-catttgggacgggtttggatatgaatt-tgggtgggtaccta 214  Q
    |||| ||||||| |||   ||||| ||| ||||||| |  | | ||||||||||||| | || ||||||||||||| |||| |||  |||||||||| ||    
T  41477107 aaataatttagggtttccatttctctttatataaaaagggtaacaaattgattttctgctttcgggacgggtttgggtatggattcggggtgggtacata 41477008  T
Q  215 tattcccgttatcc 228  Q
    ||| | ||||||||    
T  41477007 tatccacgttatcc 41476994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 41 - 173
Target Start/End: Original strand, 36421624 - 36421756
Alignment:
Q  41 agatatggaaggatataagagagaactatgataagtgagtgtcatctaaaagactgagactttgactacgtgagtgaaatgatttaggattttggtttct 140  Q
    ||||||| ||||| | |||||||||||||||||||||| || ||||| ||||| ||||||| |||||  |||| |||||||||||||  ||   |||| |    
T  36421624 agatatgaaaggagaaaagagagaactatgataagtgattgccatctgaaagattgagactctgactgtgtgaatgaaatgatttagagttcgagttttt 36421723  T
Q  141 atttgtataaaaggtatgataaattgattttct 173  Q
    |||| ||||| ||| || |||||||||||||||    
T  36421724 atttatataagagggataataaattgattttct 36421756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 23 - 196
Target Start/End: Original strand, 8880288 - 8880462
Alignment:
Q  23 agagaggtcaagagtgtcagatatggaaggatataagagagaactatgataagtgagtgtcatctaaaagactgagactttgactacgtgagtgaaatga 122  Q
    ||||| ||| ||| ||| ||||||||||||| | ||||||||| |||||||| | ||||||| || |||||||| |||| | |||  |||||||||||||    
T  8880288 agagaagtcgagattgtgagatatggaaggagaaaagagagaattatgataaataagtgtcaactgaaagactgcgactctaactttgtgagtgaaatga 8880387  T
Q  123 tttaggattttggtttctatttgtataaaaggtatgataaattga-ttttctcatttgggacgggtttggatatg 196  Q
    ||||   |||  |||||||||| || ||||||  | ||||||| | ||||  |||||||||||||||||| ||||    
T  8880388 tttaaagtttgagtttctatttataaaaaaggggtaataaatttatttttagcatttgggacgggtttgggtatg 8880462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 33 - 153
Target Start/End: Original strand, 39219108 - 39219228
Alignment:
Q  33 agagtgtcagatatggaaggatataagagagaactatgataagtgagtgtcatctaaaagactgagactttgactacgtgagtgaaatgatttaggattt 132  Q
    |||||||  |||||| ||||| | | |||| |||||||||||||||||||||| | ||| | ||||||| |||||  ||||| ||||||||||||| |||    
T  39219108 agagtgtgcgatatgaaaggagaaaggagataactatgataagtgagtgtcatatgaaaaaatgagactgtgactgtgtgagcgaaatgatttagggttt 39219207  T
Q  133 tggtttctatttgtataaaag 153  Q
      |||||||||| ||||||||    
T  39219208 gagtttctatttatataaaag 39219228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 175 - 271
Target Start/End: Complemental strand, 44615571 - 44615474
Alignment:
Q  175 atttgggacgggtttggatatgaatttggg-tgggtacctatattcccgttatccatcctatacctgtgttttgaaatcgaggaaaactcaaactcat 271  Q
    ||||||||||||||||| ||||| |||||| ||||||||||||| || |||| || ||| ||||| ||||||| |||||  ||||||| |||||||||    
T  44615571 atttgggacgggtttgggtatgagtttggggtgggtacctatatacctgttacccgtcccatacccgtgtttttaaatcagggaaaacccaaactcat 44615474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 175 - 271
Target Start/End: Original strand, 44792998 - 44793095
Alignment:
Q  175 atttgggacgggtttggatatgaatttggg-tgggtacctatattcccgttatccatcctatacctgtgttttgaaatcgaggaaaactcaaactcat 271  Q
    ||||||||||||||||| ||||| |||||| ||||||||||||| || |||| || ||| ||||| ||||||| |||||  ||||||| |||||||||    
T  44792998 atttgggacgggtttgggtatgagtttggggtgggtacctatatacctgttacccgtcccatacccgtgtttttaaatcagggaaaacccaaactcat 44793095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 17 - 152
Target Start/End: Complemental strand, 45460299 - 45460163
Alignment:
Q  17 gagaagagagaggtcaagagtgtcagatatggaaggatataagagagaactatgataagtgagtgtcatctaaaagactgagactttgactacgtgagtg 116  Q
    ||||||||||||||| ||||||| |||||   ||||| | |||||| || || |||||||||||||||||| ||||| ||| |||  || |  |||||||    
T  45460299 gagaagagagaggtcgagagtgtgagatacataaggagaaaagagaaaattacgataagtgagtgtcatctgaaagattgaaactgcgattgtgtgagtg 45460200  T
Q  117 aaatgattta-ggattttggtttctatttgtataaaa 152  Q
    |||||||||| || |||  |||||||||| |||||||    
T  45460199 aaatgatttaggggtttatgtttctatttatataaaa 45460163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 17 - 167
Target Start/End: Original strand, 25181037 - 25181188
Alignment:
Q  17 gagaagagagaggtcaagagtgtcagatatggaaggatataagagagaactatgataagtgagtgtcatctaaaagactgagactttgactacgtgagtg 116  Q
    ||||| ||||||| |  |||||| ||||||||||||| | |||| |||| | | |||||||||| |||||| ||||||  ||||| | |||| |||||||    
T  25181037 gagaaaagagaggccgggagtgtgagatatggaaggagaaaagaaagaattgtaataagtgagtatcatctgaaagacaaagactctaactatgtgagtg 25181136  T
Q  117 aaatgatttagga-ttttggtttctatttgtataaaaggtatgataaattga 167  Q
    |||| ||||| || ||| ||||||||||| |||| |||| ||  ||||||||    
T  25181137 aaattatttaagagtttaggtttctatttatatagaagggatagtaaattga 25181188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 174 - 264
Target Start/End: Complemental strand, 40087560 - 40087470
Alignment:
Q  174 catttgggacgggtttggatatgaatttggg-tgggtacctatattcccgttatccatcctatacctgtgttttgaaatcgaggaaaactca 264  Q
    |||||||||||||| ||  ||||| || ||| |||||||||||||||||||||  ||||| |||||||||||||| ||||| ||||||||||    
T  40087560 catttgggacgggtatgagtatgagttcggggtgggtacctatattcccgttactcatcccatacctgtgttttg-aatcggggaaaactca 40087470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 202 - 271
Target Start/End: Complemental strand, 35936897 - 35936828
Alignment:
Q  202 gggtgggtacctatattcccgttatccatcctatacctgtgttttgaaatcgaggaaaactcaaactcat 271  Q
    |||||||||||||||| |||||||||| ||| ||||  ||| |||||||||| ||||||| |||||||||    
T  35936897 gggtgggtacctatatacccgttatccgtcccatactcgtgatttgaaatcggggaaaacccaaactcat 35936828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 17 - 152
Target Start/End: Original strand, 16903355 - 16903484
Alignment:
Q  17 gagaagagagaggtcaagagtgtcagatatggaaggatataagagagaactatgataagtgagtgtcatctaaaagactgagactttgactacgtgagtg 116  Q
    ||||||| | ||||| ||||||| | ||||||||||| | |||||||||||||||||||||| ||||      |||||||| ||| ||| |  |||||||    
T  16903355 gagaagaaaaaggtcgagagtgtgaaatatggaaggagaaaagagagaactatgataagtgattgtc------aagactgaaactctgattgtgtgagtg 16903448  T
Q  117 aaatgatttaggattttggtttctatttgtataaaa 152  Q
    |||| ||||||| |||  |||| ||||| |||||||    
T  16903449 aaataatttagggtttgagtttatatttatataaaa 16903484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 33 - 101
Target Start/End: Complemental strand, 25155066 - 25154998
Alignment:
Q  33 agagtgtcagatatggaaggatataagagagaactatgataagtgagtgtcatctaaaagactgagact 101  Q
    ||||||| |||| || ||||| | || ||||||||||||||||||||||||||||||| ||| ||||||    
T  25155066 agagtgtgagatttgaaaggagaaaaaagagaactatgataagtgagtgtcatctaaatgaccgagact 25154998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 204 - 264
Target Start/End: Complemental strand, 34060091 - 34060031
Alignment:
Q  204 gtgggtacctatattcccgttatccatcctatacctgtgttttgaaatcgaggaaaactca 264  Q
    |||||||||||||| || ||||||| ||  ||||| |||||||||||||||||||||||||    
T  34060091 gtgggtacctatatacctgttatccgtctcatacccgtgttttgaaatcgaggaaaactca 34060031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 174 - 261
Target Start/End: Complemental strand, 36187317 - 36187229
Alignment:
Q  174 catttgggacgggtttggatatgaattt-gggtgggtacctatattcccgttatccatcctatacctgtgttttgaaatcgaggaaaac 261  Q
    |||||||||||||||||| ||||  ||  |||||||||||||||| ||||||| || ||| ||||| ||||||||| |||| |||||||    
T  36187317 catttgggacgggtttgggtatgggttcagggtgggtacctatatacccgttacccgtcccatacccgtgttttgagatcggggaaaac 36187229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 146 - 271
Target Start/End: Original strand, 13798201 - 13798328
Alignment:
Q  146 tataaaaggtatgataaattgattttct-catttgggacgggtttggatatgaatttggg-tgggtacctatattcccgttatccatcctatacctgtgt 243  Q
    |||||||||  | ||||||||||||||| ||||| ||| |||||| | |||||||||||| ||| ||  ||||| | ||||| |||||  ||||| ||||    
T  13798201 tataaaaggggtaataaattgattttctacatttaggatgggtttaggtatgaatttggggtggataaatatatcctcgttacccatctcatacccgtgt 13798300  T
Q  244 tttgaaatcgaggaaaactcaaactcat 271  Q
    |||||||||| | ||||| |||||||||    
T  13798301 tttgaaatcgggaaaaacccaaactcat 13798328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 17 - 84
Target Start/End: Original strand, 14890996 - 14891063
Alignment:
Q  17 gagaagagagaggtcaagagtgtcagatatggaaggatataagagagaactatgataagtgagtgtca 84  Q
    ||||||||||||||| ||| ||| ||||||||||||| | ||||||||||||| |||| | |||||||    
T  14890996 gagaagagagaggtcgagattgtgagatatggaaggagaaaagagagaactattataaataagtgtca 14891063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 174 - 264
Target Start/End: Original strand, 28297926 - 28298017
Alignment:
Q  174 catttgggacgggtttggatatgaatttggg-tgggtacctatattcccgttatccatcctatacctgtgttttgaaatcgaggaaaactca 264  Q
    |||||||||||||||||| ||||  || ||| ||||||||||||| ||||||| || ||| ||||| |||||| || |||| ||||||||||    
T  28297926 catttgggacgggtttgggtatgggttcggggtgggtacctatatacccgttacccgtcccatacccgtgtttcgagatcggggaaaactca 28298017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 253
Target Start/End: Complemental strand, 5293665 - 5293422
Alignment:
Q  17 gagaagagagaggtcaagagtgtcagatatggaaggatataagagagaactatgataagtgagtgtcatctaaaagactgagactttgactacgtgagtg 116  Q
    ||||| ||||||||| ||| ||| |||||||||| || | ||||||||||||| |||||||  |||||    |||| |||||||| || ||  |||| ||    
T  5293665 gagaatagagaggtcgagattgtgagatatggaatgaaaaaagagagaactatcataagtgtctgtcaatcgaaagtctgagactctggctgtgtgattg 5293566  T
Q  117 aaatgatttaggattttggtttctatttgtataaaaggtatgataaattgattttc-tcatttgggacgggtttggatatgaatttgg-------gtggg 208  Q
    ||||  ||| |  |||  |||||||||| ||||||||  || ||||||||| ||||  |||| |||||| |||||| |||||||||||       |||||    
T  5293565 aaatagttttgagtttgagtttctatttatataaaagtgataataaattgactttcaacattcgggacgagtttgg-tatgaatttgggtttggagtggg 5293467  T
Q  209 tacctatattcccgttatccatcctatacctgtgttttgaaatcg 253  Q
    ||| ||||| || ||||||| |||| |||| || |||||||||||    
T  5293466 tacatatatccctgttatccgtcctgtaccagtattttgaaatcg 5293422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 202 - 271
Target Start/End: Complemental strand, 9982958 - 9982889
Alignment:
Q  202 gggtgggtacctatattcccgttatccatcctatacctgtgttttgaaatcgaggaaaactcaaactcat 271  Q
    |||||||||||||||| | ||||| |||||| || || |||||||||||| | |||||| ||||||||||    
T  9982958 gggtgggtacctatatactcgttacccatcccattcccgtgttttgaaattggggaaaattcaaactcat 9982889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 17 - 74
Target Start/End: Original strand, 14902974 - 14903031
Alignment:
Q  17 gagaagagagaggtcaagagtgtcagatatggaaggatataagagagaactatgataa 74  Q
    ||||||||||||| | ||| ||| ||||||||||||| | ||||||||||||||||||    
T  14902974 gagaagagagaggccgagattgtgagatatggaaggagaaaagagagaactatgataa 14903031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 202 - 271
Target Start/End: Complemental strand, 42707905 - 42707836
Alignment:
Q  202 gggtgggtacctatattcccgttatccatcctatacctgtgttttgaaatcgaggaaaactcaaactcat 271  Q
    ||||| |||| ||||||||||||| || ||| ||||| ||||||||||||||  ||||||||| ||||||    
T  42707905 gggtgagtacttatattcccgttacccgtcccatacccgtgttttgaaatcggagaaaactcatactcat 42707836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 112 - 267
Target Start/End: Complemental strand, 47645019 - 47644863
Alignment:
Q  112 gagtgaaatgatttaggattttggtttctatttgtataaaaggtatgataaattgat-tttctcatttgggacgggtttggatatgaatt-tgggtgggt 209  Q
    ||||||||||||||||||| |  |||||||||| ||||||||| || |||||||  | |||  |||| |||||| || ||||||||| ||  |||| |||    
T  47645019 gagtgaaatgatttaggatctgagtttctatttatataaaagggataataaattattattttacattcgggacgagtatggatatgagttcggggtaggt 47644920  T
Q  210 acctatattcccgttatccatcctatacctgtgttttgaaatcgaggaaaactcaaac 267  Q
    || | || |||| |||||| |||  |||||||||||||| |||| ||||||| |||||    
T  47644919 acttcta-tcccattatccgtcccgtacctgtgttttgagatcggggaaaacccaaac 47644863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 174 - 261
Target Start/End: Original strand, 29936408 - 29936496
Alignment:
Q  174 catttgggacgggtttggatatgaatttggg-tgggtacctatattcccgttatccatcctatacctgtgttttgaaatcgaggaaaac 261  Q
    |||||||||||||||||| ||||  || ||| ||||||||||||| ||||||| || ||| ||||| || |||||| |||| |||||||    
T  29936408 catttgggacgggtttgggtatgggttcggggtgggtacctatatacccgttacccgtcccatacccgtattttgagatcggggaaaac 29936496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 202 - 261
Target Start/End: Complemental strand, 3628053 - 3627994
Alignment:
Q  202 gggtgggtacctatattcccgttatccatcctatacctgtgttttgaaatcgaggaaaac 261  Q
    ||||||||||||| || ||||||| || ||| ||||| |||||||||||||| |||||||    
T  3628053 gggtgggtacctacatacccgttacccgtcccatacccgtgttttgaaatcggggaaaac 3627994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 174 - 264
Target Start/End: Complemental strand, 49250870 - 49250779
Alignment:
Q  174 catttgggacgggtttggatatgaatttg-ggtgggtacctatattcccgttatccatcctatacctgtgttttgaaatcgaggaaaactca 264  Q
    |||||||||||||||||| ||||  || | ||||| ||||||||| ||| ||| || ||| ||||| ||||||||| |||| ||||||||||    
T  49250870 catttgggacgggtttgggtatgggttcgaggtggatacctatatacccattacccgtcccatacccgtgttttgagatcggggaaaactca 49250779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 205 - 271
Target Start/End: Original strand, 24710871 - 24710937
Alignment:
Q  205 tgggtacctatattcccgttatccatcctatacctgtgttttgaaatcgaggaaaactcaaactcat 271  Q
    ||||||||||||| ||||||| || ||| ||||| ||||||||| |||| ||||||| || ||||||    
T  24710871 tgggtacctatatacccgttacccgtcccatacccgtgttttgagatcggggaaaacccatactcat 24710937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 174 - 271
Target Start/End: Complemental strand, 29871382 - 29871284
Alignment:
Q  174 catttgggacgggtttggatatgaattt-gggtgggtacctatattcccgttatccatcctatacctgtgttttgaaatcgaggaaaactcaaactcat 271  Q
    |||| ||||||||||||| ||||| ||  |||||||||||||||| || |||| |  ||| |||||  |||||||||||||  |||||| |||||||||    
T  29871382 cattcgggacgggtttgggtatgagttcagggtgggtacctatataccagttacctgtcccatacccatgttttgaaatcggagaaaacccaaactcat 29871284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 202 - 271
Target Start/End: Original strand, 36617381 - 36617451
Alignment:
Q  202 gggtgggtacctatattcccgttatccatcctatacctgtgtttt-gaaatcgaggaaaactcaaactcat 271  Q
    |||||||||||||||||| |||||| | |||  ||||  |||||| ||||||| |||||||||||||||||    
T  36617381 gggtgggtacctatattctcgttattcgtcccgtacccatgtttttgaaatcgtggaaaactcaaactcat 36617451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 202 - 252
Target Start/End: Complemental strand, 50426729 - 50426679
Alignment:
Q  202 gggtgggtacctatattcccgttatccatcctatacctgtgttttgaaatc 252  Q
    |||||||||||||||| |||||||||| ||  ||||| |||||||||||||    
T  50426729 gggtgggtacctatatacccgttatccgtctcatacccgtgttttgaaatc 50426679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 126
Target Start/End: Complemental strand, 5290485 - 5290448
Alignment:
Q  89 aaagactgagactttgactacgtgagtgaaatgattta 126  Q
    |||||||||||||||||||| |||||| ||||||||||    
T  5290485 aaagactgagactttgactatgtgagttaaatgattta 5290448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 267
Target Start/End: Complemental strand, 16433231 - 16433170
Alignment:
Q  206 gggtacctatattcccgttatccatcctatacctgtgttttgaaatcgaggaaaactcaaac 267  Q
    ||||||||||||  |||||| || ||| ||||| ||||||||||||||  ||||||||||||    
T  16433231 gggtacctatatatccgttacccgtcccatacccgtgttttgaaatcggagaaaactcaaac 16433170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 271
Target Start/End: Original strand, 34085256 - 34085325
Alignment:
Q  202 gggtgggtacctatattcccgttatccatcctatacctgtgttttgaaatcgaggaaaactcaaactcat 271  Q
    |||||||||| ||||  ||||||| |||||| ||||  |||||||||||||| | ||||| |||||||||    
T  34085256 gggtgggtacatataaccccgttacccatcccatactcgtgttttgaaatcgggaaaaacccaaactcat 34085325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 101
Target Start/End: Original strand, 11198278 - 11198361
Alignment:
Q  17 gagaagagagaggtcaagagtgtcagatatggaaggatataagagagaactatgataagtgagtgtcatctaaaagactgagact 101  Q
    ||||||| ||||  |||||| || ||||||| ||||| | |||||||||||||  ||||| |||||||| ||||||||| |||||    
T  11198278 gagaagatagagaccaagagcgtgagatatgaaaggaga-aagagagaactatactaagtaagtgtcatataaaagactaagact 11198361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 174 - 253
Target Start/End: Original strand, 12495002 - 12495082
Alignment:
Q  174 catttgggacgggtttggatatgaatttg-ggtgggtacctatattcccgttatccatcctatacctgtgttttgaaatcg 253  Q
    |||||||||||||||||| ||||  || | ||||||||||||||| |||||||  | ||| ||| | ||||||||||||||    
T  12495002 catttgggacgggtttgggtatgggttcgaggtgggtacctatatacccgttacacgtcccatatccgtgttttgaaatcg 12495082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 174 - 261
Target Start/End: Complemental strand, 23490868 - 23490780
Alignment:
Q  174 catttgggacgggtttggatatgaatttggg-tgggtacctatattcccgttatccatcctatacctgtgttttgaaatcgaggaaaac 261  Q
    |||||||||||||||| | ||||  || ||| ||||||||||||| ||||||| || ||| ||||| |||||| || |||| |||||||    
T  23490868 catttgggacgggttttggtatgggttcggggtgggtacctatatacccgttacccgtcccatacccgtgtttcgagatcggggaaaac 23490780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 57 - 97
Target Start/End: Complemental strand, 48125887 - 48125847
Alignment:
Q  57 aagagagaactatgataagtgagtgtcatctaaaagactga 97  Q
    ||||||||||||||| |||||| |||||||| |||||||||    
T  48125887 aagagagaactatgacaagtgaatgtcatctgaaagactga 48125847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0244 (Bit Score: 71; Significance: 4e-32; HSPs: 1)
Name: scaffold0244
Description:

Target: scaffold0244; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 15 - 173
Target Start/End: Complemental strand, 4837 - 4679
Alignment:
Q  15 tagagaagagagaggtcaagagtgtcagatatggaaggatataagagagaactatgataagtgagtgtcatctaaaagactgagactttgactacgtgag 114  Q
    ||||||||||||||  | | ||||| | ||||||||||| | |||||||||||||||||||||||||| ||||||||||| | |||| |||||  |||||    
T  4837 tagagaagagagagaccgatagtgtgaaatatggaaggaaaaaagagagaactatgataagtgagtgttatctaaaagaccgtgactctgactgtgtgag 4738  T
Q  115 tgaaatgatttaggattttggtttctatttgtataaaaggtatgataaattgattttct 173  Q
    |||||||||||||  ||||| ||||||||| |||||||||  | |||| ||||||||||    
T  4737 tgaaatgatttagagttttgatttctatttatataaaaggggttataatttgattttct 4679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 71; Significance: 4e-32; HSPs: 28)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 17 - 266
Target Start/End: Original strand, 9402422 - 9402672
Alignment:
Q  17 gagaagagagaggtcaagagtgtcagatatggaaggatataagagagaactatgataagtgagtgtcatctaaaagactgagactttgactacgtgagtg 116  Q
    ||||||||||||| | | | ||| ||||||||||||| | |||||||||||||||||||||||||| || | ||||||  ||||| |||||  |||||||    
T  9402422 gagaagagagaggccgaaaatgtgagatatggaaggagaaaagagagaactatgataagtgagtgtgatatgaaagacctagactctgactgtgtgagtg 9402521  T
Q  117 aaatgatttaggattttggtttctatttgtataaaaggtatgataaattgattttct-catttgggacgggtttggatatgaatttgggtgggtacctat 215  Q
    |||||||||||| ||| ||||||||||| |||||| ||  |  |||||||||||||| |||| | ||| ||||||  ||||  || ||||||  ||||||    
T  9402522 aaatgatttagggtttgggtttctatttatataaatggggtactaaattgattttctacattcgagacaggtttgagtatgggttcgggtggacacctat 9402621  T
Q  216 attcccgttatccatcctatacctgtgttttgaaatcgaggaaaactcaaa 266  Q
    || |  |||| || |||| ||||  ||||||||||||| ||||||| ||||    
T  9402622 atccatgttacccgtcctgtacccatgttttgaaatcggggaaaacccaaa 9402672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 17 - 150
Target Start/End: Complemental strand, 34346269 - 34346136
Alignment:
Q  17 gagaagagagaggtcaagagtgtcagatatggaaggatataagagagaactatgataagtgagtgtcatctaaaagactgagactttgactacgtgagtg 116  Q
    ||||||| ||||| | ||| ||| ||||||||||| | | |||| ||||||||||||||||| | |||||||||||||||||||| |||||  |||||||    
T  34346269 gagaagaaagaggccgagaatgtgagatatggaagaagaaaagatagaactatgataagtgactctcatctaaaagactgagactctgactgtgtgagtg 34346170  T
Q  117 aaatgatttaggattttggtttctatttgtataa 150  Q
    |||||||||||| ||| ||||||||||| |||||    
T  34346169 aaatgatttagggtttgggtttctatttatataa 34346136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 35 - 271
Target Start/End: Original strand, 20348916 - 20349153
Alignment:
Q  35 agtgtcagatatggaaggatataagagagaactatgataagtgagtgtcatctaaaagactgagactttgactacgtgagtgaaatgatttaggattttg 134  Q
    ||||| ||||||||||||| | |||||||||||||||||||| |||||||||| |||| |  ||||| ||| |  ||||||||| ||||||||| |||      
T  20348916 agtgtgagatatggaaggagaaaagagagaactatgataagtaagtgtcatctgaaagtccaagactctgagt--gtgagtgaagtgatttagggtttga 20349013  T
Q  135 gtttcta-tttgtataaaaggtatgataaattgattttct-catttgggacgggtttggatatgaatt-tgggtgggtacctatattcccgttatccatc 231  Q
    |||| || ||| ||||||| || | ||||||| ||||| | ||||||  |||| ||||| ||||| ||  |||||||||||||||| |||||||  | ||    
T  20349014 gtttatattttatataaaaagtgtaataaattaattttttacatttgcaacggatttgggtatgagttcggggtgggtacctatatccccgttactcgtc 20349113  T
Q  232 ctatacctgtgttttgaaatcgaggaaaactcaaactcat 271  Q
    | ||||| |||||||||||||| ||||||  |||||||||    
T  20349114 ccatacccgtgttttgaaatcggggaaaatccaaactcat 20349153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 17 - 126
Target Start/End: Complemental strand, 2126876 - 2126767
Alignment:
Q  17 gagaagagagaggtcaagagtgtcagatatggaaggatataagagagaactatgataagtgagtgtcatctaaaagactgagactttgactacgtgagtg 116  Q
    ||||| ||||||| ||||||||| ||||||||||||| | |||||||||||||||||| ||||||| |||||||| || |||||||| |||  || ||||    
T  2126876 gagaaaagagaggccaagagtgtgagatatggaaggagaaaagagagaactatgataactgagtgtgatctaaaataccgagactttaactctgtaagtg 2126777  T
Q  117 aaatgattta 126  Q
    ||||||||||    
T  2126776 aaatgattta 2126767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 20 - 190
Target Start/End: Complemental strand, 1948043 - 1947872
Alignment:
Q  20 aagagagaggtcaagagtgtcagatatggaaggatataagagagaactatgataagtgagtgtcatctaaaagactgagactttgactacgtgagtgaaa 119  Q
    |||||||||||||||| ||| ||||||| ||| | | ||||| ||||||||||||||||||||||||| |||| | || ||| |||||  ||||||  ||    
T  1948043 aagagagaggtcaagattgtgagatatgaaagtagaaaagagggaactatgataagtgagtgtcatctgaaagtcagatactctgactgtgtgagtataa 1947944  T
Q  120 tgatttaggattttggtttctatttgtataaaaggtatgataaattgattttct-catttgggacgggtttg 190  Q
    ||| ||||| ||| | ||| ||||| |||||||||  | ||||||||||||||| ||||||| ||| |||||    
T  1947943 tgacttagggtttggatttttatttatataaaaggggtaataaattgattttctacatttggaacgagtttg 1947872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 18 - 144
Target Start/End: Complemental strand, 8321049 - 8320923
Alignment:
Q  18 agaagagagaggtcaagagtgtcagatatggaaggatataagagagaactatgataagtgagtgtcatctaaaagactgagactttgactacgtgagtga 117  Q
    ||||||| |||||||||||||| ||||||||| | | | || ||| ||||||||||||||| |||| ||| |||||| |||||| |||||  || |||||    
T  8321049 agaagagggaggtcaagagtgtgagatatggacgaagaaaatagataactatgataagtgaatgtcgtctgaaagaccgagactctgactgtgtaagtga 8320950  T
Q  118 aatgatttaggattttggtttctattt 144  Q
    ||||||||||| |||  ||||||||||    
T  8320949 aatgatttagggtttaagtttctattt 8320923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 17 - 152
Target Start/End: Original strand, 14321705 - 14321835
Alignment:
Q  17 gagaagagagaggtcaagagtgtcagatatggaaggatataagagagaactatgataagtgagtgtcatctaaaagactgagactttgactacgtgagtg 116  Q
    |||||||||||||   ||||||| ||||||| ||||| | || |||||| |||||||||||| |||||||| |||||  ||||||||| | |||||||||    
T  14321705 gagaagagagagg---agagtgtgagatatgaaaggagaaaa-agagaattatgataagtgattgtcatcttaaagaacgagactttgtc-acgtgagtg 14321799  T
Q  117 aaatgatttaggattttggtttctatttgtataaaa 152  Q
    |||||||||| |||||  |||||||||| |||||||    
T  14321800 aaatgatttaagatttgagtttctatttatataaaa 14321835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 58 - 261
Target Start/End: Original strand, 13768946 - 13769151
Alignment:
Q  58 agagagaactatgataagtgagtgtcatctaaaagactgagactttgactacgtgagtgaaatgatttaggattttggtttctatttgtataaaaggtat 157  Q
    |||||||||| ||| ||||||||||||| | | |||  |||| | |||||  || | |||||| ||||| | |||  ||||| |||| |||||||||  |    
T  13768946 agagagaactctgagaagtgagtgtcatatgagagatggagaatctgactgtgttactgaaataatttatggtttgagtttcaatttatataaaaggagt 13769045  T
Q  158 gataaattgattttct-catttgggacgggtttggatatgaatt-tgggtgggtacctatattcccgttatccatcctatacctgtgttttgaaatcgag 255  Q
     ||||||||||||||| ||||  |||||||||||||||||  || |||||||||||||||||  |||||| || ||| |||||  ||||||||| ||| |    
T  13769046 aataaattgattttctacattcaggacgggtttggatatgggttctgggtgggtacctatatgtccgttacccgtcccatacccatgttttgaagtcggg 13769145  T
Q  256 gaaaac 261  Q
    ||||||    
T  13769146 gaaaac 13769151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 17 - 108
Target Start/End: Original strand, 24221449 - 24221540
Alignment:
Q  17 gagaagagagaggtcaagagtgtcagatatggaaggatataagagagaactatgataagtgagtgtcatctaaaagactgagactttgacta 108  Q
    |||||||||||||   ||||||| || ||||||| || | |||||||||||| |||||||||||||||||| ||||||| ||||| ||||||    
T  24221449 gagaagagagaggctgagagtgtgagctatggaacgagaaaagagagaactacgataagtgagtgtcatcttaaagactaagactctgacta 24221540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 174 - 264
Target Start/End: Original strand, 27534675 - 27534766
Alignment:
Q  174 catttgggacgggtttggatatgaatttggg-tgggtacctatattcccgttatccatcctatacctgtgttttgaaatcgaggaaaactca 264  Q
    |||||||||||||||||| |||| ||| ||| ||||||||||||| ||||||| || ||| ||||| |||||| || |||| ||||||||||    
T  27534675 catttgggacgggtttgggtatggattcggggtgggtacctatatacccgttacccgtcccatacccgtgtttcgagatcggggaaaactca 27534766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 167 - 271
Target Start/End: Complemental strand, 12678199 - 12678093
Alignment:
Q  167 attttctcattt-gggacgggtttggatatgaattt-gggtgggtacctatattcccgttatccatcctatacctgtgttttgaaatcgaggaaaactca 264  Q
    ||||||||| || ||||||||||||| ||||  ||  |||||||||||||||| ||| ||| || ||| |||||||||| ||||||||| ||||||| ||    
T  12678199 attttctcaattcgggacgggtttgggtatgggttcagggtgggtacctatataccctttacccgtcccatacctgtgtcttgaaatcggggaaaacgca 12678100  T
Q  265 aactcat 271  Q
    |||||||    
T  12678099 aactcat 12678093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 160 - 271
Target Start/End: Complemental strand, 256604 - 256491
Alignment:
Q  160 taaattgattttct-catttgggacgggtttggatatgaatttggg-tgggtacctatattcccgttatccatcctatacctgtgttttgaaatcgagga 257  Q
    |||||||||||||| ||||| ||| |||||||| ||||  |||||| ||||||||||||| ||| ||| || ||   ||||  ||||||||||||| |||    
T  256604 taaattgattttctacatttaggaggggtttgggtatgggtttggggtgggtacctatatgcccattacccgtctcgtacccatgttttgaaatcgggga 256505  T
Q  258 aaactcaaactcat 271  Q
    ||||||||||||||    
T  256504 aaactcaaactcat 256491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 202 - 267
Target Start/End: Complemental strand, 14410923 - 14410858
Alignment:
Q  202 gggtgggtacctatattcccgttatccatcctatacctgtgttttgaaatcgaggaaaactcaaac 267  Q
    |||||||||||||||| ||||||| || ||| ||||| |||||||||||||  |||||||||||||    
T  14410923 gggtgggtacctatatacccgttacccgtcccatacccgtgttttgaaatctgggaaaactcaaac 14410858  T

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Target: chr6; HSP #14
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 174 - 261
Target Start/End: Complemental strand, 3484020 - 3483932
Alignment:
Q  174 catttgggacgggtttggatatgaatttggg-tgggtacctatattcccgttatccatcctatacctgtgttttgaaatcgaggaaaac 261  Q
    |||||||||||||||||| ||||  || ||| ||||||||||||| ||||||| |||||| ||||| |||||| || |||| |||||||    
T  3484020 catttgggacgggtttgggtatgggttcggggtgggtacctatatacccgttacccatcccatacccgtgtttcgagatcggggaaaac 3483932  T

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Target: chr6; HSP #15
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 174 - 261
Target Start/End: Complemental strand, 5863480 - 5863392
Alignment:
Q  174 catttgggacgggtttggatatgaatttg-ggtgggtacctatattcccgttatccatcctatacctgtgttttgaaatcgaggaaaac 261  Q
    |||||||||||||||||| ||||  || | |||||||| |||||| ||||||| || ||| ||||| |||||||||||||| |||||||    
T  5863480 catttgggacgggtttgggtatgggttcgaggtgggtatctatatacccgttacccgtcccatacccgtgttttgaaatcggggaaaac 5863392  T

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Target: chr6; HSP #16
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 17 - 165
Target Start/End: Complemental strand, 10925698 - 10925550
Alignment:
Q  17 gagaagagagaggtcaagagtgtcagatatggaaggatataagagagaactatgataagtgagtgtcatctaaaagactgagactttgactacgtgagtg 116  Q
    ||||||||||||  | || |||| || |||||||||| |  ||||||||||  || ||||||||||| | | ||||||| | ||||||| |  || ||||    
T  10925698 gagaagagagagaccgagggtgtgaggtatggaaggagaagagagagaacttagagaagtgagtgtcgtttgaaagactaaaactttgattgtgttagtg 10925599  T
Q  117 aaatgatttaggattttggtttctatttgtataaaaggtatgataaatt 165  Q
    |||||||||||| |||  | |||||||| ||||||||| || |||||||    
T  10925598 aaatgatttagggtttcagattctatttatataaaaggaataataaatt 10925550  T

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Target: chr6; HSP #17
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 174 - 261
Target Start/End: Original strand, 32853835 - 32853923
Alignment:
Q  174 catttgggacgggtttggatatgaatttggg-tgggtacctatattcccgttatccatcctatacctgtgttttgaaatcgaggaaaac 261  Q
    |||||||||||||||||| ||||  || ||| ||||||||||||| ||||||| || ||| ||||| ||||||||| |||| |||||||    
T  32853835 catttgggacgggtttgggtatgggttcggggtgggtacctatatacccgttacccgtcccatacccgtgttttgagatcggggaaaac 32853923  T

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Target: chr6; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 64 - 149
Target Start/End: Original strand, 29341131 - 29341216
Alignment:
Q  64 aactatgataagtgagtgtcatctaaaagactgagactttgactacgtgagtgaaatgatttaggattttggtttctatttgtata 149  Q
    ||||||||||||||| |||||||| ||||| ||||| | |||||   | ||||||||||| |||| ||| ||||||||||| ||||    
T  29341131 aactatgataagtgattgtcatctgaaagattgagaatctgactgtataagtgaaatgatatagggtttgggtttctatttatata 29341216  T

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Target: chr6; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 202 - 271
Target Start/End: Original strand, 32532560 - 32532629
Alignment:
Q  202 gggtgggtacctatattcccgttatccatcctatacctgtgttttgaaatcgaggaaaactcaaactcat 271  Q
    |||||||||||||||| ||| ||| || ||| ||||| |||||||||||||| ||||||| || ||||||    
T  32532560 gggtgggtacctatatacccattacccgtcccatacccgtgttttgaaatcggggaaaacccatactcat 32532629  T

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Target: chr6; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 174 - 261
Target Start/End: Original strand, 2367317 - 2367405
Alignment:
Q  174 catttgggacgggtttggatatgaatt-tgggtgggtacctatattcccgttatccatcctatacctgtgttttgaaatcgaggaaaac 261  Q
    |||||||||||||||||| ||||  ||  |||||||||| ||||| ||||||| || ||| ||||| ||||||||| |||| |||||||    
T  2367317 catttgggacgggtttgggtatgggttcggggtgggtacttatatacccgttacccgtcccatacccgtgttttgagatcggggaaaac 2367405  T

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Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 74 - 144
Target Start/End: Complemental strand, 21877206 - 21877136
Alignment:
Q  74 agtgagtgtcatctaaaagactgagactttgactacgtgagtgaaatgatttaggattttggtttctattt 144  Q
    |||||||||| ||| | | |||||||||||||||   ||||||||||| |||||||||| ||||| |||||    
T  21877206 agtgagtgtcgtctgacacactgagactttgactgtatgagtgaaatggtttaggatttaggtttatattt 21877136  T

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Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 267
Target Start/End: Original strand, 14034522 - 14034587
Alignment:
Q  202 gggtgggtacctatattcccgttatccatcctatacctgtgttttgaaatcgaggaaaactcaaac 267  Q
    |||||||||||||||| ||||||| || ||  |||| ||||| || |||||| |||||||||||||    
T  14034522 gggtgggtacctatatacccgttacccgtctcatacttgtgtcttaaaatcggggaaaactcaaac 14034587  T

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Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 267
Target Start/End: Original strand, 14506106 - 14506171
Alignment:
Q  202 gggtgggtacctatattcccgttatccatcctatacctgtgttttgaaatcgaggaaaactcaaac 267  Q
    ||||||||||||| || |  |||| || ||| |||||||||||||||||||| ||||||| |||||    
T  14506106 gggtgggtacctaaatacttgttacccgtcccatacctgtgttttgaaatcggggaaaacccaaac 14506171  T

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Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 267
Target Start/End: Complemental strand, 28079764 - 28079699
Alignment:
Q  202 gggtgggtacctatattcccgttatccatcctatacctgtgttttgaaatcgaggaaaactcaaac 267  Q
    |||||||||||||||| ||||||| || |||  ||||  ||||||||||||| ||||||| |||||    
T  28079764 gggtgggtacctatatccccgttacccgtcccgtacccatgttttgaaatcggggaaaacccaaac 28079699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 114 - 154
Target Start/End: Complemental strand, 372939 - 372899
Alignment:
Q  114 gtgaaatgatttaggattttggtttctatttgtataaaagg 154  Q
    ||||||||||||||||||| | ||||||||| |||||||||    
T  372939 gtgaaatgatttaggatttagatttctatttatataaaagg 372899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 174 - 261
Target Start/End: Complemental strand, 10142615 - 10142527
Alignment:
Q  174 catttgggacgggtttggatatgaatttggg-tgggtacctatattcccgttatccatcctatacctgtgttttgaaatcgaggaaaac 261  Q
    |||||||||| ||||||| ||||| || ||| ||||||||||||| ||||||| |  ||| ||||| || |||||| |||| |||||||    
T  10142615 catttgggacaggtttgggtatgagttcggggtgggtacctatatacccgttacctgtcccatacccgttttttgagatcggggaaaac 10142527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 174 - 261
Target Start/End: Original strand, 27738763 - 27738851
Alignment:
Q  174 catttgggacgggtttggatatgaatttggg-tgggtacctatattcccgttatccatcctatacctgtgttttgaaatcgaggaaaac 261  Q
    |||||||||||||||||| ||||  || ||| ||||||| |||||  | |||| || ||| ||||| |||||||||||||| |||||||    
T  27738763 catttgggacgggtttgggtatgggttcggggtgggtacatatatatctgttacccgtcccatacccgtgttttgaaatcggggaaaac 27738851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 174 - 261
Target Start/End: Original strand, 32053079 - 32053167
Alignment:
Q  174 catttgggacgggtttggatatgaatttggg-tgggtacctatattcccgttatccatcctatacctgtgttttgaaatcgaggaaaac 261  Q
    ||||| |||||||||||| ||||  |||||| ||||||| ||||| ||||||| || ||| ||| |  ||||||||||||| |||||||    
T  32053079 cattttggacgggtttgggtatgggtttggggtgggtacatatatacccgttacccgtcccatatccatgttttgaaatcggggaaaac 32053167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1322 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: scaffold1322
Description:

Target: scaffold1322; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 17 - 173
Target Start/End: Original strand, 945 - 1100
Alignment:
Q  17 gagaagagagaggtcaagagtgtcagatatggaaggatataagagagaactatgataagtgagtgtcatctaaaagactgagactttgactacgtgagtg 116  Q
    |||||||||||||   ||||||| ||||||| ||||| | || |||||| |||||||||||| |||||||| ||||| |||||||||||| |||||||||    
T  945 gagaagagagaggaggagagtgtgagatatgaaaggagaaaa-agagaattatgataagtgattgtcatcttaaagaatgagactttgaccacgtgagtg 1043  T
Q  117 aaatgatttaggattttggtttctatttgtataaaaggtatgataaattgattttct 173  Q
    |||||||||| |||||  |||||||||| ||||||| |  | ||||||| |||||||    
T  1044 aaatgatttaagatttgagtttctatttatataaaatgggtaataaattaattttct 1100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0184 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0184
Description:

Target: scaffold0184; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 202 - 271
Target Start/End: Original strand, 2989 - 3058
Alignment:
Q  202 gggtgggtacctatattcccgttatccatcctatacctgtgttttgaaatcgaggaaaactcaaactcat 271  Q
    |||||||||| ||||| || ||||||| |||| |||| || ||||||||||| ||||||| |||||||||    
T  2989 gggtgggtacatatatcccagttatccgtcctgtacccgtattttgaaatcggggaaaacccaaactcat 3058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 202 - 267
Target Start/End: Original strand, 33413 - 33478
Alignment:
Q  202 gggtgggtacctatattcccgttatccatcctatacctgtgttttgaaatcgaggaaaactcaaac 267  Q
    |||||||||| ||||| ||||||| || ||| ||||| |||||||||||||| ||||||| |||||    
T  33413 gggtgggtacatatatacccgttacccgtcccatacccgtgttttgaaatcggggaaaacccaaac 33478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0294 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 203 - 271
Target Start/End: Original strand, 14796 - 14864
Alignment:
Q  203 ggtgggtacctatattcccgttatccatcctatacctgtgttttgaaatcgaggaaaactcaaactcat 271  Q
    ||||||||||||||| ||| |||||| ||| || | |||||||||||||||  |||||| |||||||||    
T  14796 ggtgggtacctatatacccattatccgtcccatgcatgtgttttgaaatcggagaaaacccaaactcat 14864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0135 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0135
Description:

Target: scaffold0135; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 174 - 244
Target Start/End: Original strand, 36145 - 36216
Alignment:
Q  174 catttgggacgggtttggatatgaatttggg-tgggtacctatattcccgttatccatcctatacctgtgtt 244  Q
    |||| ||||||||||||| ||||| |||||| ||| ||||||||| | |||||||| ||||||||| |||||    
T  36145 cattcgggacgggtttggttatgagtttgggatggatacctatatactcgttatccgtcctatacccgtgtt 36216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 267
Target Start/End: Complemental strand, 107427 - 107394
Alignment:
Q  234 atacctgtgttttgaaatcgaggaaaactcaaac 267  Q
    |||||||||||||||||||||| |||||||||||    
T  107427 atacctgtgttttgaaatcgagaaaaactcaaac 107394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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