View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9936_low_26 (Length: 295)
Name: NF9936_low_26
Description: NF9936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9936_low_26 |
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Alignment Details
Target: chr3 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 3 - 285
Target Start/End: Original strand, 39681953 - 39682235
Alignment:
| Q |
3 |
atcataagaaaacattaaattagaaatgatttgattcgtatatgcaaacggtgcaaacctttttacactaaggtgtaaaaagtgatatgtttaaaaacgt |
102 |
Q |
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| T |
39681953 |
atcataagaaaacgttaaattagaaatgatttgattcgtatatgcaaacggtgcaaacctttttacactaaggtgtaaaaagtgatatgtttaaaaacgt |
39682052 |
T |
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| Q |
103 |
acacctaatcatgtgtaaaacatacacctgatcattaaaatgtttgacttcaatcatagacagtctaaaaactttttacgctaaggtgtatacaaagtga |
202 |
Q |
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| T |
39682053 |
acacctaatcaggtgtaaaacatacacctgatcattaaaatgtttgacttcaatcgtagacagtgtaaaaactttttacgctaaggtgtatagaaagtga |
39682152 |
T |
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| Q |
203 |
tgtgtatgtatgtaccttggatgtaaaatgtggcgttggtttcgaatccagcacggcaagtatcacaataaacgcaacctttg |
285 |
Q |
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| T |
39682153 |
tgtgtatatatgtaccttggatgtaaaatgtggcgttggtttcgaatccagcacggcaagtatcacaataaacgcaacctttg |
39682235 |
T |
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Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 132 - 160
Target Start/End: Complemental strand, 27032076 - 27032048
Alignment:
| Q |
132 |
gatcattaaaatgtttgacttcaatcata |
160 |
Q |
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| T |
27032076 |
gatcattaaaatgtttgacttcaatcata |
27032048 |
T |
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