View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9936_low_28 (Length: 273)
Name: NF9936_low_28
Description: NF9936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9936_low_28 |
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Alignment Details
Target: chr7 (Bit Score: 144; Significance: 9e-76; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 51 - 242
Target Start/End: Complemental strand, 20073110 - 20072921
Alignment:
| Q |
51 |
aagaagcctttggacatcgaagccgtatttattgtaaacctatgnnnnnnnnnatgaaaataaattataatcttaatgacaaaaacaataaacatgatac |
150 |
Q |
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| T |
20073110 |
aagaagcctttggacatcaaagccgtatttagtgtaaacctatgttttttt--aggaaaagaaattataatcttaatgacaaaaacaataaacatgatac |
20073013 |
T |
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| Q |
151 |
acacattggtggtaactttcgtattcattctaaagtttgcaatttgcagagttcataaatgagtttctaaaattattatgctgtaaagtttg |
242 |
Q |
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| T |
20073012 |
acacattggtggtaactttcgtattcattctaaagtttgcaatttgcagagttcataaatgagtttctaaaattattatgctgtaaagtttg |
20072921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 131 - 208
Target Start/End: Complemental strand, 20083753 - 20083675
Alignment:
| Q |
131 |
aaaaacaataaacatgatacacacattggtggtaactttcgtattcattctaaag-tttgcaatttgcagagttcataa |
208 |
Q |
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||||||||||||||||||||||||||| |||| |||||| ||||||||||||||| |||||||| || ||||||||||| |
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| T |
20083753 |
aaaaacaataaacatgatacacacattcgtggcaacttttgtattcattctaaagttttgcaatctgtagagttcataa |
20083675 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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