View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9936_low_3 (Length: 811)
Name: NF9936_low_3
Description: NF9936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9936_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 438; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 184 - 669
Target Start/End: Complemental strand, 30649580 - 30649095
Alignment:
| Q |
184 |
acaataattaatagaatacacatgcattcaataaaatacataatatgatttaatatttaacacattgatccactatttgctaaggttgaatagaaacaaa |
283 |
Q |
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|||||| ||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| |
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| T |
30649580 |
acaatagttaatagaatacacaggcattcaataaaatacatgatatgatttaatatttaacacattgattcactatttgctaaggttgaacagaaacaaa |
30649481 |
T |
|
| Q |
284 |
gataacaatgacaagtaaaattacaaatcaacgttgagatcgatattattggttgtgaattcggccataagtggtttgagtcacagagatcttagcagtc |
383 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
30649480 |
gataacaatgacaagtaaaattacaaatcaacgttgagatcgatattattggttgtgaattcggtcataagtggtttgagtcacagagatcttagcagtc |
30649381 |
T |
|
| Q |
384 |
atcatctatatgaccaatgtccataacctttgttgatgtttctcctattgaaacaatgctttgactatcttattaaatctcttagcaattctgtgtttaa |
483 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| |
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| T |
30649380 |
atcatctatatgaccaatgtccataacctttgttgatgtttctcctattgaaacaatgctttgactatcatattaaatatcttagcaattctgtgtttaa |
30649281 |
T |
|
| Q |
484 |
gccgtgaccgtgtgcacactccaacaatgacgtcaatcaccatgggtaacagaattgaaccaaaaaggactaataaaatcacggaattgacatatgtagg |
583 |
Q |
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| T |
30649280 |
gccgtgaccgtctgtacactccaacaatgacgtcaatcaccatgggtaacagaattgaaccaaaaaggacgaataaaatcacggaattgacatgtgtagg |
30649181 |
T |
|
| Q |
584 |
ggatatcctccacatagaaaataaataactagcggtaaaccaacccattggagaacccactagaaagcatatttttccatatggta |
669 |
Q |
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| T |
30649180 |
ggatatcctccacatagaaaataaataactagcggtaaaccaacccattggagaacccactagaaagcatatttttccatatggta |
30649095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 146; E-Value: 2e-76
Query Start/End: Original strand, 187 - 669
Target Start/End: Complemental strand, 26089913 - 26089440
Alignment:
| Q |
187 |
ataattaatagaatacacatgcattcaataaaatacataatatgatttaa-tatttaacacattgatccactatttgctaaggttgaatagaaacaaaga |
285 |
Q |
| |
|
||||||| || |||||||| ||||||||||||||||| |||| |||||| ||||||| ||||||| ||| |||||||||| || | |||||||||| |
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| T |
26089913 |
ataattattataatacacaagcattcaataaaatacaagatataatttaaatatttaatacattgaatcacaatttgctaagatttacg-gaaacaaaga |
26089815 |
T |
|
| Q |
286 |
taacaatgacaagtaaaattacaaatcaacgttgagatcgatattattggttgtgaattcggccataagtggtttgagtcacagagatcttag-ca--gt |
382 |
Q |
| |
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|||||||||||| ||||||||||||||||||| || |||||||||||||||||||||||||||| ||| |||| ||| ||| | ||| || || |
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| T |
26089814 |
taacaatgacaatgaaaattacaaatcaacgttaaggtcgatattattggttgtgaattcggccagcagttgtttcagttgcagtctccgtagtcatcgt |
26089715 |
T |
|
| Q |
383 |
--catcatctatatgaccaatgtccataacctttgttgatgtttctcctattgaaacaatgctttgactatcttattaaatctcttagcaattctgtgtt |
480 |
Q |
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| T |
26089714 |
accatcatctatatgaccac-------aagctttattgatgtttctcctatttcaacaaagctta-actatcatattaaatatcttagcaattctgtgtt |
26089623 |
T |
|
| Q |
481 |
taagccgtgaccgtgtgcacactccaacaatgacgtcaatcaccatgggtaacagaattgaaccaaaaaggactaataaaatcacggaattgacatatgt |
580 |
Q |
| |
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|||||| | || |||||||||||||||||||||||||||||| ||||| || ||||| |||||||| |||||||| | ||||||||||| ||| |
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| T |
26089622 |
taagcctta------tgtacactccaacaatgacgtcaatcaccatggctaacataaatgaactaaaaaggatgaataaaataatggaattgacatgtgt |
26089529 |
T |
|
| Q |
581 |
aggggatatcctccacatagaaaataaataactagcggtaaaccaacccattggagaacccactagaaagcatatttttccatatggta |
669 |
Q |
| |
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|||||||||||||||||||||||||||||| ||| |||||| ||| | ||||||||| | |||||||| | ||||||||||||||||| |
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| T |
26089528 |
aggggatatcctccacatagaaaataaatagctaacggtaagccatctcattggagaggctactagaaaccctatttttccatatggta |
26089440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 17 - 102
Target Start/End: Complemental strand, 30649721 - 30649636
Alignment:
| Q |
17 |
agttatcatactcataacaataaaatgagcagagtatgataatacgataatttaaacgcacaatatcaacaatgcaataaacaaca |
102 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
30649721 |
agttatcatactcataacaataaaatgagcagagtatgataatacgataatttaaacgcacaatctcaacaatgcaataaacaaca |
30649636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 734 - 797
Target Start/End: Complemental strand, 30649030 - 30648970
Alignment:
| Q |
734 |
gaattcataccctgacaaaactgatttcccagcatttcctgggtgggcagaaatggtaaaattg |
797 |
Q |
| |
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||||||||| |||||||| |||||||||||||||||||||| |||||||||||||||||||| |
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| T |
30649030 |
gaattcataacctgacaagactgatttcccagcatttcctg---gggcagaaatggtaaaattg |
30648970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 734 - 775
Target Start/End: Complemental strand, 26089375 - 26089334
Alignment:
| Q |
734 |
gaattcataccctgacaaaactgatttcccagcatttcctgg |
775 |
Q |
| |
|
||||||||| ||||||||||| |||||||||||||||||||| |
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|
| T |
26089375 |
gaattcatatcctgacaaaacagatttcccagcatttcctgg |
26089334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 3e-16; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 277 - 385
Target Start/End: Complemental strand, 6627038 - 6626931
Alignment:
| Q |
277 |
aaacaaagataacaatgacaagtaaaattacaaatcaacgttgagatcgatattattggttgtgaattcggccataagtggtttgagtcacagagatctt |
376 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||| | |||||||| ||| | || ||||||||||||| || |||||||||||| ||||||||| |
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| T |
6627038 |
aaacaaagataacaatgacaaggaaaattacaaatcgatattgagatcaatactttttgttgtgaattcgg-cagcagtggtttgagttgcagagatctc |
6626940 |
T |
|
| Q |
377 |
agcagtcat |
385 |
Q |
| |
|
|| |||||| |
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|
| T |
6626939 |
agtagtcat |
6626931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 602 - 651
Target Start/End: Original strand, 6610681 - 6610730
Alignment:
| Q |
602 |
aaataaataactagcggtaaaccaacccattggagaacccactagaaagc |
651 |
Q |
| |
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|||||||| ||||||| | |||||||||| ||||||| |||||||||||| |
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|
| T |
6610681 |
aaataaatgactagcgctgaaccaacccactggagaagccactagaaagc |
6610730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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