View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9936_low_36 (Length: 207)
Name: NF9936_low_36
Description: NF9936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9936_low_36 |
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| [»] chr8 (4 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 164; Significance: 8e-88; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 1 - 207
Target Start/End: Original strand, 14637252 - 14637459
Alignment:
| Q |
1 |
ttgagaaatctttttgaacttctgactttacttcccatatttcaaaatctagaatttcattcctagaattcggtatcattacagtaaacataaacataaa |
100 |
Q |
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| T |
14637252 |
ttgagaaatccttttgaacttctgactttacttcccatatttcaaaatctagaatttcattcctagaattcgatattatcacaataaacataaacataaa |
14637351 |
T |
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| Q |
101 |
atctaatatacatttttgagcaatcattttgaactagttagcgacccttaaagc-tagtgtaggatcagtgaggaacttaaactctttctcagctgatag |
199 |
Q |
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| T |
14637352 |
atctaatatacatttttgagcaatcattttgaactatttagcgacccttaaatctttgtgtaggatcagtgaggaacttaaacactttctcagctgatag |
14637451 |
T |
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| Q |
200 |
aggaacct |
207 |
Q |
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|||||||| |
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| T |
14637452 |
aggaacct |
14637459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 12 - 200
Target Start/End: Original strand, 12889370 - 12889555
Alignment:
| Q |
12 |
ttttgaacttctgactttacttcccatatttcaaaatctagaatttcattcctagaattcggtatcattacagtaaacataaacataaaatctaatatac |
111 |
Q |
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| T |
12889370 |
ttttgaacttctgacttaacatcc-atttatcaaaatctagaatgtcattc--agaattcgatatgtttac-gtacatataaacacaaaatctaaaatac |
12889465 |
T |
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| Q |
112 |
atttttgagcaatcattttgaactagttagcgacccttaaagc-tagtgtaggatcagtgaggaacttaaactctttctcagctgataga |
200 |
Q |
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| T |
12889466 |
attattgagcaatcattttgaactagccagtgaaccttaaatcttcgtgtagaatcaatgaggaacttaaacactttctcagctgataga |
12889555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 14 - 133
Target Start/End: Original strand, 12079088 - 12079207
Alignment:
| Q |
14 |
ttgaacttctgactttacttcccatatttcaaaatctagaatttcattcctagaattcggtatcattacagtaaacataaacataaaatctaatatacat |
113 |
Q |
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||||||||||||||| || |||| || | |||||||| ||| |||||||||||||||| ||| | ||| || ||||||||| ||||||||| ||| || |
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| T |
12079088 |
ttgaacttctgacttaacatcccgaatatgaaaatctaaaatgtcattcctagaattcgatattttcacactacacataaacacaaaatctaaaataaat |
12079187 |
T |
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| Q |
114 |
ttttgagcaatcattttgaa |
133 |
Q |
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| T |
12079188 |
ttttgagcaattattttgaa |
12079207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 159 - 204
Target Start/End: Original strand, 14640877 - 14640922
Alignment:
| Q |
159 |
gtaggatcagtgaggaacttaaactctttctcagctgatagaggaa |
204 |
Q |
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| T |
14640877 |
gtaggattagtgaggaacttaaacactttctcagctgatagaggaa |
14640922 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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