View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9936_low_4 (Length: 756)
Name: NF9936_low_4
Description: NF9936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9936_low_4 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 713; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 713; E-Value: 0
Query Start/End: Original strand, 10 - 738
Target Start/End: Complemental strand, 36942279 - 36941551
Alignment:
| Q |
10 |
aagaagagaacatgaagatggtgaatttgaagagtacatgggtgaagatttcggaagagggacaggacccaagaagtatacatatgcagaattagcaaat |
109 |
Q |
| |
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|||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36942279 |
aagaagagaacaggaagatggtgaatttcaagagtacatgggtgaagatttcggaagagggacaggacccaagaagtatacatatgcagaattagcaaat |
36942180 |
T |
|
| Q |
110 |
gcagctaataatttcaaagatgagcataagctaggacaaggaggatttggaggtgtttatagaggttttctaaaagacacaaaatcttatgttgctatta |
209 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
36942179 |
gcagctaataatttcaaagatgagcataagctaggacaaggaggatttggaggtgtttatagaggctttctaaaagacacaaaatcttatgttgctatta |
36942080 |
T |
|
| Q |
210 |
agagtgtgtcagaagattctcatcaagggataaaggaatttgcatcagaagtaacgataattagcaaattaaggcatagaaatctagtgcaattgattgg |
309 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36942079 |
agagtgtgtcagaagattctcatcaagggataaaggaatttgcatcagaagtaacgataattagcaaattaaggcatagaaatctagtgcaattgattgg |
36941980 |
T |
|
| Q |
310 |
ttggtgtcatcaaaggaaaaaactcttgcttgtgtatgagtacatgccaaatggtagtttagacattcatcttttcaagaaacaaagtttgttgaaatgg |
409 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36941979 |
ttggtgtcatcaaaggaaaaaactcttgcttgtgtatgagtacatgccaaatggtagtttagacattcatcttttcaagaaacaaagtttgttgaaatgg |
36941880 |
T |
|
| Q |
410 |
ggtgttagatatacaatagctaaaggcttggcatctgcattgttgtacttgcatgaagaatgggaacaatgtgttgtacatagagacataaaagcaagta |
509 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36941879 |
ggtgttagatatacaatagctaaaggcttggcatctgcattgttgtacttgcatgaagaatgggaacaatgtgttgtacatagagacataaaagcaagta |
36941780 |
T |
|
| Q |
510 |
acatcatgttggattcagagtttaacgcaaaacttggagatttcggtttagcaaggtttgtggatcatgcaaaaggtggacaaaccacagctttagcagg |
609 |
Q |
| |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36941779 |
acatcatgttggattcagaatttaacgcaaaacttggagatttcggtttagcaaggtttgtggatcatgcaaaaggtggacaaaccacagctttagcagg |
36941680 |
T |
|
| Q |
610 |
gactatgggatacatggctcctgaatgtgctaccacaggaagggccagtaaagaaaccgatgtgtatagttttggaattgttgctttagagatagcttgt |
709 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36941679 |
gactatgggatacatggctcctgaatgtgctaccacaggaagggccagtaaagaaaccgatgtgtatagttttggaattgttgctttagagatagcttgt |
36941580 |
T |
|
| Q |
710 |
ggaagaaaaccaataattaatgctcaaga |
738 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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| T |
36941579 |
ggaagaaaaccaataattaatgctcaaga |
36941551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 516; E-Value: 0
Query Start/End: Original strand, 23 - 726
Target Start/End: Original strand, 36938852 - 36939555
Alignment:
| Q |
23 |
gaagatggtgaatttgaagagtacatgggtgaagatttcggaagagggacaggacccaagaagtatacatatgcagaattagcaaatgcagctaataatt |
122 |
Q |
| |
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||||||||||||||||||||||||||||| || ||||| ||||| ||| ||||||| | ||||||||||||||||||||||||| | ||||||||| ||| |
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| T |
36938852 |
gaagatggtgaatttgaagagtacatgggagaggattttggaaggggggcaggacctaggaagtatacatatgcagaattagcacacgcagctaatgatt |
36938951 |
T |
|
| Q |
123 |
tcaaagatgagcataagctaggacaaggaggatttggaggtgtttatagaggttttctaaaagacacaaaatcttatgttgctattaagagtgtgtcaga |
222 |
Q |
| |
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||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| |||||||| |
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| T |
36938952 |
tcaaagacgagtataagctaggacaaggaggatttggaggtgtttatagaggttttcttaaagacacaaaatcttatgttgctgttaagagggtgtcaga |
36939051 |
T |
|
| Q |
223 |
agattctcatcaagggataaaggaatttgcatcagaagtaacgataattagcaaattaaggcatagaaatctagtgcaattgattggttggtgtcatcaa |
322 |
Q |
| |
|
|||||| |||||||| |||||||| || |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
36939052 |
agattcacatcaaggaataaaggagttcgcatcagaagtaacaattattagcaaattaaggcatagaaatctagtgcaattgattggttggtgtcatgaa |
36939151 |
T |
|
| Q |
323 |
aggaaaaaactcttgcttgtgtatgagtacatgccaaatggtagtttagacattcatcttttcaagaaacaaagtttgttgaaatggggtgttagatata |
422 |
Q |
| |
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|| ||||| || || ||||| |||||||||||||||||||||||||||||||||||||||||||| || |||||||| |||||||||||||||||||||| |
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| T |
36939152 |
agaaaaaagcttttacttgtatatgagtacatgccaaatggtagtttagacattcatcttttcaaaaatcaaagtttcttgaaatggggtgttagatata |
36939251 |
T |
|
| Q |
423 |
caatagctaaaggcttggcatctgcattgttgtacttgcatgaagaatgggaacaatgtgttgtacatagagacataaaagcaagtaacatcatgttgga |
522 |
Q |
| |
|
||||||||| ||||||||| |||||| |||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36939252 |
caatagctagaggcttggcttctgcactgttatatttgcatgaagaatgggaacaatgtgttgtacatagagacataaaagcaagtaacatcatgttgga |
36939351 |
T |
|
| Q |
523 |
ttcagagtttaacgcaaaacttggagatttcggtttagcaaggtttgtggatcatgcaaaaggtggacaaaccacagctttagcagggactatgggatac |
622 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| |||||||||||||||||| |||||||| |
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| T |
36939352 |
ttcagagtttaatgcaaaacttggagatttcggtttagcaaggtttgtggaccatgcaaaaggtgcacaaactacagctttagcagggactttgggatac |
36939451 |
T |
|
| Q |
623 |
atggctcctgaatgtgctaccacaggaagggccagtaaagaaaccgatgtgtatagttttggaattgttgctttagagatagcttgtggaagaaaaccaa |
722 |
Q |
| |
|
||||||||||||||||||||||||||||| || ||||||||||| || |||||||||||||| ||||||||||||||||||||||| ||||||||||| | |
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| T |
36939452 |
atggctcctgaatgtgctaccacaggaagagctagtaaagaaacagacgtgtatagttttggtattgttgctttagagatagcttgcggaagaaaaccta |
36939551 |
T |
|
| Q |
723 |
taat |
726 |
Q |
| |
|
|||| |
|
|
| T |
36939552 |
taat |
36939555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 425 - 555
Target Start/End: Original strand, 36949483 - 36949613
Alignment:
| Q |
425 |
atagctaaaggcttggcatctgcattgttgtacttgcatgaagaatgggaacaatgtgttgtacatagagacataaaagcaagtaacatcatgttggatt |
524 |
Q |
| |
|
||||||| ||| ||||| || ||||| |||||| |||||||||| || || || ||||| ||||||||||||||||| |||| || | |||||||||| |
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|
| T |
36949483 |
atagctagaggtttggcctcggcattattgtacctgcatgaagagtgtgagcattgtgtgctacatagagacataaaatcaagcaatgttatgttggatt |
36949582 |
T |
|
| Q |
525 |
cagagtttaacgcaaaacttggagatttcgg |
555 |
Q |
| |
|
| | || || |||| |||||||||||||| |
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|
| T |
36949583 |
ctaatttcaatacaaagcttggagatttcgg |
36949613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 425 - 555
Target Start/End: Original strand, 36959617 - 36959747
Alignment:
| Q |
425 |
atagctaaaggcttggcatctgcattgttgtacttgcatgaagaatgggaacaatgtgttgtacatagagacataaaagcaagtaacatcatgttggatt |
524 |
Q |
| |
|
||||||| ||| ||||| || ||||| |||||| |||||||||| || || || ||||| ||||||||||||||||| |||| || | |||||||||| |
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|
| T |
36959617 |
atagctagaggtttggcctcggcattattgtacctgcatgaagagtgtgagcattgtgtgctacatagagacataaaatcaagcaatgttatgttggatt |
36959716 |
T |
|
| Q |
525 |
cagagtttaacgcaaaacttggagatttcgg |
555 |
Q |
| |
|
| | || || |||| |||||||||||||| |
|
|
| T |
36959717 |
ctaatttcaatacaaagcttggagatttcgg |
36959747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 437 - 522
Target Start/End: Original strand, 36934450 - 36934535
Alignment:
| Q |
437 |
ttggcatctgcattgttgtacttgcatgaagaatgggaacaatgtgttgtacatagagacataaaagcaagtaacatcatgttgga |
522 |
Q |
| |
|
||||| || |||||| | || ||||| |||||||||||| ||||||| | ||||| ||||||||| |||| ||||| |||||||| |
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|
| T |
36934450 |
ttggcctcggcattgctttatttgcaggaagaatgggaaaaatgtgtgattcatagggacataaaatcaagcaacataatgttgga |
36934535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000005; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 437 - 522
Target Start/End: Original strand, 47871573 - 47871658
Alignment:
| Q |
437 |
ttggcatctgcattgttgtacttgcatgaagaatgggaacaatgtgttgtacatagagacataaaagcaagtaacatcatgttgga |
522 |
Q |
| |
|
||||| || ||||||||||| | ||||||||||||||||||||||| | ||||||||||||||| | || ||||| |||||||| |
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|
| T |
47871573 |
ttggcttcggcattgttgtatcttcatgaagaatgggaacaatgtgtgattcatagagacataaaatccagcaacattatgttgga |
47871658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 318
Target Start/End: Original strand, 47871277 - 47871454
Alignment:
| Q |
141 |
taggacaaggaggatttggaggtgtttatagaggttttctaaaagacacaaaatcttatgttgctattaagagtgtgtcagaagattctcatcaagggat |
240 |
Q |
| |
|
|||||||||| || ||||| |||||||||| ||| | | | ||||||| | | || |||||||||| ||||| | ||| ||| ||| | |||||||| |
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| T |
47871277 |
taggacaaggtggttttggtggtgtttataaaggctatttgaaagacatagattccaatgttgctataaagagaatatcaagagagtctaaacaagggat |
47871376 |
T |
|
| Q |
241 |
aaaggaatttgcatcagaagtaacgataattagcaaattaaggcatagaaatctagtgcaattgattggttggtgtca |
318 |
Q |
| |
|
|||||||| |||| | ||||| | ||| |||||| || | ||||| || ||| |||| ||| | |||||||||||||| |
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|
| T |
47871377 |
aaaggaatatgcaactgaagtgaagatcattagccaacttaggcacaggaatttagtacaactaattggttggtgtca |
47871454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 646 - 705
Target Start/End: Complemental strand, 3054491 - 3054432
Alignment:
| Q |
646 |
aggaagggccagtaaagaaaccgatgtgtatagttttggaattgttgctttagagatagc |
705 |
Q |
| |
|
||||||||| ||||||||| | || ||||||||||||||||||||||||| ||| |||| |
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|
| T |
3054491 |
aggaagggctagtaaagaatctgacatgtatagttttggaattgttgctttggagctagc |
3054432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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