View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9936_low_8 (Length: 505)
Name: NF9936_low_8
Description: NF9936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9936_low_8 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 36 - 486
Target Start/End: Original strand, 31793265 - 31793715
Alignment:
| Q |
36 |
aaataaaattaaagagttggattttagctaagataaagtaatgtgtacataatattaaactaatggtaacgtacgaaaaaagttggatagatggggatga |
135 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31793265 |
aaataaaattaaagagttggattttagctaagataaagtaatgtgtacataatattaaactaatggtaacgtacgaaaaaagttggatagatggggatga |
31793364 |
T |
|
| Q |
136 |
gatcgatatggtggatgttaaatgtagaaaatgaagtaggaccatgatggttatattgaagcnnnnnnnncgtgcaatatgtgggggtttcctcttgttg |
235 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
31793365 |
ggtcgatatggtggatgttaaatgtagaaaatgaagtaggaccatgatggt-atattgaagcaaaaaaaacgtgcaatatgtgggggtttcctcttgttg |
31793463 |
T |
|
| Q |
236 |
aaaggtatgaaatgaatttatgcaagttaattaattccaaagaagacaatttagataaatgacaagggacacttggtgatgtttattatttacaagtatg |
335 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31793464 |
aaaggtatgaaatgaatttatgcaagttaattaattccaaagaagacaatttagataaatgacaagggacacttggtgatgtttattatttacaagtatg |
31793563 |
T |
|
| Q |
336 |
tagctgagtgggatcttaactcggacaagtgggtacgttgtannnnnnnngtcgactcaagtgggtacgttgtgatgtatttcattgaattgacgtat-a |
434 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
31793564 |
tagctgagtgggatcttaactcggacaagtgggtacgttgtattttttttgtcgactcaagtgggtacgttgtgatgtatttcattgaattgacgtataa |
31793663 |
T |
|
| Q |
435 |
aagtataatacaaatgtttaaagannnnnnnaagtattcaattgcaatgtta |
486 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
31793664 |
aagtataatacaaatgtttaaagatttttttaagtattcaattgcaatgtta |
31793715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University