View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9937_high_11 (Length: 379)
Name: NF9937_high_11
Description: NF9937
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9937_high_11 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 3 - 379
Target Start/End: Complemental strand, 46098603 - 46098227
Alignment:
| Q |
3 |
atgagatggacatcaatggtcaattcctcaatcatattcccatggttgagtcccctaaggggattgaagacttgaatctcagaacacttgtttggtagga |
102 |
Q |
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| T |
46098603 |
atgagttggtcatcaatggtcaattcctcaatcatattcccatggttgagtcccctaaggggattgaagacttgaatctcagaacacttgtttggtagga |
46098504 |
T |
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| Q |
103 |
tcattgaacaaaggctatgatcatgtgagtgtttaggcataggatacttacgcgatatgacaattgaattgataacctcgtctgcaggatggaatacaga |
202 |
Q |
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| T |
46098503 |
tcattgaacaaaggctatgatcatgtgagtgtttaggcataggatacttacgcgatatgacaattgaattgataacctcgtctgcaggatggaatacaga |
46098404 |
T |
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| Q |
203 |
gaggacctcaaagcctcgaagatcagaagcttcaaccactggatagagaaaagcacgagccccgtgagcactccttaacataagaagtgctcctggggcc |
302 |
Q |
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| T |
46098403 |
gaggacctcaaagcctcgaagatcagaagcttcaaccactggatagagaaaagcacgagccccgtgagcactccttaacataagaagtgctcctggggcc |
46098304 |
T |
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| Q |
303 |
atgtgcttccccaagtgatcaatgattcgannnnnnncctccttgtccataccgaccagggcagctaagtaaacaat |
379 |
Q |
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| T |
46098303 |
atgtgcttccccaagtgatcaatgattcgatttttttcctccttgtccataccgaccagggcagctaagtaaacaat |
46098227 |
T |
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Target: chr1 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 140 - 328
Target Start/End: Complemental strand, 37485230 - 37485042
Alignment:
| Q |
140 |
cataggatacttacgcgatatgacaattgaattgataacctcgtctgcaggatggaatacagagaggacctcaaagcctcgaagatcagaagcttcaacc |
239 |
Q |
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| T |
37485230 |
cataggatacctgcgcgctatgacaactgaattgataacctcgtccgttggatgaaacaccgagagcacctcaaagcctcgaagatcattggtatcaaca |
37485131 |
T |
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| Q |
240 |
actggatagagaaaagcacgagccccgtgagcactccttaacataagaagtgctcctggggccatgtgcttccccaagtgatcaatgat |
328 |
Q |
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| T |
37485130 |
accggatacaaaaaagcacgcgcaccgtgagcactcctgagcatcaggagtgctcctggtgccatgtacttagccaaatgctcaatgat |
37485042 |
T |
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