View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9937_high_14 (Length: 285)

Name: NF9937_high_14
Description: NF9937
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9937_high_14
NF9937_high_14
[»] chr2 (1 HSPs)
chr2 (1-285)||(11932023-11932306)


Alignment Details
Target: chr2 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 285
Target Start/End: Original strand, 11932023 - 11932306
Alignment:
Q  1 caaatgaaacaaccaataaaaattgtcgacgttagaaacttaaaagggnnnnnnnnattgaatggaatcaatgataaccttagaaataaaaaccttctgt 100  Q
    ||||||||||||||||||||||||||||||||| |||||||||| ||         |||| |||||||||||||||||||||||||||||||||||||||    
T  11932023 caaatgaaacaaccaataaaaattgtcgacgtt-gaaacttaaagggttttcttttattggatggaatcaatgataaccttagaaataaaaaccttctgt 11932121  T
Q  101 ccaatattactattagatatagtggtgatggtagttagtactgagagaaggagcaaatcagttaattgagtgagttatcatgcataagaaataaaaccta 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11932122 ccaatattactattagatatagtggtgatggtagttagtactgagagaaggagcaaatcagttaattgagtgagttatcatgcataagaaataaaaccta 11932221  T
Q  201 atttgcatcggagattttgaagggggaaatattagtgagagtgaattgaagtggcgggtaggtaacataggtgacagacgattac 285  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11932222 atttgcatcggagattttgaagggggaaatattagtgagagtgaattgaagtggcgggtaggtaacataggtgacagacgattac 11932306  T

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