View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9937_high_5 (Length: 467)
Name: NF9937_high_5
Description: NF9937
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9937_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 434; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 7 - 456
Target Start/End: Complemental strand, 26352756 - 26352307
Alignment:
| Q |
7 |
cttttaactgctaatggatgtagcatcacatttgccgtgttgggaatgaaaactgacagatgattctgcagtctcactggtgtggcagatgctaacctgt |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26352756 |
cttttaactgctaatggatgtagcatcacatttgccgtgttgggaatgaaaactgacagatgattctgcagtctcactggtgtggcagatgctaacctgt |
26352657 |
T |
|
| Q |
107 |
ttcgtttttgtttccctttttcgtgaaaacgatttctctggtatcattaattctcattccaatttcaaacttctgttaaatcatgttttaatttgaggtt |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26352656 |
ttcgtttttgtttccctttttcgtgaaaacgatttctctggtatcattaattcttattccaatttcaaacttctgttaaatcatgttttaatttgaggtt |
26352557 |
T |
|
| Q |
207 |
caagtctagtttacatgagacgaaaaagctttattgttcatgtaggttaagccttattgatgctatgctactgctcaaatcattgctcctttaagtgttt |
306 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26352556 |
taagtctagtttacatcagacgaaaaagctttattgttcatgtaggttaagccttattgatgctatgctactgctcaaatcattgctcctttaagtgttt |
26352457 |
T |
|
| Q |
307 |
cttgccaagggtactagatctgtttgaagtgaattaatcttagcttgttgaatctttatagatatgttttagttcttactcttgtggctgtgtataattg |
406 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
26352456 |
cttgccaagggtactagatctgtttgaagtgaattaatcttagcttgttgaatctttatagatctgttttagttcttactcttgtggctgtgtataattg |
26352357 |
T |
|
| Q |
407 |
tttatcaattcctgttccttgctcatctttgtttacttagttaaatctct |
456 |
Q |
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| T |
26352356 |
tttatcaattcctgttccttgctcatctttgtttacttagttaaatctct |
26352307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 7 - 88
Target Start/End: Complemental strand, 20014087 - 20014006
Alignment:
| Q |
7 |
cttttaactgctaatggatgtagcatcacatttgccgtgttgggaatgaaaactgacagatgattctgcagtctcactggtg |
88 |
Q |
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||||| ||||||||||||||||| ||| ||||||| |||||| |||||||| ||| |||| |||||||||| ||||||||| |
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| T |
20014087 |
cttttcactgctaatggatgtagtatcgcatttgcagtgttgtgaatgaaagatgatagataattctgcagtatcactggtg |
20014006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 35 - 178
Target Start/End: Original strand, 26649288 - 26649426
Alignment:
| Q |
35 |
catttgccgtgttgggaatgaaaactgacagatgattctgcagtctcactggtgtggcagatgctaacctgtttcgtttttgtttccctttttcgtgaaa |
134 |
Q |
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||||||| ||||| |||||||| ||| | |||||||| | || ||||||||||||||| | |||| ||||| ||||||||||||| ||||| ||||| |
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| T |
26649288 |
catttgctttgttgagaatgaaaggtgatatatgattcttccgtatcactggtgtggcaggttctaatgtgtttagtttttgtttccc-ttttcatgaaa |
26649386 |
T |
|
| Q |
135 |
acgatttctctggtatcattaattctcattccaatttcaaactt |
178 |
Q |
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|| |||| || | ||| ||||||||||||||||||||||| |
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| T |
26649387 |
actattttgctagcatc----attctcattccaatttcaaactt |
26649426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 279 - 324
Target Start/End: Original strand, 19983899 - 19983944
Alignment:
| Q |
279 |
gctcaaatcattgctcctttaagtgtttcttgccaagggtactaga |
324 |
Q |
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||||||| |||||||||||| |||||||||||||| ||||| |||| |
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| T |
19983899 |
gctcaaagcattgctcctttgagtgtttcttgccatgggtattaga |
19983944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 290 - 324
Target Start/End: Original strand, 1723224 - 1723258
Alignment:
| Q |
290 |
tgctcctttaagtgtttcttgccaagggtactaga |
324 |
Q |
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|||||||||||||||| |||||||||||||||||| |
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| T |
1723224 |
tgctcctttaagtgttgcttgccaagggtactaga |
1723258 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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