View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9937_low_1 (Length: 707)

Name: NF9937_low_1
Description: NF9937
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9937_low_1
NF9937_low_1
[»] chr4 (9 HSPs)
chr4 (1-426)||(28111202-28111627)
chr4 (493-653)||(40393309-40393471)
chr4 (425-490)||(40383201-40383266)
chr4 (493-598)||(52412097-52412202)
chr4 (12-193)||(33131524-33131705)
chr4 (12-77)||(21867478-21867543)
chr4 (12-77)||(21923339-21923404)
chr4 (264-335)||(33131776-33131847)
chr4 (282-336)||(1611236-1611290)
[»] chr3 (2 HSPs)
chr3 (1-310)||(24836738-24837047)
chr3 (558-598)||(7773693-7773733)
[»] chr2 (1 HSPs)
chr2 (11-426)||(34325847-34326262)
[»] chr7 (1 HSPs)
chr7 (493-627)||(14676891-14677025)


Alignment Details
Target: chr4 (Bit Score: 406; Significance: 0; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 1 - 426
Target Start/End: Original strand, 28111202 - 28111627
Alignment:
Q  1 aaatcgctgtgtgccagattatccgataccccttctgaatcttcttattcctagacaactcatcccaccacttccaaagatgaaacaggtccggtggtgg 100  Q
    ||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28111202 aaatcgctgcgtgccggattatccgataccccttctgaatcttcttattcctagacaactcatcccaccacttccaaagatgaaacaggtccggtggtgg 28111301  T
Q  101 ataataattgaaaccgagccatgacggaagcttggtccaaactgctgttgccgtaacacaattgagaaaaagatgatccgacacctccgggaccccatga 200  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28111302 ataataattgaaaccgagccatgacagaagcttggtccaaactgctgttgccgtaacacaattgagaaaaagatgatccgacacctccgggaccccatga 28111401  T
Q  201 cacaacacacaggaaagagcagaatctggtggtaagacatgcctcctggaaagattgactctggtcgggatccttccacgtaaaagcttccaagaaaagg 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28111402 cacaacacacaggaaagagcagaatctggtggtaagacatgcctcctgaaaagattgactctggtcgggatccttccacgtaaaagcttccaagaaaagg 28111501  T
Q  301 caatcaccttggccggtgccgggcttttccaaatatgtgtgaacgccaacagctgcacctctgacagtgggtcagacaccaccatgtcatccaatttcct 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  28111502 caatcaccttggccggtgccgggcttttccaaatatgtgtgaacgccaacagctgcacctctgacagtgggtcagacaccactatgtcatccaatttcct 28111601  T
Q  401 atacatggaactcaccgaaaaggaac 426  Q
    ||||||||||||||||||||||||||    
T  28111602 atacatggaactcaccgaaaaggaac 28111627  T

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Target: chr4; HSP #2
Raw Score: 108; E-Value: 7e-54
Query Start/End: Original strand, 493 - 653
Target Start/End: Original strand, 40393309 - 40393471
Alignment:
Q  493 tattatcatcaaatcaattgtactatccagtattacattcaatcggaataacaaagttattttgatatacaatgcattcttatccttgactgcaaatttt 592  Q
    ||||||||||||||||||||| ||||||| | ||| || |||| |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||    
T  40393309 tattatcatcaaatcaattgtcctatccaatgttatatgcaatgggaataacaaagttcttttgatatacaatccattcttatccttgactgcaaatttt 40393408  T
Q  593 actgctttaattttatcaatagttatgagaaaatggctttg--atatattatctgcttatgca 653  Q
    ||| |||| |||||||||||||||||||||||||||| |||  ||||||||||||||||||||    
T  40393409 acttctttcattttatcaatagttatgagaaaatggcattgatatatattatctgcttatgca 40393471  T

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Target: chr4; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 425 - 490
Target Start/End: Original strand, 40383201 - 40383266
Alignment:
Q  425 actctctccatctaacattagggtgtcctattttagttttacaccattgaaatgcaataaataagg 490  Q
    ||||||||| |||||||||||||||||||||||||||||||||  |||||||||||||||||||||    
T  40383201 actctctccgtctaacattagggtgtcctattttagttttacatgattgaaatgcaataaataagg 40383266  T

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Target: chr4; HSP #4
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 493 - 598
Target Start/End: Complemental strand, 52412202 - 52412097
Alignment:
Q  493 tattatcatcaaatcaattgtactatccagtattacattcaatcggaataacaaagttattttgatatacaatgcattcttatccttgactgcaaatttt 592  Q
    ||||| |||||||||||||||| | |||| ||||| ||  |||  |||||| ||||||||| || |||||||| ||||||||| ||||||||||||||||    
T  52412202 tattagcatcaaatcaattgtattgtccaatattatatgaaatgagaataaaaaagttattctgctatacaattcattcttattcttgactgcaaatttt 52412103  T
Q  593 actgct 598  Q
     |||||    
T  52412102 tctgct 52412097  T

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Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 12 - 193
Target Start/End: Original strand, 33131524 - 33131705
Alignment:
Q  12 tgccagattatccgataccccttctgaatcttcttattcctagacaactcatcccaccacttccaaagatgaaacaggtccggtggtggataataattga 111  Q
    ||||| || |||||||| ||||||  || |||||||||||||| | | |||| |||||||| |||| |||  || || ||||||||||||| ||| |  |    
T  33131524 tgccaaataatccgataacccttcctaaccttcttattcctagccgagtcattccaccactgccaatgatagaaaagatccggtggtggatgatagtcaa 33131623  T
Q  112 aaccgagccatgacggaagcttggtccaaactgctgttgccgtaacacaattgagaaaaagatgatccgacacctccgggac 193  Q
    |||| ||||||  | |||| || ||||||| |||||||||||| ||||||| ||| || | |||||| ||| | ||||||||    
T  33131624 aaccaagccatctcagaagattagtccaaattgctgttgccgtcacacaatggaggaataaatgatcggactcttccgggac 33131705  T

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Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 77
Target Start/End: Original strand, 21867478 - 21867543
Alignment:
Q  12 tgccagattatccgataccccttctgaatcttcttattcctagacaactcatcccaccacttccaa 77  Q
    |||||||| ||||  ||||||||  |||||||||||||||  |||||||||| |||||||||||||    
T  21867478 tgccagataatccagtaccccttacgaatcttcttattccccgacaactcattccaccacttccaa 21867543  T

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Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 77
Target Start/End: Original strand, 21923339 - 21923404
Alignment:
Q  12 tgccagattatccgataccccttctgaatcttcttattcctagacaactcatcccaccacttccaa 77  Q
    |||||||| ||||  ||||||||  |||||||||||||||  |||||||||| |||||||||||||    
T  21923339 tgccagataatccagtaccccttacgaatcttcttattccccgacaactcattccaccacttccaa 21923404  T

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Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 264 - 335
Target Start/End: Original strand, 33131776 - 33131847
Alignment:
Q  264 gtcgggatccttccacgtaaaagcttccaagaaaaggcaatcaccttggccggtgccgggcttttccaaata 335  Q
    |||||||||||  | || || ||||||||||| |||||||||||||| | ||||||||| || |||||||||    
T  33131776 gtcgggatcctatcgcgaaagagcttccaagagaaggcaatcacctttgtcggtgccggactcttccaaata 33131847  T

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Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 282 - 336
Target Start/End: Complemental strand, 1611290 - 1611236
Alignment:
Q  282 aaaagcttccaagaaaaggcaatcaccttggccggtgccgggcttttccaaatat 336  Q
    |||||||||||||| ||||| | ||| |||| ||||||||| |||||||||||||    
T  1611290 aaaagcttccaagagaaggccaccactttggacggtgccggacttttccaaatat 1611236  T

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Target: chr3 (Bit Score: 282; Significance: 1e-157; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 282; E-Value: 1e-157
Query Start/End: Original strand, 1 - 310
Target Start/End: Complemental strand, 24837047 - 24836738
Alignment:
Q  1 aaatcgctgtgtgccagattatccgataccccttctgaatcttcttattcctagacaactcatcccaccacttccaaagatgaaacaggtccggtggtgg 100  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  24837047 aaatcgctgcgtgccagattatccgataccccttctgaatcttcttattcctagacaactcatcccaccacttccaaagatgaaacaggtccggtggtcg 24836948  T
Q  101 ataataattgaaaccgagccatgacggaagcttggtccaaactgctgttgccgtaacacaattgagaaaaagatgatccgacacctccgggaccccatga 200  Q
    ||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24836947 ataataattgaaaccgatccatgacagaagcttggtccaaactgctgttgccgtaacacaattgagaaaaagatgatccgacacctccgggaccccatga 24836848  T
Q  201 cacaacacacaggaaagagcagaatctggtggtaagacatgcctcctggaaagattgactctggtcgggatccttccacgtaaaagcttccaagaaaagg 300  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  24836847 cacaacgcacaggaaagagcagaatctggtggtaagacatgcctcctgaaaagattgactctggtcgggatccttccacgtaaaagcttcccagaaaagg 24836748  T
Q  301 caatcacctt 310  Q
    ||||||||||    
T  24836747 caatcacctt 24836738  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 558 - 598
Target Start/End: Original strand, 7773693 - 7773733
Alignment:
Q  558 tatacaatgcattcttatccttgactgcaaattttactgct 598  Q
    |||||||| ||||||||| |||||||||||||||| |||||    
T  7773693 tatacaattcattcttattcttgactgcaaatttttctgct 7773733  T

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Target: chr2 (Bit Score: 176; Significance: 2e-94; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 11 - 426
Target Start/End: Complemental strand, 34326262 - 34325847
Alignment:
Q  11 gtgccagattatccgataccccttctgaatcttcttattcctagacaactcatcccaccacttccaaagatgaaacaggtccggtggtggataataattg 110  Q
    |||||| || |||||||| ||||||  ||||||||||||||| |||||||||||| |||||||||||||||||||||  |||||||| |||| | |||||    
T  34326262 gtgccaaataatccgataacccttccaaatcttcttattccttgacaactcatccaaccacttccaaagatgaaacaaatccggtggcggatgaaaattg 34326163  T
Q  111 aaaccgagccatgacggaagcttggtccaaactgctgttgccgtaacacaattgagaaaaagatgatccgacacctccgggaccccatgacacaacacac 210  Q
    ||||||||||| ||| |||||||||| ||||||||||||||| ||| ||| ||||| ||||||||||||| ||| | ||| ||||||| |||||||||||    
T  34326162 aaaccgagccacgacagaagcttggttcaaactgctgttgccataatacagttgaggaaaagatgatccgtcactttcggaaccccatcacacaacacac 34326063  T
Q  211 aggaaagagcagaatctggtggtaagacatgcctcctggaaagattgactctggtcgggatccttccacgtaaaagcttccaagaaaaggcaatcacctt 310  Q
    |||||||||  || || ||||| | |||||||||||| || || ||| |||| ||||| |||||| | || | || ||||||||||||||||||||||||    
T  34326062 aggaaagagtggagtccggtggaaggacatgcctcctcgataggttggctctagtcggtatcctttcgcgaagaaacttccaagaaaaggcaatcacctt 34325963  T
Q  311 ggccggtgccgggcttttccaaatatgtgtgaacgccaacagctgcacctctgacagtgggtcagacaccaccatgtcatccaatttcctatacatggaa 410  Q
     | ||||||||| || |||||||||||||  |||||  ||||||||||||| |   | ||| |   ||||||||  ||||||||||||||||||||||||    
T  34325962 tggcggtgccggactcttccaaatatgtgaaaacgctgacagctgcacctccgttcgcgggacgatcaccaccaattcatccaatttcctatacatggaa 34325863  T
Q  411 ctcaccgaaaaggaac 426  Q
    ||||||||||||||||    
T  34325862 ctcaccgaaaaggaac 34325847  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 493 - 627
Target Start/End: Complemental strand, 14677025 - 14676891
Alignment:
Q  493 tattatcatcaaatcaattgtactatccagtattacattcaatcggaataacaaagttattttgatatacaatgcattcttatccttgactgcaaatttt 592  Q
    |||||||| |||||||||||||||||||| ||||| || |||| ||||||| |||||| | |||||||||| | ||  ||||| ||||  || |||||||    
T  14677025 tattatcaacaaatcaattgtactatccaatattatatgcaatgggaataataaagttctcttgatatacagtccacacttattcttggttgaaaatttt 14676926  T
Q  593 actgctttaattttatcaatagttatgagaaaatg 627  Q
    || | |||| | || | ||||||||||| ||||||    
T  14676925 acggttttactattgttaatagttatgaaaaaatg 14676891  T

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