View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9937_low_10 (Length: 442)
Name: NF9937_low_10
Description: NF9937
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9937_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 360; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 16 - 437
Target Start/End: Complemental strand, 37240335 - 37239913
Alignment:
| Q |
16 |
catgaactttgcttatgtactacattgatttgaaaggctataccacataaatctgcannnnnnnnn-gttggtatataatgcaaattgagaagaaaaaga |
114 |
Q |
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| T |
37240335 |
catgaactttgcttatgtactacaatgatttgaaaggctataccacataaatatgcattttttttttgttggtatataatgcaaattgagaagaaaaaga |
37240236 |
T |
|
| Q |
115 |
aataacattcaattttttgctaagaaaaaatgcttcctaccttgagaacagaatcaatgggatagttttctttaagcctaggatccaccaattttcgaag |
214 |
Q |
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| T |
37240235 |
aataacattcaattttttgctaagaaaaaatgcttcccaccttgagaacagaatcaatgggatagttttctttaagcctaggatccaccaattttcgaag |
37240136 |
T |
|
| Q |
215 |
accttctaaaggatccatttgatgaagtgcttcttcaaactgcaatacaaaataatcaaggataacttttgttctggtttaagtgaatgcattcagttta |
314 |
Q |
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| T |
37240135 |
accttctaaaggatccattcgatgaagtgcttcttcaaactgcaatacaaaataatcaaggataacttttgttctggtttaagtgaatgcattcagttta |
37240036 |
T |
|
| Q |
315 |
ctgaatttaaaatgtacataattactaacttaaaaatattttactataaatatacatgaaatgagtgttttcttcataaatatggtatctagacctacca |
414 |
Q |
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| T |
37240035 |
ctgaatttaaaatgtacataattactaacttaaaaatattttactaaaaatatacatgaaatgagtgttttcttaataaatatggtatctagacctacca |
37239936 |
T |
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| Q |
415 |
attgtacaagaccctttgcttct |
437 |
Q |
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| T |
37239935 |
attgtacaagaccctttgattct |
37239913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 142 - 266
Target Start/End: Complemental strand, 37316428 - 37316304
Alignment:
| Q |
142 |
aaatgcttcctaccttgagaacagaatcaatgggatagttttctttaagcctaggatccaccaattttcgaagaccttctaaaggatccatttgatgaag |
241 |
Q |
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|||||||||| ||||| |||||||||||||| ||||||| |||| |||| ||||||||||||| ||| ||||||| |||||||||||| | |||| ||| |
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| T |
37316428 |
aaatgcttcccacctttagaacagaatcaattggatagtcttctctaagtctaggatccaccagtttgcgaagactttctaaaggatcagtctgattaag |
37316329 |
T |
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| Q |
242 |
tgcttcttcaaactgcaatacaaaa |
266 |
Q |
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| T |
37316328 |
tgcttcttcaaactgcaatacaaaa |
37316304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 167 - 228
Target Start/End: Complemental strand, 37199230 - 37199169
Alignment:
| Q |
167 |
atcaatgggatagttttctttaagcctaggatccaccaattttcgaagaccttctaaaggat |
228 |
Q |
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| T |
37199230 |
atcaattggatagttatctccaagcctaggatccaccagttttttaagaccttctataggat |
37199169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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