View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9937_low_11 (Length: 426)

Name: NF9937_low_11
Description: NF9937
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9937_low_11
NF9937_low_11
[»] chr3 (1 HSPs)
chr3 (5-420)||(12136996-12137410)
[»] chr7 (1 HSPs)
chr7 (139-248)||(13052919-13053028)
[»] chr4 (3 HSPs)
chr4 (130-248)||(104029-104147)
chr4 (139-248)||(165006-165115)
chr4 (5-51)||(104572-104618)
[»] scaffold0013 (1 HSPs)
scaffold0013 (135-248)||(92125-92238)
[»] chr8 (6 HSPs)
chr8 (136-261)||(5691615-5691740)
chr8 (132-261)||(5669735-5669864)
chr8 (136-261)||(5722003-5722128)
chr8 (14-48)||(5669635-5669669)
chr8 (14-48)||(5690292-5690326)
chr8 (14-48)||(5721889-5721923)


Alignment Details
Target: chr3 (Bit Score: 404; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 5 - 420
Target Start/End: Original strand, 12136996 - 12137410
Alignment:
Q  5 caaaaccaacatcccatttttggctaccaaaactctgcattatattggcaaacaaattatgataagttaatactaaaacatgaatgattatattgttaat 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  12136996 caaaaccaacatcccatttttggctaccaaaactctgcattatattggcaaacaaattatgataagt-aatactaaaacatgaatgattatattgttaat 12137094  T
Q  105 taagttgtattgaaatatggagtcatatatatatacctgcatggtcattccgtcttctgaaacccataagtaatcgggcacccttgcgagatgcttcttg 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12137095 taagttgtattgaaatatggagtcatatatatatacctgcatggtcattccgtcttctgaaacccataagtaatcgggcacccttgcgagatgcttcttg 12137194  T
Q  205 aaagcatctccatttggatcttccacccatcaagaaagcatacacaacacctaaaaattacatacatcttaggagaatattcaaatgaatttccttttaa 304  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12137195 aaagcatctccatttggatcttccacccaacaagaaagcatacacaacacctaaaaattacatacatcttaggagaatattcaaatgaatttccttttaa 12137294  T
Q  305 aatgaaaaatttagaagttacttctgcgtcaggtaacgctcatatatagaaggcataagtaaataatccatatgttttattgctaatgctaggtcactta 404  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12137295 aatgaaaaatttagaagttacttctgcgtcaggtaacgctcatatatagaaggcataagtaaataatccatatgttttattgctaatgctaggtcactta 12137394  T
Q  405 ccttttccacgcatcc 420  Q
    ||||||||||||||||    
T  12137395 ccttttccacgcatcc 12137410  T

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Target: chr7 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 139 - 248
Target Start/End: Complemental strand, 13053028 - 13052919
Alignment:
Q  139 acctgcatggtcattccgtcttctgaaacccataagtaatcgggcacccttgcgagatgcttcttgaaagcatctccatttggatcttccacccatcaag 238  Q
    ||||||||||||||||| |||||||||||||| |||||||| || |||||||| ||||||||||||||||||||||||||||||||||||||||| ||||    
T  13053028 acctgcatggtcattccatcttctgaaacccacaagtaatctgggacccttgcaagatgcttcttgaaagcatctccatttggatcttccacccaacaag 13052929  T
Q  239 aaagcataca 248  Q
     |||||||||    
T  13052928 caagcataca 13052919  T

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Target: chr4 (Bit Score: 75; Significance: 2e-34; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 130 - 248
Target Start/End: Complemental strand, 104147 - 104029
Alignment:
Q  130 tatatatatacctgcatggtcattccgtcttctgaaacccataagtaatcgggcacccttgcgagatgcttcttgaaagcatctccatttggatcttcca 229  Q
    |||||||||||||||||||||||||| |||||||| | ||| ||||||||  | |||||||| |||||||||||| ||||||||||||||||||||||||    
T  104147 tatatatatacctgcatggtcattccatcttctgacatccacaagtaatcttggacccttgcaagatgcttcttgtaagcatctccatttggatcttcca 104048  T
Q  230 cccatcaagaaagcataca 248  Q
    |||| |||| |||||||||    
T  104047 cccaacaagcaagcataca 104029  T

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Target: chr4; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 139 - 248
Target Start/End: Complemental strand, 165115 - 165006
Alignment:
Q  139 acctgcatggtcattccgtcttctgaaacccataagtaatcgggcacccttgcgagatgcttcttgaaagcatctccatttggatcttccacccatcaag 238  Q
    ||||||||||||||||| |||||||| | ||| |||||||| || |||||||| |||||||||||| |||||||||||||||||||||||||||| ||||    
T  165115 acctgcatggtcattccatcttctgacatccacaagtaatctgggacccttgcaagatgcttcttgtaagcatctccatttggatcttccacccaacaag 165016  T
Q  239 aaagcataca 248  Q
     |||||||||    
T  165015 caagcataca 165006  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 5 - 51
Target Start/End: Complemental strand, 104618 - 104572
Alignment:
Q  5 caaaaccaacatcccatttttggctaccaaaactctgcattatattg 51  Q
    |||||||| ||||||||| |||||||||||||||||||||| |||||    
T  104618 caaaaccagcatcccattcttggctaccaaaactctgcattgtattg 104572  T

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Target: scaffold0013 (Bit Score: 66; Significance: 5e-29; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 135 - 248
Target Start/End: Original strand, 92125 - 92238
Alignment:
Q  135 atatacctgcatggtcattccgtcttctgaaacccataagtaatcgggcacccttgcgagatgcttcttgaaagcatctccatttggatcttccacccat 234  Q
    ||||||||||||||||||||| ||||| |||| |||||| |||||||| |||||||| ||||| || |||||||||||||||||||||||||| |||||     
T  92125 atatacctgcatggtcattccatcttcggaaatccataaataatcggggacccttgcaagatgttttttgaaagcatctccatttggatcttcaacccaa 92224  T
Q  235 caagaaagcataca 248  Q
    || | |||||||||    
T  92225 caggcaagcataca 92238  T

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Target: chr8 (Bit Score: 66; Significance: 5e-29; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 136 - 261
Target Start/End: Original strand, 5691615 - 5691740
Alignment:
Q  136 tatacctgcatggtcattccgtcttctgaaacccataagtaatcgggcacccttgcgagatgcttcttgaaagcatctccatttggatcttccacccatc 235  Q
    ||||| |||| ||||||||| ||||| | ||||||||| || || || | |||||| |||||||||||||| |||||||||||||||||||||||||| |    
T  5691615 tatacatgcagggtcattccatcttcagcaacccataaatagtctgggagccttgcaagatgcttcttgaatgcatctccatttggatcttccacccaac 5691714  T
Q  236 aagaaagcatacacaacacctaaaaa 261  Q
    |||||||||| ||||| |||||||||    
T  5691715 aagaaagcatgcacaaaacctaaaaa 5691740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 132 - 261
Target Start/End: Original strand, 5669735 - 5669864
Alignment:
Q  132 tatatatacctgcatggtcattccgtcttctgaaacccataagtaatcgggcacccttgcgagatgcttcttgaaagcatctccatttggatcttccacc 231  Q
    ||||| ||| |||| ||||||||| ||||| ||||||||||| || |  || | |||||| |||||||||||||| ||||||||||||||||||||||||    
T  5669735 tatatttacatgcagggtcattccatcttcagaaacccataaatagtttgggagccttgcaagatgcttcttgaatgcatctccatttggatcttccacc 5669834  T
Q  232 catcaagaaagcatacacaacacctaaaaa 261  Q
    || |||| |||||| ||||| |||||||||    
T  5669835 caacaagcaagcatgcacaaaacctaaaaa 5669864  T

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Target: chr8; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 136 - 261
Target Start/End: Original strand, 5722003 - 5722128
Alignment:
Q  136 tatacctgcatggtcattccgtcttctgaaacccataagtaatcgggcacccttgcgagatgcttcttgaaagcatctccatttggatcttccacccatc 235  Q
    ||||| |||| ||||||||| ||||| |||| |||||| || || || | |||||| |||||||||||||| |||||||||||||||||||||||||| |    
T  5722003 tatacatgcagggtcattccatcttcagaaatccataaatagtctgggagccttgcaagatgcttcttgaatgcatctccatttggatcttccacccaac 5722102  T
Q  236 aagaaagcatacacaacacctaaaaa 261  Q
    ||| |||||| ||||| |||||||||    
T  5722103 aagcaagcatgcacaaaacctaaaaa 5722128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 14 - 48
Target Start/End: Original strand, 5669635 - 5669669
Alignment:
Q  14 catcccatttttggctaccaaaactctgcattata 48  Q
    |||||||| ||||||||||||||||||||||||||    
T  5669635 catcccatgtttggctaccaaaactctgcattata 5669669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 14 - 48
Target Start/End: Original strand, 5690292 - 5690326
Alignment:
Q  14 catcccatttttggctaccaaaactctgcattata 48  Q
    |||||||| ||||||||||||||||||||||||||    
T  5690292 catcccatgtttggctaccaaaactctgcattata 5690326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 14 - 48
Target Start/End: Original strand, 5721889 - 5721923
Alignment:
Q  14 catcccatttttggctaccaaaactctgcattata 48  Q
    |||||||| ||||||||||||||||||||||||||    
T  5721889 catcccatgtttggctaccaaaactctgcattata 5721923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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