View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9937_low_12 (Length: 421)
Name: NF9937_low_12
Description: NF9937
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9937_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 381; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 19 - 411
Target Start/End: Complemental strand, 182673 - 182281
Alignment:
| Q |
19 |
caagaaccatgtgacaaaactgagtaacctgaaagaacaaatataggaatttgaaagcagcgggtcataaaagtggaatagtgactcaccttattcaatg |
118 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
182673 |
caagaaccatgtgacaaaactgaataacctgaaagaacaaatattggaatttgaaagcagcgggtcataaaagtggaatagtgactcaccttattcaatg |
182574 |
T |
|
| Q |
119 |
caacaatgaattgtgtgttcctcgtttttagtagacggaatgactctacagtttctgggtctaagccatgcataatatctacaaccaaaattgcaatatc |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
182573 |
caacaatgaattgtgtgttcctcgtttttagtagacggaatgactctacagtttctgggtctaagccatgcataatatctacaaccaaaattgcaatatc |
182474 |
T |
|
| Q |
219 |
acatagacttgaaccccaagaaattgagttattgaatgattggtggcctggggtatcaataaccagtagacgcctacttccatggacaggaaagtatgtt |
318 |
Q |
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| T |
182473 |
acatagacttgaaccccaagaaattgagttattgaatgattggtggcctggggtatcaataaccagtagacgcctacttccatggacaggaaagtatgtt |
182374 |
T |
|
| Q |
319 |
gtgccactctgttggttgataccgccttcttgaaaattgttacctcgaataccacccagaagcttggtttttccagtgttgacatcacctatg |
411 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
182373 |
gtgccactctgttggtcgataccgccttcttgaaaattgttacctcgaataccacccagaagcttggtttttccagtgttgacatcacctatg |
182281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 182 - 264
Target Start/End: Original strand, 29220230 - 29220313
Alignment:
| Q |
182 |
agccatgcataatatctacaaccaaaattgcaatatca-catagacttgaaccccaagaaattgagttattgaatgattggtgg |
264 |
Q |
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| T |
29220230 |
agccacgcataatgttaacaaccaaaattgcaatatcaacatagacttgaaccccaaaaatgggagttattgaatgattggtgg |
29220313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 183 - 232
Target Start/End: Original strand, 593608 - 593657
Alignment:
| Q |
183 |
gccatgcataatatctacaaccaaaattgcaatatcacatagacttgaac |
232 |
Q |
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|||||||||||| ||||||||||||||||| ||||||||||||| ||||| |
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| T |
593608 |
gccatgcataatgtctacaaccaaaattgcgatatcacatagacctgaac |
593657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 355 - 411
Target Start/End: Complemental strand, 3014042 - 3013986
Alignment:
| Q |
355 |
ttgttacctcgaataccacccagaagcttggtttttccagtgttgacatcacctatg |
411 |
Q |
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|||||||||||||||| ||| |||||| ||||||| ||||||| ||||||||||| |
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|
| T |
3014042 |
ttgttacctcgaatacaaccgagaagcgtggttttgccagtgtacgcatcacctatg |
3013986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 185 - 225
Target Start/End: Complemental strand, 3014173 - 3014133
Alignment:
| Q |
185 |
catgcataatatctacaaccaaaattgcaatatcacataga |
225 |
Q |
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|
| T |
3014173 |
catgcataatgtcaacaaccaaaatagcaatatcacataga |
3014133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 112; Significance: 2e-56; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 102 - 289
Target Start/End: Complemental strand, 44605138 - 44604951
Alignment:
| Q |
102 |
actcaccttattcaatgcaacaatgaattgtgtgttcctcgtttttagtagacggaatgactctacagtttctgggtctaagccatgcataatatctaca |
201 |
Q |
| |
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|||||||||||| |||||||||||||| | |||||||||| |||||| |||| || |||||||| ||||| ||| ||||||||||||||||| || ||| |
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| T |
44605138 |
actcaccttatttaatgcaacaatgaactctgtgttcctcatttttaatagattgagtgactctatagtttgtggctctaagccatgcataatgtcaaca |
44605039 |
T |
|
| Q |
202 |
accaaaattgcaatatcacatagacttgaaccccaagaaattgagttattgaatgattggtggcctggggtatcaataaccagtagac |
289 |
Q |
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||||||||||||||||||||||||| |||||||| ||| || ||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
44605038 |
accaaaattgcaatatcacatagacctgaaccccgagaccttaagttattgaatgattcgtggcctggggtatcaataaccagtagac |
44604951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 103 - 289
Target Start/End: Complemental strand, 44626902 - 44626716
Alignment:
| Q |
103 |
ctcaccttattcaatgcaacaatgaattgtgtgttcctcgtttttagtagacggaatgactctacagtttctgggtctaagccatgcataatatctacaa |
202 |
Q |
| |
|
|||||||||||||||||||| ||||||| ||||||||| |||||| |||| || |||||||| ||||| ||| ||||||||||||||||| || |||| |
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| T |
44626902 |
ctcaccttattcaatgcaacgatgaattcagtgttcctcatttttaatagattgagtgactctatagtttgtggctctaagccatgcataatgtccacaa |
44626803 |
T |
|
| Q |
203 |
ccaaaattgcaatatcacatagacttgaaccccaagaaattgagttattgaatgattggtggcctggggtatcaataaccagtagac |
289 |
Q |
| |
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|||||||||||||||||||||||| |||||||| ||| | ||||||||||||| | ||| ||||||||||||||||||||||||| |
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| T |
44626802 |
ccaaaattgcaatatcacatagacctgaaccccgagacctcaagttattgaatgactcgtgtcctggggtatcaataaccagtagac |
44626716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 343 - 397
Target Start/End: Complemental strand, 44626608 - 44626554
Alignment:
| Q |
343 |
ccttcttgaaaattgttacctcgaataccacccagaagcttggtttttccagtgt |
397 |
Q |
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|||||||||| |||| |||||||||| | | |||||||||||||||| ||||||| |
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| T |
44626608 |
ccttcttgaacattggtacctcgaatgcaatccagaagcttggttttgccagtgt |
44626554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 185 - 235
Target Start/End: Original strand, 40672520 - 40672570
Alignment:
| Q |
185 |
catgcataatatctacaaccaaaattgcaatatcacatagacttgaacccc |
235 |
Q |
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|||||||||| || ||||||||||| ||||||||||||||| |||||||| |
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| T |
40672520 |
catgcataatgtcaacaaccaaaatagcaatatcacatagatatgaacccc |
40672570 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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