View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9937_low_13 (Length: 403)
Name: NF9937_low_13
Description: NF9937
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9937_low_13 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 286; Significance: 1e-160; HSPs: 11)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 1 - 388
Target Start/End: Original strand, 35341151 - 35341539
Alignment:
| Q |
1 |
gaattaatattgacaaaatagaatgtttgagtggatgcttaatggttgtagaacatataaagtgttgaatgtagaaagtggaacgacatgttgtcatttg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35341151 |
gaattaatattgacaaaatagaatgtttgagtggatgcttaatggttgtagaacatataaagtgttgaatgtagaaagtggaacgacatgttgtcatttg |
35341250 |
T |
|
| Q |
101 |
atgatattctttggaagccataatgacgcggctacgagagtaataattttgcttggatcatattcaattttggggatattataaattcttataacactat |
200 |
Q |
| |
|
||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
35341251 |
atgatattctttgcaagcc--aatgacgcggctacgagagtaataattttgcttggatcatattgaattttggggatattataaattcttataacactat |
35341348 |
T |
|
| Q |
201 |
acttt---tgggttaagggcgaaaaactctcaaacttttggttcaagagtgaaattcgaaggattatccacatttgaaccaaaatattacatacatttgg |
297 |
Q |
| |
|
|| | || ||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
35341349 |
acactcaagaagtcaagggcgaaaaactctcaaacttttgggtcaagagtgaaattcaaaggattatccacatttgaaccaaaatatttcatacatttgg |
35341448 |
T |
|
| Q |
298 |
attatttgttggacactacaacttaactcaaaatctttagacattcaatttatgaattcccttgattcagaggattatccacaacaataat |
388 |
Q |
| |
|
||| |||||| |||||||||||||||||||||| ||||||||||||||||||||||||| | ||||||||||||||||| |||||||| |
|
|
| T |
35341449 |
attctttgttagacactacaacttaactcaaaacctttagacattcaatttatgaattctttcaattcagaggattatccaacacaataat |
35341539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 6 - 82
Target Start/End: Original strand, 35356125 - 35356201
Alignment:
| Q |
6 |
aatattgacaaaatagaatgtttgagtggatgcttaatggttgtagaacatataaagtgttgaatgtagaaagtgga |
82 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| |
|
|
| T |
35356125 |
aatattgacaaaatagaatgtttgagtggatgcttaatggatgtagaacatataaagtgttggatgtagaaagtgga |
35356201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 6 - 84
Target Start/End: Original strand, 35374751 - 35374827
Alignment:
| Q |
6 |
aatattgacaaaatagaatgtttgagtggatgcttaatggttgtagaacatataaagtgttgaatgtagaaagtggaac |
84 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||| | ||||||||||||||| ||||||| |||||||| |
|
|
| T |
35374751 |
aatattgacaaaatagaatgtttgagtggatgcacaatggttg--ggacatataaagtgttggatgtagatagtggaac |
35374827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 6 - 93
Target Start/End: Original strand, 35335980 - 35336068
Alignment:
| Q |
6 |
aatattgacaaaatagaatgtttgagtggatgctta--atggttgtagaacatataaagtgttgaatgtagaaagtggaacgacatgttg |
93 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| || ||||||| |||||||||||||||| |||||||||||||||||||| |||| |
|
|
| T |
35335980 |
aatattgacaaaataaaatgtttgagtggatgcatataatggttgg-gaacatataaagtgtttgatgtagaaagtggaacgacaagttg |
35336068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 88 - 181
Target Start/End: Original strand, 35372076 - 35372167
Alignment:
| Q |
88 |
atgttgtcatttgatgatattctttggaagccataatgacgcggctacgagagtaataattttgcttggatcatattcaa-ttttggggatatta |
181 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| || ||||||| ||||||||||||||||||||||||||| || || |||| ||||||||| |
|
|
| T |
35372076 |
atgttgtcatttgatga-attctttggaagcca--atcacgcggcggcgagagtaataattttgcttggatcatgttgaactttttgggatatta |
35372167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 309 - 388
Target Start/End: Original strand, 35346778 - 35346855
Alignment:
| Q |
309 |
gacactacaacttaactcaaaatctttagacattcaatttatgaattcccttgattcagaggattatccacaacaataat |
388 |
Q |
| |
|
|||| |||||||||||| || ||||||||||||| | ||||||||||||| |||||||||||||||| |||||||||| |
|
|
| T |
35346778 |
gacaatacaacttaacttaa--tctttagacattcgacttatgaattccctcaattcagaggattatccgcaacaataat |
35346855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 134 - 181
Target Start/End: Original strand, 35346594 - 35346641
Alignment:
| Q |
134 |
acgagagtaataattttgcttggatcatattcaattttggggatatta |
181 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||| ||||||| |
|
|
| T |
35346594 |
acgagagtaataattttgcttggatcatatttaattttggtgatatta |
35346641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 88 - 264
Target Start/End: Original strand, 35351719 - 35351887
Alignment:
| Q |
88 |
atgttgtcatttgatgatattctttggaagccataatgacgcggctacgagagtaataattttgcttggatcata-ttcaattttggggatattataaat |
186 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| || || ||||||||||||||||||||||||||||| || | ||||| ||||||||| | |
|
|
| T |
35351719 |
atgttgtcatttcatgatattctttggaagcca-----accatgc-acgagagtaataattttgcttggatcatattttatttttgtagatattatatct |
35351812 |
T |
|
| Q |
187 |
tcttataacactatacttttgggttaagggcgaaaaactctcaaacttttggttcaagagtgaaattcgaaggattat |
264 |
Q |
| |
|
| ||| |||||||||| | | | ||||| |||||||||||||||| ||| ||||||||| | |||| |||||||| |
|
|
| T |
35351813 |
ttttaaaacactatacatat---tcaagggacaaaaactctcaaacttctgggtcaagagtggagttcggaggattat |
35351887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 38
Target Start/End: Complemental strand, 35343174 - 35343142
Alignment:
| Q |
6 |
aatattgacaaaatagaatgtttgagtggatgc |
38 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
35343174 |
aatattgacaaaatagaatgtttgagtggatgc |
35343142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 38
Target Start/End: Complemental strand, 35347846 - 35347814
Alignment:
| Q |
6 |
aatattgacaaaatagaatgtttgagtggatgc |
38 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
35347846 |
aatattgacaaaatagaatgtttgagtggatgc |
35347814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 38
Target Start/End: Original strand, 35368600 - 35368632
Alignment:
| Q |
6 |
aatattgacaaaatagaatgtttgagtggatgc |
38 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
35368600 |
aatattgacaaaatagaatgtttgagtggatgc |
35368632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University