View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9937_low_18 (Length: 315)
Name: NF9937_low_18
Description: NF9937
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9937_low_18 |
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Alignment Details
Target: chr8 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 1 - 297
Target Start/End: Complemental strand, 26795774 - 26795478
Alignment:
| Q |
1 |
attatcagtgtagatgtgtgcgtgttatgaccaattttcgtactaatgatggtttcaaactttgcagaggctttatactggccaatgtttgttgttgctg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| |
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| T |
26795774 |
attatcagtgtagatgtgtgcgtgttatgaccaattttcgtagtaatgatggtttcaaactttgcagatgctttatattggccaatgtttgttgttgctg |
26795675 |
T |
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| Q |
101 |
ttatggcagcaatcatagcttctcaatccttgatctctggggctttttctataatccaacaatccctctcacttggatgttttcctcgtgtgaaaatcgt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26795674 |
ttatggcagcaatcatagcttctcaatccttgatctctggggctttttctataatccaacaatccctctcacttggatgttttcctcgtgtgaaaatcgt |
26795575 |
T |
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| Q |
201 |
acacacatcaatcaagtatccaggacaagtctacatccctgaaattaatttccttctcatgatttcttgtatcgcagtcactgctgtatttaaaact |
297 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26795574 |
acacacatcaatcaagtatccaggacaagtctacatccctgaaattaatttccttctcatgatttcttgtatcgcagtcactgctgtatttaaaact |
26795478 |
T |
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Back To:
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Target: chr7 (Bit Score: 71; Significance: 4e-32; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 74 - 272
Target Start/End: Complemental strand, 44179426 - 44179228
Alignment:
| Q |
74 |
tatactggccaatgtttgttgttgctgttatggcagcaatcatagcttctcaatccttgatctctggggctttttctataatccaacaatccctctcact |
173 |
Q |
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|||| |||||||||||||| |||||||| |||||||||| || ||||||||| || |||| || ||| |||| |||||||||||||||||| | ||| | |
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| T |
44179426 |
tatattggccaatgtttgtgattgctgttctggcagcaattattgcttctcaagccatgatatcagggactttctctataatccaacaatccttatcatt |
44179327 |
T |
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| Q |
174 |
tggatgttttcctcgtgtgaaaatcgtacacacatcaatcaagtatccaggacaagtctacatccctgaaattaatttccttctcatgatttcttgtat |
272 |
Q |
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|||||||||||||||||| |||| ||||| |||||| ||||||| |||||| || || ||||| ||| |||||| | | ||||||||| ||||||| |
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| T |
44179326 |
gggatgttttcctcgtgtgcaaattgtacatacatcagccaagtatgaaggacaggtttatatcccagaagttaattacatcctcatgattgcttgtat |
44179228 |
T |
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