View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9937_low_20 (Length: 302)
Name: NF9937_low_20
Description: NF9937
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9937_low_20 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 18 - 301
Target Start/End: Original strand, 35239324 - 35239607
Alignment:
| Q |
18 |
gttggccataatgattgattgattcttgttgttacaatgtcaccgatatttattctgttgtttgtgactgtgttctgagtcagcgatacgatgattaaat |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35239324 |
gttggccataatgattgattgattcttgttgttacaatgtcaccgatatttattctgttgtttgtgactgtgttctgagtcagcgatacgatgattaaat |
35239423 |
T |
|
| Q |
118 |
taataattaaagatggtagtgataatgataataatgtaaaccttcattaaattaactaatgttgaaaattgtgatgttgagtgaaatcatccagcacatg |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35239424 |
taataattaaagatggtagtgataatgataataatgtaaaccttcattaaattaactaatgttgaaaattgtgatgttgagtgaaatcatccagcacatg |
35239523 |
T |
|
| Q |
218 |
tgatgaaatcatatcatatcactgaataacacctaagtttaaaaatatctctgaatacagacattgttttctgtgctcctcctc |
301 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| || ||||| |
|
|
| T |
35239524 |
tgatgaaatcatatcatatcactgaataacacctaagtttaaaaatatctctgaatagagacattgttttccgtggtcatcctc |
35239607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University