View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9937_low_25 (Length: 245)
Name: NF9937_low_25
Description: NF9937
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9937_low_25 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 204; Significance: 1e-111; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 23 - 230
Target Start/End: Complemental strand, 41605403 - 41605196
Alignment:
| Q |
23 |
gaatttgggtaccaaagaagtggaaagaaatgcaaagaaaagtttgagaatttgtacaagtattacaagaagaccaaggaaggtaaagctagtagacaag |
122 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41605403 |
gaatttgggtaccaaagaagtggaaagaaatgcaaagaaaagtttgagaatttgtacaagtattacaagaagaccaaggaaggtaaagctagtagacaag |
41605304 |
T |
|
| Q |
123 |
atggtaagcactatagatttttcagacagcttgaagcaatatgtggagaaccaaacacaaattctcatgcctcaactttagacaaaattacccctaatgc |
222 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
41605303 |
atggtaagcactatagatttttcagacagcttgaagcaatatgtggagaaccaaacacaaattctcacgcctcaactttagacaaaattacccctaatgc |
41605204 |
T |
|
| Q |
223 |
ttcctttg |
230 |
Q |
| |
|
|||||||| |
|
|
| T |
41605203 |
ttcctttg |
41605196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 35 - 132
Target Start/End: Original strand, 26599217 - 26599314
Alignment:
| Q |
35 |
caaagaagtggaaagaaatgcaaagaaaagtttgagaatttgtacaagtattacaagaagaccaaggaaggtaaagctagtagacaagatggtaagca |
132 |
Q |
| |
|
||||| |||||||| || |||| |||||| ||||||||| ||||||| |||||||||||||| || ||||||||||| | || || ||||||||||| |
|
|
| T |
26599217 |
caaaggagtggaaaaaagtgcagagaaaaatttgagaatctgtacaaatattacaagaagacaaaagaaggtaaagcaggaaggcatgatggtaagca |
26599314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 92
Target Start/End: Complemental strand, 44554631 - 44554560
Alignment:
| Q |
21 |
cagaatttgggtaccaaagaagtggaaagaaatgcaaagaaaagtttgagaatttgtacaagtattacaaga |
92 |
Q |
| |
|
||||| |||||||||| |||||| ||||||||||||||| |||||||||||| | || |||||| |||||| |
|
|
| T |
44554631 |
cagaacttgggtaccacagaagttcaaagaaatgcaaagagaagtttgagaatgtttataagtatcacaaga |
44554560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University