View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9937_low_26 (Length: 243)
Name: NF9937_low_26
Description: NF9937
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9937_low_26 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 20 - 243
Target Start/End: Original strand, 46097891 - 46098114
Alignment:
| Q |
20 |
ttaggctcataccaaaaccctcttaatcatctccatattttcccttattattcaaactacatcaaacttggtcaccttgagttttctatccttagccaac |
119 |
Q |
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| T |
46097891 |
ttaggctcataccaaaaccctcttaatcatctccatattttcccttattattcaaactacatcaaacttggtcaccttgagttttctatccttagccaac |
46097990 |
T |
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| Q |
120 |
actgcactcatgtccctaacaaaattgcttttattggttcgggaccccttccccttacttcaattgtcttggcatcgaaccacttaccttcaaccacttt |
219 |
Q |
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| T |
46097991 |
actgcactcatgtccctaacaaaattgcttttattggttcgggaccccttccccttacttcaattgtcttggcatggaaccacttaccttcaaccacttt |
46098090 |
T |
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| Q |
220 |
tcacaactacgacatcgacccttt |
243 |
Q |
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| T |
46098091 |
tcacaactacgacatcgacccttt |
46098114 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 56 - 186
Target Start/End: Original strand, 37484691 - 37484821
Alignment:
| Q |
56 |
attttcccttattattcaaactacatcaaacttggtcaccttgagttttctatccttagccaacactgcactcatgtccctaacaaaattgcttttattg |
155 |
Q |
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| T |
37484691 |
attttcccttattattcaaactacctcaaacttagtctccttgaattcaatatcttaaccaaacactccactaatgttcctaaaaaaattgcctttattg |
37484790 |
T |
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| Q |
156 |
gttcgggaccccttccccttacttcaattgt |
186 |
Q |
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| T |
37484791 |
gctcaggtccacttccacttacttcacttgt |
37484821 |
T |
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